ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39g17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
2dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
3dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 7e-53
4gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome... 163 9e-37
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 163 9e-37
6dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic D... 68 4e-08
7ref|NM_190018.1| Oryza sativa (japonica cultivar-group), predic... 64 6e-07
8dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
9dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
10dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic D... 64 6e-07
11dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
12dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 6e-07
13dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
14gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 48 0.037
15gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18... 48 0.037
16ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glyc... 48 0.037
17gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochon... 44 0.58
18gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial... 44 0.58
19ref|XM_473160.1| Oryza sativa (japonica cultivar-group), predic... 42 2.3
20emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
21emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4,... 42 2.3
22emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chr... 42 2.3
23dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
24dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
25dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
26gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosom... 40 9.0
27ref|XM_463507.1| Oryza sativa (japonica cultivar-group), predic... 40 9.0
28gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, co... 40 9.0
29gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, co... 40 9.0
30gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 con... 40 9.0
31gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete se... 40 9.0
32gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (sp... 40 9.0
33gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (sp... 40 9.0
34ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (... 40 9.0
35gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 9.0
36gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, compl... 40 9.0
37gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 9.0
38dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
39dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome 40 9.0
40dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
41gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_... 40 9.0
42dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
43dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
44dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 9.0
45gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome... 40 9.0
46gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 gen... 40 9.0
47gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 gen... 40 9.0
48dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds 40 9.0
49dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0 
>dbj|AK121935.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107A08, full
            insert sequence
          Length = 2096

 Score =  216 bits (109), Expect = 7e-53
 Identities = 215/249 (86%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                        
Query: 222  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1762 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1703

                                                                        
Query: 282  accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
            ||| | |||||||||   |||  |||||||||||| |||||||||||||  | |||||||
Sbjct: 1702 acc-tggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtag 1644

                                                                        
Query: 342  ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
            || || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 1643 ccgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgac 1584

                                                                        
Query: 402  ccgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaac 461
            ||||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| 
Sbjct: 1583 ccgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaa 1524

                     
Query: 462  tcgtcgtcg 470
            |||||||||
Sbjct: 1523 tcgtcgtcg 1515



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 507  gctccgttctcgtggatcatgaccacagggttcttgta 544
            ||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1478 gctccattctcatggatcatgacaatagggttcttgta 1441
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>dbj|AK121679.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069H08, full
            insert sequence
          Length = 2059

 Score =  216 bits (109), Expect = 7e-53
 Identities = 215/249 (86%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                        
Query: 222  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1719 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1660

                                                                        
Query: 282  accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
            ||| | |||||||||   |||  |||||||||||| |||||||||||||  | |||||||
Sbjct: 1659 acc-tggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtag 1601

                                                                        
Query: 342  ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
            || || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 1600 ccgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgac 1541

                                                                        
Query: 402  ccgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaac 461
            ||||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| 
Sbjct: 1540 ccgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaa 1481

                     
Query: 462  tcgtcgtcg 470
            |||||||||
Sbjct: 1480 tcgtcgtcg 1472



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 507  gctccgttctcgtggatcatgaccacagggttcttgta 544
            ||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1435 gctccattctcatggatcatgacaatagggttcttgta 1398
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>dbj|AK102869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111O12, full
            insert sequence
          Length = 1993

 Score =  216 bits (109), Expect = 7e-53
 Identities = 215/249 (86%), Gaps = 1/249 (0%)
 Strand = Plus / Minus

                                                                        
Query: 222  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
            |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 1653 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 1594

                                                                        
Query: 282  accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
            ||| | |||||||||   |||  |||||||||||| |||||||||||||  | |||||||
Sbjct: 1593 acc-tggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtag 1535

                                                                        
Query: 342  ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
            || || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 1534 ccgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgac 1475

                                                                        
Query: 402  ccgttcctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaac 461
            ||||||||| ||||||| || || |||||||||||||||||||| ||  |||||||||| 
Sbjct: 1474 ccgttcctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaa 1415

