| Clone Name | rbags39h04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB257219.1| Phragmites australis PhaHAK4 mRNA for potassium transporter, complete cds, strain: Enchi Length = 2786 Score = 301 bits (152), Expect = 2e-78 Identities = 302/352 (85%) Strand = Plus / Minus Query: 245 cgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttcaaggt 304 ||||||||||||||| ||||| || |||||||||||||| |||||||| | ||||| || Sbjct: 2588 cgatcagaccatgtatgtcataccgacacgcatgatgtttgagtgaggaaccttcagtgt 2529 Query: 305 tgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatgaactt 364 ||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 2528 tgcagtgccagccctgcaattcctcctgaggaatgcatagaagtagttgatgataaactt 2469 Query: 365 ctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatatgtgaa 424 ||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2468 cttcatgaagagcgattccttcctcgccctcacatcgccatgggccaagagatatgtgaa 2409 Query: 425 cccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtcttcttc 484 |||||||||||||||||| |||| || || |||||||||||||| | ||||||||||| Sbjct: 2408 cccagatgccatggcttctctcaaagctgccagctcgtactctaaaccagggtcttcttc 2349 Query: 485 tgcagacatggagctagagggtagcaaaggaacgctgccttccatgcccagcatttcatt 544 ||| ||||||||||| || || ||||| ||| | || |||||| || | |||| ||| Sbjct: 2348 tgcggacatggagctggatggaagcaatggagcactaccttccgtgttgaacattctatt 2289 Query: 545 gtcatcacccggtctctgatcagaaagcagtggagtgtgcagatcctcagca 596 ||||||| || |||||||||||||||||||||| |||||||||| ||||| Sbjct: 2288 gtcatcaaccaatctctgatcagaaagcagtggaacgtgcagatccccagca 2237 Score = 186 bits (94), Expect = 8e-44 Identities = 133/146 (91%) Strand = Plus / Minus Query: 642 tcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggcttccctcctcaga 701 ||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| | Sbjct: 2194 tcacgctctgcctccattgtgctcgcctcgagcgcgatttcctgggcttccctcctcata 2135 Query: 702 aatttctctaggctttcaaccaagagatgctcaaatgagccatggtcctctttcctgaca 761 |||||||| |||||||||||||| || |||||||| ||||||| ||||||||||| ||| Sbjct: 2134 aatttctcgaggctttcaaccaaaagttgctcaaagaagccatgatcctctttcctaaca 2075 Query: 762 tccttgtaaccataccgtgcaacaca 787 ||||| |||||||||||||||||||| Sbjct: 2074 tccttataaccataccgtgcaacaca 2049 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 151 gtacaatccctaaactacctgctggtgtagcattccatccaagatg 196 ||||||||||||||||||| ||||||| || || |||||||||||| Sbjct: 2664 gtacaatccctaaactaccagctggtgcagtatcccatccaagatg 2619
>dbj|AB257218.1| Phragmites australis PhaHAK4 mRNA for potassium transporter, complete cds, strain: Nanpi Length = 2794 Score = 301 bits (152), Expect = 2e-78 Identities = 302/352 (85%) Strand = Plus / Minus Query: 245 cgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttcaaggt 304 ||||||||||||||| ||||| || |||||||||||||| |||||||| | ||||| || Sbjct: 2588 cgatcagaccatgtatgtcataccgacacgcatgatgtttgagtgaggaaccttcagtgt 2529 Query: 305 tgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatgaactt 364 ||| |||||||||||||| |||||||| ||||| || ||||| ||||||||||| ||||| Sbjct: 2528 tgcagtgccagccctgcaattcctcctgaggaatgcatagaagtagttgatgataaactt 2469 Query: 365 ctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatatgtgaa 424 ||| |||||| |||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2468 cttcatgaagagcgattccttcctcgccctcacatcgccatgggccaagagatatgtgaa 2409 Query: 425 cccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtcttcttc 484 |||||||||||||||||| |||| || || |||||||||||||| | ||||||||||| Sbjct: 2408 cccagatgccatggcttctctcaaagctgccagctcgtactctaaaccagggtcttcttc 2349 Query: 485 tgcagacatggagctagagggtagcaaaggaacgctgccttccatgcccagcatttcatt 544 ||| ||||||||||| || || ||||| ||| | || |||||| || | |||| ||| Sbjct: 2348 tgcggacatggagctggatggaagcaatggagcactaccttccgtgttgaacattctatt 2289 Query: 545 