ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234864.1|HVU234864 Hordeum vulgare genomic DNA fragment; c... 278 2e-71
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 105 2e-19
3gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare str... 105 2e-19
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5dbj|AK070228.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 2e-19
6emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, ... 48 0.036
7gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chrom... 48 0.036
8gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 44 0.57
9gb|BC052247.1| Homo sapiens transmembrane protein 1, mRNA (cDNA ... 42 2.2
10ref|NM_001001723.1| Homo sapiens transmembrane protein 1 (TMEM1)... 42 2.2
11ref|NM_003274.3| Homo sapiens transmembrane protein 1 (TMEM1), t... 42 2.2
12gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete se... 42 2.2
13gb|BC071569.1| Homo sapiens transmembrane protein 1, mRNA (cDNA ... 42 2.2
14emb|AL357497.17| Human DNA sequence from clone RP11-637O19 on ch... 42 2.2
15emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 m... 42 2.2
16gb|BC046241.1| Homo sapiens transmembrane protein 1, transcript ... 42 2.2
17dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete an... 42 2.2
18emb|CR597587.1| full-length cDNA clone CS0DJ012YG20 of T cells (... 42 2.2
19gb|DQ355955.1| Oryza sativa (indica cultivar-group) cultivar Teq... 42 2.2
20gb|DQ355953.1| Oryza sativa (indica cultivar-group) cultivar Teq... 42 2.2
21gb|AC034204.6| Homo sapiens chromosome 5 clone CTB-192J21, compl... 42 2.2
22gb|AC034243.7| Homo sapiens chromosome 5 clone RP1-204O11, compl... 42 2.2
23gb|BC094823.1| Homo sapiens transmembrane protein 1, transcript ... 42 2.2
24dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
25dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 42 2.2
26dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 2.2
27dbj|AB042297.1| Homo sapiens PTS gene for 6-pyruvoyltetrahydropt... 42 2.2
28gb|U61500.1|HSU61500 Human GT334 protein (GT334) gene mRNA, comp... 42 2.2
29gb|U19252.1|HSU19252 Human putative transmembrane protein mRNA, ... 42 2.2
30emb|AL928987.13| Mouse DNA sequence from clone RP23-55M21 on chr... 42 2.2
31gb|U61501.1|HSGTP01 Human GT334 protein (GT334) gene, exon 1 42 2.2
32dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 42 2.2
33gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipie... 40 8.9
34gb|BT018367.1| Zea mays clone EL01N0204F10.d mRNA sequence 40 8.9
35gb|BC021446.1| Mus musculus pseudouridine synthase 1, mRNA (cDNA... 40 8.9
36gb|AC140313.2| Mus musculus BAC clone RP24-324C6 from chromosome... 40 8.9
37ref|XM_818103.1| Trypanosoma brucei TREU927 proteasome regulator... 40 8.9
38gb|AC127593.4| Mus musculus BAC clone RP23-390G15 from chromosom... 40 8.9
39gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, compl... 40 8.9
40gb|AC145784.1| Pan troglodytes BAC clone RP43-51D12 from 7, comp... 40 8.9
41emb|CR361548.8| Zebrafish DNA sequence from clone CH211-140M22 i... 40 8.9
42ref|NM_019700.4| Mus musculus pseudouridine synthase 1 (Pus1), t... 40 8.9
43ref|NM_001025561.2| Mus musculus pseudouridine synthase 1 (Pus1)... 40 8.9
44emb|AL359963.29| Human DNA sequence from clone RP11-18A3 on chro... 40 8.9
45emb|AL078605.30|HSJ894D12 Human DNA sequence from clone RP5-894D... 40 8.9
46gb|BC098689.1| Rattus norvegicus pseudouridine synthase 1 (predi... 40 8.9
47gb|BC034359.1| Mus musculus pseudouridine synthase 1, mRNA (cDNA... 40 8.9
48gb|AC005045.2| Homo sapiens BAC clone CTB-12D21 from 7q11.2-q22,... 40 8.9
49dbj|AK089258.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 8.9
50dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
51dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
52gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complet... 40 8.9
53dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 40 8.9
54emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in ... 40 8.9
55dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
56gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cance... 40 8.9
57gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 8.9
58emb|BX004789.7| Mouse DNA sequence from clone RP24-132K7 on chro... 40 8.9
59ref|NM_001025563.1| Rattus norvegicus pseudouridine synthase 1 (... 40 8.9
60emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4,... 40 8.9
61emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chro... 40 8.9
62dbj|AB041563.1| Mus musculus brain cDNA, clone MNCb-0873, simila... 40 8.9 
>emb|AJ234864.1|HVU234864 Hordeum vulgare genomic DNA fragment; clone MWG2257.rev
          Length = 176