                     
Query: 462  tcgtcgtcg 470
            |||||||||
Sbjct: 1414 tcgtcgtcg 1406



 Score = 44.1 bits (22), Expect = 0.58
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 507  gctccgttctcgtggatcatgaccacagggttcttgta 544
            ||||| ||||| ||||||||||| | ||||||||||||
Sbjct: 1369 gctccattctcatggatcatgacaatagggttcttgta 1332
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>gb|AC137594.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
             OSJNBa0065A15, complete sequence
          Length = 168806

 Score =  163 bits (82), Expect = 9e-37
 Identities = 164/190 (86%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                         
Query: 222   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
             |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 71059 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 71118

                                                                         
Query: 282   accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
             ||| | |||||||||   |||  |||||||||||| |||||||||||||  | |||||||
Sbjct: 71119 acc-tggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtag 71177

                                                                         
Query: 342   ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
             || || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 71178 ccgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgac 71237

                       
Query: 402   ccgttcctgc 411
             ||||||||||
Sbjct: 71238 ccgttcctgc 71247



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 152/190 (80%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                         
Query: 222   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
             |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 97155 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 97214

                                                                         
Query: 282   accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
             ||| |||||||| || ||| | |||||||||||||  | ||||| || | || |||||||
Sbjct: 97215 acc-tcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtag 97273

                                                                         
Query: 342   ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
             ||  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| 
Sbjct: 97274 ccgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgat 97333

                       
Query: 402   ccgttcctgc 411
             ||||||||||
Sbjct: 97334 ccgttcctgc 97343



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                         
Query: 407   cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 466
             |||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |||||
Sbjct: 71497 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 71556

                 
Query: 467   gtcg 470
             ||||
Sbjct: 71557 gtcg 71560



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 371   tgaccacacgaagtagccctgcacgttcgacccgttcctgc 411
             ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 89265 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 89305



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 513   ttctcgtggatcatgaccacagggttcttgta 544
             ||||| ||||||||||| | ||||||||||||
Sbjct: 71886 ttctcatggatcatgacaatagggttcttgta 71917
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  163 bits (82), Expect = 9e-37
 Identities = 164/190 (86%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                            
Query: 222      ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
                |||||| |||||||||||| |||||||||||||| ||||||   || ||||||||| |||
Sbjct: 19587984 ccggccggagctcgccgccgcggaggaagccggcgtaccaccgcgccgagtgcctctggt 19588043

                                                                            
Query: 282      accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
                ||| | |||||||||   |||  |||||||||||| |||||||||||||  | |||||||
Sbjct: 19588044 acc-tggtcctctccggcgaggcgaagtcgacgccgtagaggccgaagcggaggcggtag 19588102

                                                                            
Query: 342      ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
                || || ||| | ||||||| ||||| ||| ||||||||||||||||||||||||||||||
Sbjct: 19588103 ccgaacaggtactcgaacacgtccaggaacgaccacacgaagtagccctgcacgttcgac 19588162

                          
Query: 402      ccgttcctgc 411
                ||||||||||
Sbjct: 19588163 ccgttcctgc 19588172



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 152/190 (80%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                            
Query: 222      ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
                |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 19614080 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 19614139

                                                                            
Query: 282      accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
                ||| |||||||| || ||| | |||||||||||||  | ||||| || | || |||||||
Sbjct: 19614140 acc-tcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtag 19614198

                                                                            
Query: 342      ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
                ||  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| 
Sbjct: 19614199 ccgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgat 19614258

                          
Query: 402      ccgttcctgc 411
                ||||||||||
Sbjct: 19614259 ccgttcctgc 19614268



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 56/64 (87%)
 Strand = Plus / Plus

                                                                            
Query: 407      cctgctggattggagggtcgcctcgatgtaatcctgcaggtaccgcgacctgaactcgtc 466
                |||| ||||||| || || |||||||||||||||||||| ||  |||||||||| |||||
Sbjct: 19588422 cctgatggattgaagtgtggcctcgatgtaatcctgcagatattgcgacctgaaatcgtc 19588481

                    
Query: 467      gtcg 470
                ||||
Sbjct: 19588482 gtcg 19588485



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                         
Query: 371      tgaccacacgaagtagccctgcacgttcgacccgttcctgc 411
                ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 19606190 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 19606230



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 513      ttctcgtggatcatgaccacagggttcttgta 544
                ||||| ||||||||||| | ||||||||||||
Sbjct: 19588811 ttctcatggatcatgacaatagggttcttgta 19588842
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>dbj|AP006752.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1399_D07, complete sequence
          Length = 65000