gtcatcacccggtctctgatcagaaagcagtggagtgtgcagatcctcagca 596 ||||||| || |||||||||||||||||||||| |||||||||| ||||| Sbjct: 2288 gtcatcaaccaatctctgatcagaaagcagtggaacgtgcagatccccagca 2237 Score = 186 bits (94), Expect = 8e-44 Identities = 133/146 (91%) Strand = Plus / Minus Query: 642 tcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggcttccctcctcaga 701 ||||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||| | Sbjct: 2194 tcacgctctgcctccattgtgctcgcctcgagcgcgatttcctgggcttccctcctcata 2135 Query: 702 aatttctctaggctttcaaccaagagatgctcaaatgagccatggtcctctttcctgaca 761 |||||||| |||||||||||||| || |||||||| ||||||| ||||||||||| ||| Sbjct: 2134 aatttctcgaggctttcaaccaaaagttgctcaaagaagccatgatcctctttcctaaca 2075 Query: 762 tccttgtaaccataccgtgcaacaca 787 ||||| |||||||||||||||||||| Sbjct: 2074 tccttataaccataccgtgcaacaca 2049 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 151 gtacaatccctaaactacctgctggtgtagcattccatccaagatg 196 ||||||||||||||||||| ||||||| || || |||||||||||| Sbjct: 2664 gtacaatccctaaactaccagctggtgcagtatcccatccaagatg 2619
>ref|XM_450750.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3085 Score = 260 bits (131), Expect = 6e-66 Identities = 218/247 (88%) Strand = Plus / Minus Query: 240 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 299 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 2749 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 2690 Query: 300 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 359 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 2689 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 2630 Query: 360 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 419 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 2629 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 2570 Query: 420 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 479 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 2569 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 2510 Query: 480 tcttctg 486 ||||||| Sbjct: 2509 tcttctg 2503 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Minus Query: 631 cagacacatcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggctt 690 |||| ||||| ||||||||| | |||||||||| | ||||| || | |||||||| || Sbjct: 2364 cagaaacatcgtcacgctctactgccattgcgcttgcttcaagtgccatttcctgggatt 2305 Query: 691 ccctcctcagaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcct 750 || |||||| ||||||||| ||| |||||||||| || |||||||| ||||||| |||| Sbjct: 2304 ccttcctcaaaaatttctccagggtttcaaccaaaagctgctcaaagaagccatgttcct 2245 Query: 751 ctttcctgacatccttgtaaccataccgtgcaacacaa 788 |||||||||||||||||||||||||||||||||||||| Sbjct: 2244 ctttcctgacatccttgtaaccataccgtgcaacacaa 2207 Score = 48.1 bits (24), Expect = 0.044 Identities = 30/32 (93%) Strand = Plus / Minus Query: 547 catcacccggtctctgatcagaaagcagtgga 578 |||||||| | ||||||||||||||||||||| Sbjct: 2445 catcacccagcctctgatcagaaagcagtgga 2414
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 260 bits (131), Expect = 6e-66 Identities = 218/247 (88%) Strand = Plus / Plus Query: 240 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 299 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 12609409 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 12609468 Query: 300 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 359 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 12609469 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 12609528 Query: 360 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 419 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 12609529 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 12609588 Query: 420 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 479 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 