 Score =  278 bits (140), Expect = 2e-71
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 512 cagagcagctggagcccgagcttgagcggcgccggcggcgtgggacggctcgtcgggtgc 571
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cagagcagctggagcccgagcttgagcggcgccggcggcgtgggacggctcgtcgggtgc 60

                                                                       
Query: 572 aggaacttgcagttagggcaggccgggcacgcgcggcacatcatcaccagcatgtggcac 631
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aggaacttgcagttagggcaggccgggcacgcgcggcacatcatcaccagcatgtggcac 120

                               
Query: 632 cgcatgcacacggcagccac 651
           ||||||||||||||||||||
Sbjct: 121 cgcatgcacacggcagccac 140
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Plus

                                                                           
Query: 566     gggtgcaggaacttgcagttagggcaggccgggcacgcgcggcacatcatcaccagcatg 625
               ||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 4731010 gggtgcacgaacttgcagttggggcaggccggccactcgcggcacatcatcaccagcatg 4731069

                        
Query: 626     tggcaccgc 634
               |||||||||
Sbjct: 4731070 tggcaccgc 4731078



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                               
Query: 500     tagtccctgcagcagagcagctggagcccgagcttgagcggcgccggc 547
               |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4730923 tagtccttgcagcagagcagctggagcccgagcttgagcggcgccggc 4730970
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>gb|AC116604.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
              OSJNBb0019D17, from chromosome 3, complete sequence
          Length = 129658

 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Minus

                                                                          
Query: 566    gggtgcaggaacttgcagttagggcaggccgggcacgcgcggcacatcatcaccagcatg 625
              ||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 104445 gggtgcacgaacttgcagttggggcaggccggccactcgcggcacatcatcaccagcatg 104386

                       
Query: 626    tggcaccgc 634
              |||||||||
Sbjct: 104385 tggcaccgc 104377



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                              
Query: 500    tagtccctgcagcagagcagctggagcccgagcttgagcggcgccggc 547
              |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 104532 tagtccttgcagcagagcagctggagcccgagcttgagcggcgccggc 104485
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Plus

                                                                           
Query: 566     gggtgcaggaacttgcagttagggcaggccgggcacgcgcggcacatcatcaccagcatg 625
               ||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 4731125 gggtgcacgaacttgcagttggggcaggccggccactcgcggcacatcatcaccagcatg 4731184

                        
Query: 626     tggcaccgc 634
               |||||||||
Sbjct: 4731185 tggcaccgc 4731193



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 47/48 (97%)
 Strand = Plus / Plus

                                                               
Query: 500     tagtccctgcagcagagcagctggagcccgagcttgagcggcgccggc 547
               |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4731038 tagtccttgcagcagagcagctggagcccgagcttgagcggcgccggc 4731085
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>dbj|AK070228.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042L16, full
           insert sequence
          Length = 1389

 Score =  105 bits (53), Expect = 2e-19
 Identities = 65/69 (94%)
 Strand = Plus / Minus

                                                                       
Query: 566 gggtgcaggaacttgcagttagggcaggccgggcacgcgcggcacatcatcaccagcatg 625
           ||||||| |||||||||||| ||||||||||| ||| |||||||||||||||||||||||
Sbjct: 755 gggtgcacgaacttgcagttggggcaggccggccactcgcggcacatcatcaccagcatg 696