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 152/190 (80%), Gaps = 1/190 (0%)
 Strand = Plus / Plus

                                                                         
Query: 222   ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
             |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 23562 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 23621

                                                                         
Query: 282   accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
             ||| |||||||| || ||| | |||||||||||||  | ||||| || | || |||||||
Sbjct: 23622 acc-tcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtag 23680

                                                                         
Query: 342   ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
             ||  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| 
Sbjct: 23681 ccgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgat 23740

                       
Query: 402   ccgttcctgc 411
             ||||||||||
Sbjct: 23741 ccgttcctgc 23750



 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 371   tgaccacacgaagtagccctgcacgttcgacccgttcctgc 411
             ||||||||||||||| ||| ||  |||||| ||||||||||
Sbjct: 15672 tgaccacacgaagtatccccgcgtgttcgatccgttcctgc 15712
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>ref|NM_190018.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1359

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1178 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1135
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                            
Query: 354      tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
                ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 40840163 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 40840120



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      cgccgccacggaggaagccg 253
                ||||||||||||||||||||
Sbjct: 37943132 cgccgccacggaggaagccg 37943151
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>dbj|AP004330.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OSJNBa0052O12
          Length = 167881

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                          
Query: 354    tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
              ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 142809 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 142766
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>dbj|AP003272.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0506E04
          Length = 139934

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                         
Query: 354   tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
             ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 52269 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 52226
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>dbj|AK119221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H04, full
            insert sequence
          Length = 1750

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1363 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1320
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>dbj|AK070499.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054O08, full
            insert sequence
          Length = 1906

 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 41/44 (93%)
 Strand = Plus / Minus

                                                        
Query: 354  tcgaacatgtccacgaatgaccacacgaagtagccctgcacgtt 397
            ||||||| ||||||||||||||||||||||||||| | ||||||
Sbjct: 1362 tcgaacacgtccacgaatgaccacacgaagtagcctttcacgtt 1319
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>dbj|AK066336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013063O11, full
            insert sequence
          Length = 1919

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 149/187 (79%), Gaps = 1/187 (0%)
 Strand = Plus / Minus

                                                                        
Query: 222  ccggcctgagctcgccgccacggaggaagccggcataccacttggcggagtgcctccggt 281
            |||||| |||||||||||| |||||||||||||  |||||    || |||| | |  |||
Sbjct: 1504 ccggccggagctcgccgccgcggaggaagccggagtaccatcgcgccgagttcttgaggt 1445

                                                                        
Query: 282  accctcgtcctctcctcggagttgaagtcgacgccatagaggccgaagcccatgcggtag 341
            ||| |||||||| || ||| | |||||||||||||  | ||||| || | || |||||||
Sbjct: 1444 acc-tcgtcctcgccgcggcggtgaagtcgacgccgcacaggccaaaccgcaagcggtag 1386

                                                                        
Query: 342  ccaaagaggaattcgaacatgtccacgaatgaccacacgaagtagccctgcacgttcgac 401
            ||  ||||||| ||||||||||| |  |  |||||||||||||| ||| ||  |||||| 
Sbjct: 1385 ccgtagaggaactcgaacatgtcgaacatcgaccacacgaagtatccccgcgtgttcgat 1326

                   
Query: 402  ccgttcc 408
            |||||||
Sbjct: 1325 ccgttcc 1319
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 37      aacaatcgactccaaagaagcaga 60
               ||||||||||||||||||||||||
Sbjct: 1522793 aacaatcgactccaaagaagcaga 1522770
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>gb|AC084397.5| Trypanosoma brucei chromosome 6 clone RPCI93-1I18, complete sequence
          Length = 169543

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 37    aacaatcgactccaaagaagcaga 60
             ||||||||||||||||||||||||
Sbjct: 73421 aacaatcgactccaaagaagcaga 73398
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>ref|XM_798280.1| Trypanosoma brucei TREU927 variant surface glycoprotein
            (Tb09.354.0090) partial mRNA
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 37   aacaatcgactccaaagaagcaga 60
            ||||||||||||||||||||||||
Sbjct: 1140 aacaatcgactccaaagaagcaga 1163
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>gb|AF092271.1|AF092271 Pipilo aberti isolate ABTO2249AZ mitochondrial control region,
           partial sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 ccaaaaacaagaaccaatcatc 121
           ||||||||||||||||||||||
Sbjct: 108 ccaaaaacaagaaccaatcatc 87
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>gb|AF092270.1|AF092270 Pipilo aberti isolate AT3CA mitochondrial control region, partial
           sequence
          Length = 276