12609589 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 12609648 Query: 480 tcttctg 486 ||||||| Sbjct: 12609649 tcttctg 12609655 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Plus Query: 631 cagacacatcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggctt 690 |||| ||||| ||||||||| | |||||||||| | ||||| || | |||||||| || Sbjct: 12609794 cagaaacatcgtcacgctctactgccattgcgcttgcttcaagtgccatttcctgggatt 12609853 Query: 691 ccctcctcagaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcct 750 || |||||| ||||||||| ||| |||||||||| || |||||||| ||||||| |||| Sbjct: 12609854 ccttcctcaaaaatttctccagggtttcaaccaaaagctgctcaaagaagccatgttcct 12609913 Query: 751 ctttcctgacatccttgtaaccataccgtgcaacacaa 788 |||||||||||||||||||||||||||||||||||||| Sbjct: 12609914 ctttcctgacatccttgtaaccataccgtgcaacacaa 12609951 Score = 48.1 bits (24), Expect = 0.044 Identities = 30/32 (93%) Strand = Plus / Plus Query: 547 catcacccggtctctgatcagaaagcagtgga 578 |||||||| | ||||||||||||||||||||| Sbjct: 12609713 catcacccagcctctgatcagaaagcagtgga 12609744
>dbj|AP005838.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0041C07 Length = 179047 Score = 260 bits (131), Expect = 6e-66 Identities = 218/247 (88%) Strand = Plus / Plus Query: 240 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 299 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 75347 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 75406 Query: 300 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 359 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 75407 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 75466 Query: 360 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 419 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 75467 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 75526 Query: 420 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 479 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 75527 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 75586 Query: 480 tcttctg 486 ||||||| Sbjct: 75587 tcttctg 75593 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Plus Query: 631 cagacacatcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggctt 690 |||| ||||| ||||||||| | |||||||||| | ||||| || | |||||||| || Sbjct: 75732 cagaaacatcgtcacgctctactgccattgcgcttgcttcaagtgccatttcctgggatt 75791 Query: 691 ccctcctcagaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcct 750 || |||||| ||||||||| ||| |||||||||| || |||||||| ||||||| |||| Sbjct: 75792 ccttcctcaaaaatttctccagggtttcaaccaaaagctgctcaaagaagccatgttcct 75851 Query: 751 ctttcctgacatccttgtaaccataccgtgcaacacaa 788 |||||||||||||||||||||||||||||||||||||| Sbjct: 75852 ctttcctgacatccttgtaaccataccgtgcaacacaa 75889 Score = 48.1 bits (24), Expect = 0.044 Identities = 30/32 (93%) Strand = Plus / Plus Query: 547 catcacccggtctctgatcagaaagcagtgga 578 |||||||| | ||||||||||||||||||||| Sbjct: 75651 catcacccagcctctgatcagaaagcagtgga 75682
>dbj|AP005637.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0711A01 Length = 162400 Score = 260 bits (131), Expect = 6e-66 Identities = 218/247 (88%) Strand = Plus / Plus Query: 240 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 299 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 124736 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 124795 Query: 300 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 359 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 124796 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 124855 Query: 360 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 419 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 124856 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 124915 Query: 420 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 