ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39g08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_493842.1| Oryza sativa (japonica cultivar-group), mRNA 121 3e-24
2dbj|AK104514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
3dbj|AK102161.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
4dbj|AK061166.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 3e-24
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 88 4e-14
6gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 88 4e-14
7dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
8gb|AY109783.1| Zea mays CL19997_1 mRNA sequence 88 4e-14
9gb|AC121608.3| Mus musculus BAC clone RP23-317M3 from chromosome... 44 0.59
10gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, comp... 42 2.3
11gb|AC109483.3| Homo sapiens chromosome 5 clone RP11-500H9, compl... 42 2.3
12gb|AC025289.6| Homo sapiens chromosome 16 clone RP11-533D19, com... 42 2.3
13gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, compl... 42 2.3
14gb|AC016991.5|AC016991 Homo sapiens BAC clone RP11-17E15 from Y,... 42 2.3
15gb|AC093526.5| Homo sapiens chromosome 16 clone RP11-213K2, comp... 42 2.3
16gb|AC092326.4| Homo sapiens chromosome 16 clone RP11-14N9, compl... 42 2.3
17gb|AC026472.8| Homo sapiens chromosome 16 clone RP11-511J24, com... 42 2.3
18gb|AC138811.3| Homo sapiens chromosome 16 clone RP11-1035H13, co... 42 2.3
19gb|AC010373.7| Homo sapiens chromosome 16 clone CTD-2053O6, comp... 42 2.3
20gb|AC126760.4| Homo sapiens chromosome 16 clone RP11-1307B12, co... 42 2.3
21ref|XM_641577.1| Dictyostelium discoideum FLN (DDB0201554), part... 40 9.2
22gb|AC167699.2| Reniera sp. JGI-2005 clone JGIBAYC-5H5, complete ... 40 9.2
23gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
24ref|XM_663576.1| Cryptosporidium hominis TU502 transmembrane pho... 40 9.2
25emb|AL354674.5| Human DNA sequence from clone RP11-629E24 on chr... 40 9.2
26emb|AL121674.12|HSDJ540H1 Human DNA sequence from clone RP4-540H... 40 9.2
27gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, com... 40 9.2
28emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 i... 40 9.2
29emb|X96770.1|SCLACHXVI S.cerevisiae chromosome XVI, left arm DNA 40 9.2
30emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 ... 40 9.2
31emb|BX470159.8| Zebrafish DNA sequence from clone DKEY-34H12, co... 40 9.2
32gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 9.2
33emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in... 40 9.2
34dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
35gb|AC159029.1| Pan troglodytes BAC clone CH251-407C14 from chrom... 40 9.2
36emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 i... 40 9.2
37emb|Z73523.1|SCYPL167C S.cerevisiae chromosome XVI reading frame... 40 9.2
38gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, com... 40 9.2
39gb|DQ332014.1| Synthetic construct Saccharomyces cerevisiae clon... 40 9.2
40gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.2
41gb|AC158169.2| Mus musculus BAC clone RP23-210A16 from chromosom... 40 9.2
42emb|X15430.1|DDGELF Dictyostelium discoideum mRNA for gelation f... 40 9.2
43gb|M29683.1|YSCREV3 S.cerevisiae DNA polymerase (rev3) gene, com... 40 9.2 
>ref|XM_493842.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 717

 Score =  121 bits (61), Expect = 3e-24
 Identities = 196/241 (81%)
 Strand = Plus / Minus

                                                                       
Query: 206 tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
           |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 713 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 654

                                                                       
Query: 266 gcattggttgcatcagtcctcgagccgaactttaccagcaccattcttacaggctcagga 325
           |||||||  ||||||||||| |||| ||| || |||||||||| ||| | ||| || || 
Sbjct: 653 gcattggcggcatcagtccttgagcggaatttaaccagcaccactctgataggatctggg 594