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 100 ccaaaaacaagaaccaatcatc 121
           ||||||||||||||||||||||
Sbjct: 107 ccaaaaacaagaaccaatcatc 86
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>ref|XM_473160.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1551

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 361  tgtccacgaatgaccacacgaagtagccc 389
            ||||||||| ||||||| |||||||||||
Sbjct: 1384 tgtccacgattgaccacgcgaagtagccc 1356
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>emb|AL606659.3|OSJN00108 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16,
             complete sequence
          Length = 130718

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 361   tgtccacgaatgaccacacgaagtagccc 389
             ||||||||| ||||||| |||||||||||
Sbjct: 19720 tgtccacgattgaccacgcgaagtagccc 19692
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>emb|AL606622.3|OSJN00059 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0004N05,
              complete sequence
          Length = 158601

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 361    tgtccacgaatgaccacacgaagtagccc 389
              ||||||||| ||||||| |||||||||||
Sbjct: 126191 tgtccacgattgaccacgcgaagtagccc 126163
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>emb|AL589738.6| Mouse DNA sequence from clone RP23-322J11 on chromosome 13 Contains the
              Foxq1 gene for forkhead box Q1 (Hfh1l), two novel genes and
              two CpG islands, complete sequence
          Length = 187709

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 592    actggttctttaagtcaaaaa 612
              |||||||||||||||||||||
Sbjct: 182137 actggttctttaagtcaaaaa 182157
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 361      tgtccacgaatgaccacacgaagtagccc 389
                ||||||||| ||||||| |||||||||||
Sbjct: 25639993 tgtccacgattgaccacgcgaagtagccc 25639965
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>dbj|AK068772.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164L07, full
            insert sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 361  tgtccacgaatgaccacacgaagtagccc 389
            ||||||||| ||||||| |||||||||||
Sbjct: 1333 tgtccacgattgaccacgcgaagtagccc 1305
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>dbj|AK066850.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081O13, full
            insert sequence
          Length = 2770

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 361  tgtccacgaatgaccacacgaagtagccc 389
            ||||||||| ||||||| |||||||||||
Sbjct: 2672 tgtccacgattgaccacgcgaagtagccc 2644
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>gb|AC160761.6| Mus musculus BAC clone RP24-163J22 from chromosome 7, complete sequence
          Length = 199480

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 85     aaattgaactcccatccaaa 104
              ||||||||||||||||||||
Sbjct: 145463 aaattgaactcccatccaaa 145482
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>ref|XM_463507.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1842

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 cgccgccacggaggaagccg 253
           ||||||||||||||||||||
Sbjct: 744 cgccgccacggaggaagccg 763
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>gb|AC158974.8| Mus musculus chromosome 15, clone RP24-252G18, complete sequence
          Length = 170539

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 50     aaagaagcagatgtataaat 69
              ||||||||||||||||||||
Sbjct: 170337 aaagaagcagatgtataaat 170356
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>gb|AC125274.12| Mus musculus chromosome 15, clone RP24-157F9, complete sequence
          Length = 188060

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 50    aaagaagcagatgtataaat 69
             ||||||||||||||||||||
Sbjct: 88002 aaagaagcagatgtataaat 88021
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>gb|AY225133.1| Feldmannia irregularis virus a strain FirrV-1 contig A, partial
             sequence
          Length = 55981

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 347   gaggaattcgaacatgtcca 366
             ||||||||||||||||||||
Sbjct: 34304 gaggaattcgaacatgtcca 34323
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>gb|AC182655.2| Populus trichocarpa clone Pop1-121O5, complete sequence
          Length = 87839

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 543   tatttgacctggagatgctccagc 566
             |||||| |||||||||||||||||
Sbjct: 75334 tatttggcctggagatgctccagc 75311
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>gb|BC047222.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA
           (cDNA clone IMAGE:5300744), containing frame-shift
           errors
          Length = 1826