479 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 124916 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 124975 Query: 480 tcttctg 486 ||||||| Sbjct: 124976 tcttctg 124982 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Plus Query: 631 cagacacatcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggctt 690 |||| ||||| ||||||||| | |||||||||| | ||||| || | |||||||| || Sbjct: 125121 cagaaacatcgtcacgctctactgccattgcgcttgcttcaagtgccatttcctgggatt 125180 Query: 691 ccctcctcagaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcct 750 || |||||| ||||||||| ||| |||||||||| || |||||||| ||||||| |||| Sbjct: 125181 ccttcctcaaaaatttctccagggtttcaaccaaaagctgctcaaagaagccatgttcct 125240 Query: 751 ctttcctgacatccttgtaaccataccgtgcaacacaa 788 |||||||||||||||||||||||||||||||||||||| Sbjct: 125241 ctttcctgacatccttgtaaccataccgtgcaacacaa 125278 Score = 48.1 bits (24), Expect = 0.044 Identities = 30/32 (93%) Strand = Plus / Plus Query: 547 catcacccggtctctgatcagaaagcagtgga 578 |||||||| | ||||||||||||||||||||| Sbjct: 125040 catcacccagcctctgatcagaaagcagtgga 125071
>dbj|AK099766.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095A12, full insert sequence Length = 4054 Score = 260 bits (131), Expect = 6e-66 Identities = 218/247 (88%) Strand = Plus / Minus Query: 240 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 299 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 3748 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 3689 Query: 300 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 359 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 3688 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 3629 Query: 360 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 419 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 3628 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 3569 Query: 420 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 479 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 3568 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 3509 Query: 480 tcttctg 486 ||||||| Sbjct: 3508 tcttctg 3502 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Minus Query: 631 cagacacatcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggctt 690 |||| ||||| ||||||||| | |||||||||| | ||||| || | |||||||| || Sbjct: 3363 cagaaacatcgtcacgctctactgccattgcgcttgcttcaagtgccatttcctgggatt 3304 Query: 691 ccctcctcagaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcct 750 || |||||| ||||||||| ||| |||||||||| || |||||||| ||||||| |||| Sbjct: 3303 ccttcctcaaaaatttctccagggtttcaaccaaaagctgctcaaagaagccatgttcct 3244 Query: 751 ctttcctgacatccttgtaaccataccgtgcaacacaa 788 |||||||||||||||||||||||||||||||||||||| Sbjct: 3243 ctttcctgacatccttgtaaccataccgtgcaacacaa 3206 Score = 48.1 bits (24), Expect = 0.044 Identities = 30/32 (93%) Strand = Plus / Minus Query: 547 catcacccggtctctgatcagaaagcagtgga 578 |||||||| | ||||||||||||||||||||| Sbjct: 3444 catcacccagcctctgatcagaaagcagtgga 3413
>dbj|AK070831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063B21, full insert sequence Length = 3081 Score = 260 bits (131), Expect = 6e-66 Identities = 218/247 (88%) Strand = Plus / Minus Query: 240 agccccgatcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttc 299 |||||| |||| |||||||| |||||||| |||||||| |||||||||||||| | |||| Sbjct: 2745 agccccaatcacaccatgtatgtcatcccgacacgcataatgttcgagtgagggaccttc 2686 Query: 300 aaggttgcggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatg 359 ||||||||||| ||||||||||| |||||||| ||||| |||||||| || ||||||||| Sbjct: 2685 aaggttgcggttccagccctgcaattcctcctgaggaacgcgtagaagtaattgatgatg 2626 Query: 360 aacttctttgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatat 419 |||||||| |||||||| |||| ||||||||||||||| || || ||||||||||| ||| Sbjct: 2625 aacttcttcgtgaagaacgattccttcctcgccctcacgtcaccgtgtgccaagaggtat 2566 Query: 420 gtgaacccagatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtct 479 ||||| ||||| || |||||||| ||||||| | | ||||| ||||| |||||||||||| Sbjct: 2565 gtgaatccagaagctatggcttctctcagtgactccagctcatactccaagctggggtct 2506 Query: 480 tcttctg 486 ||||||| Sbjct: 2505 tcttctg 2499 Score = 147 bits (74), Expect = 6e-32 Identities = 137/158 (86%) Strand = Plus / Minus Query: 631 cagacacatcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggctt 690 |||| ||||| ||||||||| | |||||||||| | ||||| || | |||||||| || Sbjct: 2360 cagaaacatcgtcacgctctactgccattgcgcttgcttcaagtgccatttcctgggatt 2301 Query: 691 ccctcctcagaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcct 750 || |||||| ||||||||| ||| |||||||||| || |||||||| ||||||| |||| Sbjct: 2300 ccttcctcaaaaatttctccagggtttcaaccaaaagctgctcaaagaagccatgttcct 2241 Query: 751 ctttcctgacatccttgtaaccataccgtgcaacacaa 788 |||||||||||||||||||||||||||||||||||||| Sbjct: 2240 ctttcctgacatccttgtaaccataccgtgcaacacaa 2203 Score = 48.1 bits (24), Expect = 0.044 Identities = 30/32 (93%) Strand = Plus / Minus Query: 547 catcacccggtctctgatcagaaagcagtgga 578 |||||||| | ||||||||||||||||||||| Sbjct: 2441 catcacccagcctctgatcagaaagcagtgga 2410
>gb|AY106754.1| Zea mays PCO067360 mRNA sequence Length = 1181 Score = 244 bits (123), Expect = 4e-61 Identities = 228/263 (86%) Strand = Plus / Minus Query: 248 tcagaccatgtacgtcatccctacacgcatgatgttcgagtgaggcatcttcaaggttgc 307 |||||||||||||||||| || ||||||||||||||||| || || | ||||| |||||| Sbjct: 884 tcagaccatgtacgtcataccaacacgcatgatgttcgaatgggggaccttcagggttgc 825 Query: 308 ggtgccagccctgcagttcctcctcaggaaagcgtagaaatagttgatgatgaacttctt 367 ||||| ||||||||||||||||| ||||| || |||||||||||||||| ||||||||| Sbjct: 824 agtgcccgccctgcagttcctcctgaggaacgcatagaaatagttgatgacgaacttctt 765 Query: 368 tgtgaagaatgattgcttcctcgccctcacatcgccatgtgccaagagatatgtgaaccc 427 ||||||| ||||| |||||||||||||||||| || ||||| | |||||| || ||||| Sbjct: 764 cgtgaagactgattccttcctcgccctcacatctccgtgtgctaggagatacgtaaaccc 705 Query: 428 agatgccatggcttccctcagtgccgcgagctcgtactctaagctggggtcttcttctgc 487 ||| ||||||||||| ||||| || | |||||||||||||||| || ||||||||| Sbjct: 704 agaggccatggcttctctcagagcagacagctcgtactctaagccaggatcttcttctaa 645 Query: 488 agacatggagctagagggtagca 510 |||||||||||| ||||| |||| Sbjct: 644 agacatggagctggaggggagca 622 Score = 151 bits (76), Expect = 4e-33 Identities = 130/148 (87%) Strand = Plus / Minus Query: 639 tcatcacgctctgcctccattgcgctcacctcaagcgcgagttcctgggcttccctcctc 698 |||||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||| Sbjct: 496 tcatcacgctctgcctccattgtgctcgcctccagcgcaatttcctgggcttccctcctg 437 Query: 699 agaaatttctctaggctttcaaccaagagatgctcaaatgagccatggtcctctttcctg 758 |||||||| || ||||| ||||||| || |||||||| |||||||||| |||||||| Sbjct: 436 agaaatttttccaggctctcaaccagaagttgctcaaagaagccatggtcttctttccta 377 Query: 759 acatccttgtaaccataccgtgcaacac 786 || |||||||||||||| |||||||||| Sbjct: 376 acgtccttgtaaccatagcgtgcaacac 349 Score = 44.1 bits (22), Expect = 0.69 Identities = 28/30 (93%) Strand = Plus / Minus Query: 557 tctctgatcagaaagcagtggagtgtgcag 586 |||||| ||||||||||||||||| ||||| Sbjct: 575 tctctggtcagaaagcagtggagtttgcag 546