                                                                       
Query: 326 accccagctctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaa 385
           || |||| ||||| |||| |||||||||| |||||||||   || ||||| |||| ||| 
Sbjct: 593 acaccaggtctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaat 534

                                                                       
Query: 386 cgttctatgtcatcagcttgagcgcttcgagggactccttgcaacagtacagcttttcca 445
           ||||||||||| || | |  |||  ||||||||||||||||||| |||| ||||||||||
Sbjct: 533 cgttctatgtcctctggtacagcatttcgagggactccttgcaatagtatagcttttcca 474

            
Query: 446 t 446
           |
Sbjct: 473 t 473



 Score =  103 bits (52), Expect = 7e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                       
Query: 514 tgtttgcctgagtgctgcctcaaatgattccactgaaggaaacttcaataatgcgcccat 573
           ||||||||||| |||||  | |||| ||  |||||||| |||| |||| || ||||||| 
Sbjct: 405 tgtttgcctgactgctgtgttaaataatggcactgaagaaaacctcaacaacgcgcccac 346

                                                                       
Query: 574 gggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttcacattggtc 633
            |||||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||  ||
Sbjct: 345 tggataatatcccctgttataatcaatcttcacatcgtccagtgacagttcagatttatc 286

                                               
Query: 634 aaggtaatggataatgtcagtcttcagcatgttctt 669
           |||||  |||||||| ||||| || |||||| ||||
Sbjct: 285 aaggtggtggataatatcagttttgagcatgctctt 250
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>dbj|AK104514.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-B01, full
           insert sequence
          Length = 1090

 Score =  121 bits (61), Expect = 3e-24
 Identities = 196/241 (81%)
 Strand = Plus / Minus

                                                                       
Query: 206 tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
           |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 816 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 757

                                                                       
Query: 266 gcattggttgcatcagtcctcgagccgaactttaccagcaccattcttacaggctcagga 325
           |||||||  ||||||||||| |||| ||| || |||||||||| ||| | ||| || || 
Sbjct: 756 gcattggcggcatcagtccttgagcggaatttaaccagcaccactctgataggatctggg 697

                                                                       
Query: 326 accccagctctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaa 385
           || |||| ||||| |||| |||||||||| |||||||||   || ||||| |||| ||| 
Sbjct: 696 acaccaggtctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaat 637

                                                                       
Query: 386 cgttctatgtcatcagcttgagcgcttcgagggactccttgcaacagtacagcttttcca 445
           ||||||||||| || | |  |||  ||||||||||||||||||| |||| ||||||||||
Sbjct: 636 cgttctatgtcctctggtacagcatttcgagggactccttgcaatagtatagcttttcca 577

            
Query: 446 t 446
           |
Sbjct: 576 t 576



 Score =  103 bits (52), Expect = 7e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                       
Query: 514 tgtttgcctgagtgctgcctcaaatgattccactgaaggaaacttcaataatgcgcccat 573
           ||||||||||| |||||  | |||| ||  |||||||| |||| |||| || ||||||| 
Sbjct: 508 tgtttgcctgactgctgtgttaaataatggcactgaagaaaacctcaacaacgcgcccac 449

                                                                       
Query: 574 gggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttcacattggtc 633
            |||||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||  ||
Sbjct: 448 tggataatatcccctgttataatcaatcttcacatcgtccagtgacagttcagatttatc 389

                                               
Query: 634 aaggtaatggataatgtcagtcttcagcatgttctt 669
           |||||  |||||||| ||||| || |||||| ||||
Sbjct: 388 aaggtggtggataatatcagttttgagcatgctctt 353
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>dbj|AK102161.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086G07, full
           insert sequence
          Length = 1124

 Score =  121 bits (61), Expect = 3e-24
 Identities = 196/241 (81%)
 Strand = Plus / Minus

                                                                       
Query: 206 tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
           |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 839 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 780