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 255 gagggatcagccacgctggc 274
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>gb|BC028065.1| Homo sapiens transmembrane protease, serine 5 (spinesin), mRNA
           (cDNA clone IMAGE:5199737), with apparent retained
           intron
          Length = 2055

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 292 gagggatcagccacgctggc 311
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>ref|NM_030770.1| Homo sapiens transmembrane protease, serine 5 (spinesin) (TMPRSS5),
           mRNA
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 530 gagggatcagccacgctggc 549
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gccgaagcccatgcggtagc 342
              ||||||||||||||||||||
Sbjct: 449378 gccgaagcccatgcggtagc 449359
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>gb|AC012496.10| Homo sapiens BAC clone RP11-341N18 from 2, complete sequence
          Length = 122770

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    aaaaacaagaaccaatcatc 121
              ||||||||||||||||||||
Sbjct: 101675 aaaaacaagaaccaatcatc 101656
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 308   gtcgacgccatagaggccgaagcc 331
             ||||||||||| ||||||||||||
Sbjct: 43446 gtcgacgccatggaggccgaagcc 43423
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>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A10
          Length = 137348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   cgccgccacggaggaagccg 253
             ||||||||||||||||||||
Sbjct: 24076 cgccgccacggaggaagccg 24095
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>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome
          Length = 860631

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atgaacatttataatgtata 33
              ||||||||||||||||||||
Sbjct: 335729 atgaacatttataatgtata 335710
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>dbj|AK121856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033102G02, full
            insert sequence
          Length = 2439

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 234  cgccgccacggaggaagccg 253
            ||||||||||||||||||||
Sbjct: 1008 cgccgccacggaggaagccg 1027
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>gb|AC007225.2|AC007225 Homo sapiens chromosome 16 clone RPCI-11_480G7, complete sequence
          Length = 218892

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 356   gaacatgtccacgaatgacc 375
             ||||||||||||||||||||
Sbjct: 45149 gaacatgtccacgaatgacc 45130
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>dbj|AK073077.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033015J08, full
           insert sequence
          Length = 2388

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 234 cgccgccacggaggaagccg 253
           ||||||||||||||||||||
Sbjct: 957 cgccgccacggaggaagccg 976
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>dbj|AP002436.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-627G1, complete
              sequence
          Length = 173509

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    gagggatcagccacgctggc 505
              ||||||||||||||||||||
Sbjct: 101959 gagggatcagccacgctggc 101940
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>dbj|AP003402.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-661I21, complete
              sequence
          Length = 187946

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    gagggatcagccacgctggc 505
              ||||||||||||||||||||
Sbjct: 179554 gagggatcagccacgctggc 179535
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>gb|AC150903.2| Mus musculus BAC clone RP23-35B12 from chromosome 7, complete sequence
          Length = 217178

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    aaattgaactcccatccaaa 104
             ||||||||||||||||||||
Sbjct: 80566 aaattgaactcccatccaaa 80585
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>gb|DQ163157.1| Candidatus Hamiltonella defensa clone P020050 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 94  tcccatccaaaaacaagaaccaat 117
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
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>gb|DQ163116.1| Candidatus Hamiltonella defensa clone P010059 genomic sequence
          Length = 1117

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 94  tcccatccaaaaacaagaaccaat 117
           ||||||||||||||| ||||||||
Sbjct: 887 tcccatccaaaaacacgaaccaat 864
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>dbj|AB028140.1| Homo sapiens mRNA for spinesin, complete cds
          Length = 2265

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 486 gagggatcagccacgctggc 505
           ||||||||||||||||||||
Sbjct: 530 gagggatcagccacgctggc 549
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>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0648C09
          Length = 107522

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 234   cgccgccacggaggaagccg 253
             ||||||||||||||||||||
Sbjct: 39408 cgccgccacggaggaagccg 39427


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,889,530
Number of Sequences: 3902068
Number of extensions: 4889530
Number of successful extensions: 91362
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 91102
Number of HSP's gapped (non-prelim): 251
length of query: 661
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 638
effective length of database: 17,143,297,704
effective search space: 10937423935152
effective search space used: 10937423935152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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