                    
Query: 626 tggcaccgc 634
           |||||||||
Sbjct: 695 tggcaccgc 687



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 47/48 (97%)
 Strand = Plus / Minus

                                                           
Query: 500 tagtccctgcagcagagcagctggagcccgagcttgagcggcgccggc 547
           |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 tagtccttgcagcagagcagctggagcccgagcttgagcggcgccggc 795
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>emb|AL161500.2|ATCHRIV12 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 12
          Length = 199759

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 453    attcgaatgcatgcatgcatgatc 476
              ||||||||||||||||||||||||
Sbjct: 126981 attcgaatgcatgcatgcatgatc 127004
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>gb|AF076243.1|AF076243 Arabidopsis thaliana BAC T26N6 from chromosome IV at 19.3 cM, complete
             sequence
          Length = 99384

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 453   attcgaatgcatgcatgcatgatc 476
             ||||||||||||||||||||||||
Sbjct: 26635 attcgaatgcatgcatgcatgatc 26658
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 534     tgagcggcgccggcggcgtggg 555
               ||||||||||||||||||||||
Sbjct: 3160223 tgagcggcgccggcggcgtggg 3160244
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>gb|BC052247.1| Homo sapiens transmembrane protein 1, mRNA (cDNA clone
           IMAGE:5929521), complete cds
          Length = 1718

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 82  cagccggagcccgagcctgagcggcgccg 54
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>ref|NM_001001723.1| Homo sapiens transmembrane protein 1 (TMEM1), transcript variant 2,
           mRNA
          Length = 1764

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 104 cagccggagcccgagcctgagcggcgccg 76
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>ref|NM_003274.3| Homo sapiens transmembrane protein 1 (TMEM1), transcript variant 1,
           mRNA
          Length = 6982

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 104 cagccggagcccgagcctgagcggcgccg 76
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>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence
          Length = 122810

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 106   gcacttaattatatctacgtcatgc 130
             ||||||||||||||||| |||||||
Sbjct: 97190 gcacttaattatatctaggtcatgc 97214
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>gb|BC071569.1| Homo sapiens transmembrane protein 1, mRNA (cDNA clone
           IMAGE:4374082), containing frame-shift errors
          Length = 5282

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 108 cagccggagcccgagcctgagcggcgccg 80
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>emb|AL357497.17| Human DNA sequence from clone RP11-637O19 on chromosome 6 Contains the
             5' end of the GCMB gene for glial cells missing
             (Drosophila) homolog b, a novel gene, the 5' end of the
             gene for a novel protein similar to synaptonemal complex
             protein 2 (SYCP2) and a CpG island, complete sequence
          Length = 82952

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 187   gatcactgccaactccgcctc 207
             |||||||||||||||||||||
Sbjct: 36071 gatcactgccaactccgcctc 36091
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>emb|AL954245.1| Pan troglodytes chromosome 22 clone PTB-047B05 map 22q22.3, complete
             sequence
          Length = 176622

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 517   cagctggagcccgagcttgagcggcgccg 545
             |||| ||||||||||| ||||||||||||
Sbjct: 55112 cagccggagcccgagcctgagcggcgccg 55084
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>gb|BC046241.1| Homo sapiens transmembrane protein 1, transcript variant 2, mRNA
           (cDNA clone IMAGE:5929666), complete cds
          Length = 1718

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 82  cagccggagcccgagcctgagcggcgccg 54
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>dbj|AB001523.1| Homo sapiens gene for TMEM1 and PWP2,complete and partial cds
          Length = 122638

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 517   cagctggagcccgagcttgagcggcgccg 545
             |||| ||||||||||| ||||||||||||
Sbjct: 25512 cagccggagcccgagcctgagcggcgccg 25484
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>emb|CR597587.1| full-length cDNA clone CS0DJ012YG20 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 1430

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 110 cagccggagcccgagcctgagcggcgccg 82
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>gb|DQ355955.1| Oryza sativa (indica cultivar-group) cultivar Teqing receptor
           kinase (TRKg) pseudogene, complete sequence; receptor
           kinase TRKc (TRKc) gene, complete cds; and receptor
           kinase (TRKh) and receptor kinase (TRKi) pseudogenes,
           complete sequence
          Length = 31515