                                                                       
Query: 266 gcattggttgcatcagtcctcgagccgaactttaccagcaccattcttacaggctcagga 325
           |||||||  ||||||||||| |||| ||| || |||||||||| ||| | ||| || || 
Sbjct: 779 gcattggcggcatcagtccttgagcggaatttaaccagcaccactctgataggatctggg 720

                                                                       
Query: 326 accccagctctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaa 385
           || |||| ||||| |||| |||||||||| |||||||||   || ||||| |||| ||| 
Sbjct: 719 acaccaggtctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaat 660

                                                                       
Query: 386 cgttctatgtcatcagcttgagcgcttcgagggactccttgcaacagtacagcttttcca 445
           ||||||||||| || | |  |||  ||||||||||||||||||| |||| ||||||||||
Sbjct: 659 cgttctatgtcctctggtacagcatttcgagggactccttgcaatagtatagcttttcca 600

            
Query: 446 t 446
           |
Sbjct: 599 t 599



 Score =  103 bits (52), Expect = 7e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                       
Query: 514 tgtttgcctgagtgctgcctcaaatgattccactgaaggaaacttcaataatgcgcccat 573
           ||||||||||| |||||  | |||| ||  |||||||| |||| |||| || ||||||| 
Sbjct: 531 tgtttgcctgactgctgtgttaaataatggcactgaagaaaacctcaacaacgcgcccac 472

                                                                       
Query: 574 gggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttcacattggtc 633
            |||||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||  ||
Sbjct: 471 tggataatatcccctgttataatcaatcttcacatcgtccagtgacagttcagatttatc 412

                                               
Query: 634 aaggtaatggataatgtcagtcttcagcatgttctt 669
           |||||  |||||||| ||||| || |||||| ||||
Sbjct: 411 aaggtggtggataatatcagttttgagcatgctctt 376
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>dbj|AK061166.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-A08, full
           insert sequence
          Length = 1122

 Score =  121 bits (61), Expect = 3e-24
 Identities = 196/241 (81%)
 Strand = Plus / Minus

                                                                       
Query: 206 tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
           |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 838 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 779

                                                                       
Query: 266 gcattggttgcatcagtcctcgagccgaactttaccagcaccattcttacaggctcagga 325
           |||||||  ||||||||||| |||| ||| || |||||||||| ||| | ||| || || 
Sbjct: 778 gcattggcggcatcagtccttgagcggaatttaaccagcaccactctgataggatctggg 719

                                                                       
Query: 326 accccagctctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaa 385
           || |||| ||||| |||| |||||||||| |||||||||   || ||||| |||| ||| 
Sbjct: 718 acaccaggtctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaat 659

                                                                       
Query: 386 cgttctatgtcatcagcttgagcgcttcgagggactccttgcaacagtacagcttttcca 445
           ||||||||||| || | |  |||  ||||||||||||||||||| |||| ||||||||||
Sbjct: 658 cgttctatgtcctctggtacagcatttcgagggactccttgcaatagtatagcttttcca 599

            
Query: 446 t 446
           |
Sbjct: 598 t 598



 Score =  103 bits (52), Expect = 7e-19
 Identities = 130/156 (83%)
 Strand = Plus / Minus

                                                                       
Query: 514 tgtttgcctgagtgctgcctcaaatgattccactgaaggaaacttcaataatgcgcccat 573
           ||||||||||| |||||  | |||| ||  |||||||| |||| |||| || ||||||| 
Sbjct: 530 tgtttgcctgactgctgtgttaaataatggcactgaagaaaacctcaacaacgcgcccac 471

                                                                       
Query: 574 gggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttcacattggtc 633
            |||||| ||||| |||| ||||||||||||||||| ||||||||||||||| |||  ||
Sbjct: 470 tggataatatcccctgttataatcaatcttcacatcgtccagtgacagttcagatttatc 411