>dbj|AB257217.1| Phragmites australis PhaHAK4 mRNA for potassium transporter, complete cds, strain: Utsunomiya Length = 2484 Score = 79.8 bits (40), Expect = 1e-11 Identities = 58/64 (90%) Strand = Plus / Minus Query: 724 agagatgctcaaatgagccatggtcctctttcctgacatccttgtaaccataccgtgcaa 783 |||| |||||||| ||||||| ||||||||||| |||||||| |||||||||||||||| Sbjct: 2159 agagttgctcaaagaagccatgatcctctttcctaacatccttataaccataccgtgcaa 2100 Query: 784 caca 787 |||| Sbjct: 2099 caca 2096 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 246 gatcagaccatgtacgtcatccctacacgcatgatgttcgagtgagg 292 |||||||||||||| ||||| || |||||||||||||| |||||||| Sbjct: 2213 gatcagaccatgtatgtcataccgacacgcatgatgtttgagtgagg 2167 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Minus Query: 151 gtacaatccctaaactacctgctggtgtagcattccatccaagatg 196 ||||||||||||||||||| |||||||||| || ||| |||||||| Sbjct: 2290 gtacaatccctaaactaccagctggtgtagtatcccacccaagatg 2245
>gb|AY111302.1| Zea mays CL24961_1 mRNA sequence Length = 637 Score = 69.9 bits (35), Expect = 1e-08 Identities = 38/39 (97%) Strand = Plus / Plus Query: 317 cctgcagttcctcctcaggaaagcgtagaaatagttgat 355 |||||||||||||||||||||||| |||||||||||||| Sbjct: 292 cctgcagttcctcctcaggaaagcatagaaatagttgat 330
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 317 cctgcagttcctcctcaggaaagcgtagaaatagttgat 355 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 19325595 cctgcagttcctcctcaagaaggcgtagaaatagttgat 19325633
>dbj|AP005185.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0409B11 Length = 168354 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 317 cctgcagttcctcctcaggaaagcgtagaaatagttgat 355 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 15133 cctgcagttcctcctcaagaaggcgtagaaatagttgat 15171
>dbj|AK106582.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E03, full insert sequence Length = 1549 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 317 cctgcagttcctcctcaggaaagcgtagaaatagttgat 355 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1255 cctgcagttcctcctcaagaaggcgtagaaatagttgat 1217
>dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1163_G04 Length = 106253 Score = 61.9 bits (31), Expect = 3e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 317 cctgcagttcctcctcaggaaagcgtagaaatagttgat 355 ||||||||||||||||| ||| ||||||||||||||||| Sbjct: 101821 cctgcagttcctcctcaagaaggcgtagaaatagttgat 101859
>gb|AC007569.22| Homo sapiens 12 BAC RP11-689B22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111074 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Minus Query: 747 tcctctttcctgacatccttgt 768 |||||||||||||||||||||| Sbjct: 61255 tcctctttcctgacatccttgt 61234
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 44.1 bits (22), Expect = 0.69 Identities = 22/22 (100%) Strand = Plus / Plus Query: 594 gcaggagcagcaggcgattgaa 615 |||||||||||||||||||||| Sbjct: 4188659 gcaggagcagcaggcgattgaa 4188680
>gb|AY485619.1| Cryphonectria parasitica DNA-dependent RNA polymerase II second largest subunit gene, partial cds Length = 2889 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 229 aggcgcagccgagccccgatc 249 ||||||||||||||||||||| Sbjct: 63 aggcgcagccgagccccgatc 83
>gb|AC158661.7| Mus musculus 6 BAC RP23-31E23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 181763 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 gaaaatgttggcaagaataca 68 ||||||||||||||||||||| Sbjct: 164192 gaaaatgttggcaagaataca 164212
>gb|AC116703.10| Mus musculus chromosome 6, clone RP23-16O17, complete sequence Length = 202915 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 48 gaaaatgttggcaagaataca 68 ||||||||||||||||||||| Sbjct: 10599 gaaaatgttggcaagaataca 10619 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,519,977 Number of Sequences: 3902068 Number of extensions: 6519977 Number of successful extensions: 122591 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 122412 Number of HSP's gapped (non-prelim): 177 length of query: 788 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 765 effective length of database: 17,143,297,704 effective search space: 13114622743560 effective search space used: 13114622743560 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)