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 527 ccgagcttgagcggcgccggcggcg 551
           |||||||||||||||| ||||||||
Sbjct: 483 ccgagcttgagcggcgacggcggcg 459
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>gb|DQ355953.1| Oryza sativa (indica cultivar-group) cultivar Teqing receptor kinase
             (TRKd) pseudogene, complete sequence; and receptor kinase
             TRKa (TRKa), receptor kinase TRKe (TRKe), and receptor
             kinase TRKb (TRKb) genes, complete cds
          Length = 33301

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 527   ccgagcttgagcggcgccggcggcg 551
             |||||||||||||||| ||||||||
Sbjct: 10436 ccgagcttgagcggcgacggcggcg 10460
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>gb|AC034204.6| Homo sapiens chromosome 5 clone CTB-192J21, complete sequence
          Length = 61027

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 609   acatcatcaccagcatgtggc 629
             |||||||||||||||||||||
Sbjct: 41259 acatcatcaccagcatgtggc 41239
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>gb|AC034243.7| Homo sapiens chromosome 5 clone RP1-204O11, complete sequence
          Length = 191308

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 609   acatcatcaccagcatgtggc 629
             |||||||||||||||||||||
Sbjct: 53152 acatcatcaccagcatgtggc 53132
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>gb|BC094823.1| Homo sapiens transmembrane protein 1, transcript variant 2, mRNA
           (cDNA clone IMAGE:5925628), complete cds
          Length = 1718

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 82  cagccggagcccgagcctgagcggcgccg 54
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>dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-356J5, complete
              sequence
          Length = 165678

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 278    aacgatatttagttgctacta 298
              |||||||||||||||||||||
Sbjct: 121072 aacgatatttagttgctacta 121052
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>dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-239P2, complete
           sequence
          Length = 176485

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 278 aacgatatttagttgctacta 298
           |||||||||||||||||||||
Sbjct: 864 aacgatatttagttgctacta 844
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>dbj|AP001753.1| Homo sapiens genomic DNA, chromosome 21q, section 97/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 517   cagctggagcccgagcttgagcggcgccg 545
             |||| ||||||||||| ||||||||||||
Sbjct: 67047 cagccggagcccgagcctgagcggcgccg 67019
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>dbj|AB042297.1| Homo sapiens PTS gene for 6-pyruvoyltetrahydropterin synthase, complete
             cds
          Length = 85084

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 278   aacgatatttagttgctacta 298
             |||||||||||||||||||||
Sbjct: 61092 aacgatatttagttgctacta 61072
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>gb|U61500.1|HSU61500 Human GT334 protein (GT334) gene mRNA, complete cds
          Length = 6661

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 88  cagccggagcccgagcctgagcggcgccg 60
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>gb|U19252.1|HSU19252 Human putative transmembrane protein mRNA, complete cds
          Length = 5107

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 72  cagccggagcccgagcctgagcggcgccg 44
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>emb|AL928987.13| Mouse DNA sequence from clone RP23-55M21 on chromosome 2, complete
             sequence
          Length = 150363

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   atcattgtttatttcttgcac 318
             |||||||||||||||||||||
Sbjct: 65519 atcattgtttatttcttgcac 65539
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>gb|U61501.1|HSGTP01 Human GT334 protein (GT334) gene, exon 1
          Length = 310

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 517 cagctggagcccgagcttgagcggcgccg 545
           |||| ||||||||||| ||||||||||||
Sbjct: 88  cagccggagcccgagcctgagcggcgccg 60
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>dbj|AP001054.1| Homo sapiens genomic DNA, chromosome 21, clone:KB218C10, MX1-D21S171
              region, complete sequence
          Length = 120871

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 517    cagctggagcccgagcttgagcggcgccg 545
              |||| ||||||||||| ||||||||||||
Sbjct: 118361 cagccggagcccgagcctgagcggcgccg 118333
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>gb|AC167665.2| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940135D9, complete sequence
          Length = 93659

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 536   agcggcgccggcggcgtggg 555
             ||||||||||||||||||||
Sbjct: 49188 agcggcgccggcggcgtggg 49169
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>gb|BT018367.1| Zea mays clone EL01N0204F10.d mRNA sequence
          Length = 1723

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 536 agcggcgccggcggcgtggg 555
           ||||||||||||||||||||
Sbjct: 187 agcggcgccggcggcgtggg 168
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>gb|BC021446.1| Mus musculus pseudouridine synthase 1, mRNA (cDNA clone MGC:29221
           IMAGE:5038201), complete cds
          Length = 1708

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 239 ggcaggccgggcacgcgcgg 220
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>gb|AC140313.2| Mus musculus BAC clone RP24-324C6 from chromosome 15, complete sequence
          Length = 215861

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    cacatcatcaccagcatgtg 627
              ||||||||||||||||||||
Sbjct: 110409 cacatcatcaccagcatgtg 110390
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>ref|XM_818103.1| Trypanosoma brucei TREU927 proteasome regulatory ATPase subunit 6
           (Tb10.6k15.0580) partial mRNA
          Length = 1227

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 557 cggctcgtcgggtgcaggaa 576
           ||||||||||||||||||||
Sbjct: 975 cggctcgtcgggtgcaggaa 956
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>gb|AC127593.4| Mus musculus BAC clone RP23-390G15 from chromosome 10, complete sequence
          Length = 214856

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 608    cacatcatcaccagcatgtg 627
              ||||||||||||||||||||
Sbjct: 193028 cacatcatcaccagcatgtg 193009
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>gb|AC098889.3| Mus musculus BAC clone RP23-122O10 from 10, complete sequence
          Length = 204770

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 608    cacatcatcaccagcatgtg 627
              ||||||||||||||||||||
Sbjct: 200689 cacatcatcaccagcatgtg 200708
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>gb|AC145784.1| Pan troglodytes BAC clone RP43-51D12 from 7, complete sequence
          Length = 23736

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 302 ttgtttatttcttgcacatg 321
           ||||||||||||||||||||
Sbjct: 475 ttgtttatttcttgcacatg 494
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>emb|CR361548.8| Zebrafish DNA sequence from clone CH211-140M22 in linkage group 1,
              complete sequence
          Length = 146409

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 608    cacatcatcaccagcatgtg 627
              ||||||||||||||||||||
Sbjct: 144001 cacatcatcaccagcatgtg 144020
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>ref|NM_019700.4| Mus musculus pseudouridine synthase 1 (Pus1), transcript variant 2,
           mRNA
          Length = 1838

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 363 ggcaggccgggcacgcgcgg 344
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>ref|NM_001025561.2| Mus musculus pseudouridine synthase 1 (Pus1), transcript variant 1,
           mRNA
          Length = 1895

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 363 ggcaggccgggcacgcgcgg 344
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>emb|AL359963.29| Human DNA sequence from clone RP11-18A3 on chromosome 9 Contains a NADH
              dehydrogenase subunit 2 pseudogene, the 5' end of the
              EPB41L4B gene for erythrocyte membrane protein band 4.1
              like 4B, the 3' end of the PTPN3 gene for protein tyrosine
              phosphatase (non-receptor type 3), and one CpG island,
              complete sequence
          Length = 134979

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 583    gttagggcaggccgggcacg 602
              ||||||||||||||||||||
Sbjct: 129715 gttagggcaggccgggcacg 129696
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>emb|AL078605.30|HSJ894D12 Human DNA sequence from clone RP5-894D12 on chromosome 6q26-27 Contains
             the 5' end of the gene for KIAA1838, the DLL1 gene for
             delta-like 1 (mouse) homolog, the 3' end of a novel gene
             and 5 CpG islands, complete sequence
          Length = 119563

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 539   ggcgccggcggcgtgggacg 558
             ||||||||||||||||||||
Sbjct: 85621 ggcgccggcggcgtgggacg 85640
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>gb|BC098689.1| Rattus norvegicus pseudouridine synthase 1 (predicted), mRNA (cDNA
           clone MGC:112655 IMAGE:7386086), complete cds
          Length = 1809

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 342 ggcaggccgggcacgcgcgg 323
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>gb|BC034359.1| Mus musculus pseudouridine synthase 1, mRNA (cDNA clone MGC:11791
           IMAGE:3595162), complete cds
          Length = 1815

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 334 ggcaggccgggcacgcgcgg 315
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>gb|AC005045.2| Homo sapiens BAC clone CTB-12D21 from 7q11.2-q22, complete sequence
          Length = 123947

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    ttgtttatttcttgcacatg 321
              ||||||||||||||||||||
Sbjct: 120089 ttgtttatttcttgcacatg 120070
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>dbj|AK089258.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630107G06
           product:pseudouridine synthase 1, full insert sequence
          Length = 1809

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 363 ggcaggccgggcacgcgcgg 344
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 537      gcggcgccggcggcgtggga 556
                ||||||||||||||||||||
Sbjct: 18323733 gcggcgccggcggcgtggga 18323714
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       cgatcgatcgccatgcgcat 53
                ||||||||||||||||||||
Sbjct: 26104363 cgatcgatcgccatgcgcat 26104382
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>gb|AC073283.8| Homo sapiens BAC clone RP11-761B3 from 2, complete sequence
          Length = 181720

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 509    cagcagagcagctggagcccgagc 532
              |||||||||||||||||| |||||
Sbjct: 119426 cagcagagcagctggagctcgagc 119449
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 223     tcggccttggcctctacgag 242
               ||||||||||||||||||||
Sbjct: 1406640 tcggccttggcctctacgag 1406659
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>emb|BX294175.5| Zebrafish DNA sequence from clone DKEY-281I8 in linkage group 1,
             complete sequence
          Length = 165355

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   cacatcatcaccagcatgtg 627
             ||||||||||||||||||||
Sbjct: 79452 cacatcatcaccagcatgtg 79433
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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    cgatcgatcgccatgcgcat 53
             ||||||||||||||||||||
Sbjct: 48294 cgatcgatcgccatgcgcat 48313
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>gb|AC152984.2| Mus musculus 6 BAC RP23-462B3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 185001

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ctatcattgtttatttcttg 315
             ||||||||||||||||||||
Sbjct: 97764 ctatcattgtttatttcttg 97783
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 589     gcaggccgggcacgcgcggc 608
               ||||||||||||||||||||
Sbjct: 1335491 gcaggccgggcacgcgcggc 1335472
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>emb|BX004789.7| Mouse DNA sequence from clone RP24-132K7 on chromosome 4, complete
             sequence
          Length = 79922

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 608   cacatcatcaccagcatgtg 627
             ||||||||||||||||||||
Sbjct: 41893 cacatcatcaccagcatgtg 41874
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>ref|NM_001025563.1| Rattus norvegicus pseudouridine synthase 1 (Pus1), mRNA
          Length = 1809

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 342 ggcaggccgggcacgcgcgg 323
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>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
             complete sequence
          Length = 133413

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 537   gcggcgccggcggcgtggga 556
             ||||||||||||||||||||
Sbjct: 25656 gcggcgccggcggcgtggga 25637
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>emb|AL845280.4| Mouse DNA sequence from clone RP23-265L1 on chromosome X, complete
              sequence
          Length = 142846

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 608    cacatcatcaccagcatgtg 627
              ||||||||||||||||||||
Sbjct: 102354 cacatcatcaccagcatgtg 102373
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>dbj|AB041563.1| Mus musculus brain cDNA, clone MNCb-0873, similar to Mus musculus
           pseudouridine synthase 1 (Pus1) mRNA
          Length = 1897

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 588 ggcaggccgggcacgcgcgg 607
           ||||||||||||||||||||
Sbjct: 364 ggcaggccgggcacgcgcgg 345


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,883,597
Number of Sequences: 3902068
Number of extensions: 4883597
Number of successful extensions: 123276
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122611
Number of HSP's gapped (non-prelim): 665
length of query: 651
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 628
effective length of database: 17,143,297,704
effective search space: 10765990958112
effective search space used: 10765990958112
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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