                                               
Query: 634 aaggtaatggataatgtcagtcttcagcatgttctt 669
           |||||  |||||||| ||||| || |||||| ||||
Sbjct: 410 aaggtggtggataatatcagttttgagcatgctctt 375
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                           
Query: 566     gcgcccatgggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttca 625
               |||||||  |||||| ||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 9676592 gcgcccactggataatatcccctgttataatcaatcttcacatcgtccagtgacagttca 9676533

                                                           
Query: 626     cattggtcaaggtaatggataatgtcagtcttcagcatgttctt 669
                |||  |||||||  |||||||| ||||| || |||||| ||||
Sbjct: 9676532 gatttatcaaggtggtggataatatcagttttgagcatgctctt 9676489



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                           
Query: 206     tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
               |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 9678878 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 9678819

                                                          
Query: 266     gcattggttgcatcagtcctcgagccgaactttaccagcacca 308
               |||||||  ||||||||||| |||| ||| || ||||||||||
Sbjct: 9678818 gcattggcggcatcagtccttgagcggaatttaaccagcacca 9678776



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                           
Query: 335     ctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaacgttctatg 394
               |||| |||| |||||||||| |||||||||   || ||||| |||| ||| |||||||||
Sbjct: 9678545 ctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaatcgttctatg 9678486

                                                       
Query: 395     tcatcagcttgagcgcttcgagggactccttgcaacagta 434
               || || | |  |||  ||||||||||||||||||| ||||
Sbjct: 9678485 tcctctggtacagcatttcgagggactccttgcaatagta 9678446
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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
             sequence
          Length = 165113

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                         
Query: 566   gcgcccatgggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttca 625
             |||||||  |||||| ||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 97491 gcgcccactggataatatcccctgttataatcaatcttcacatcgtccagtgacagttca 97432

                                                         
Query: 626   cattggtcaaggtaatggataatgtcagtcttcagcatgttctt 669
              |||  |||||||  |||||||| ||||| || |||||| ||||
Sbjct: 97431 gatttatcaaggtggtggataatatcagttttgagcatgctctt 97388



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                         
Query: 206   tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
             |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 99777 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 99718

                                                        
Query: 266   gcattggttgcatcagtcctcgagccgaactttaccagcacca 308
             |||||||  ||||||||||| |||| ||| || ||||||||||
Sbjct: 99717 gcattggcggcatcagtccttgagcggaatttaaccagcacca 99675



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                         
Query: 335   ctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaacgttctatg 394
             |||| |||| |||||||||| |||||||||   || ||||| |||| ||| |||||||||
Sbjct: 99444 ctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaatcgttctatg 99385

                                                     
Query: 395   tcatcagcttgagcgcttcgagggactccttgcaacagta 434
             || || | |  |||  ||||||||||||||||||| ||||
Sbjct: 99384 tcctctggtacagcatttcgagggactccttgcaatagta 99345
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 89/104 (85%)
 Strand = Plus / Minus

                                                                           
Query: 566     gcgcccatgggataaaatcccttgttgtaatcaatcttcacatcatccagtgacagttca 625
               |||||||  |||||| ||||| |||| ||||||||||||||||| |||||||||||||||
Sbjct: 9674713 gcgcccactggataatatcccctgttataatcaatcttcacatcgtccagtgacagttca 9674654

                                                           
Query: 626     cattggtcaaggtaatggataatgtcagtcttcagcatgttctt 669
                |||  |||||||  |||||||| ||||| || |||||| ||||
Sbjct: 9674653 gatttatcaaggtggtggataatatcagttttgagcatgctctt 9674610



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 85/103 (82%)
 Strand = Plus / Minus

                                                                           
Query: 206     tgaataacccgcatggtaacaggactgttcagacagaaacccttgtttttagcaatgaag 265
               |||| ||| |||||| | |||||  ||||||| |||||||||  ||| |||| |||||| 
Sbjct: 9676999 tgaagaacacgcatgctcacagggttgttcaggcagaaaccccggttcttagtaatgaaa 9676940

                                                          
Query: 266     gcattggttgcatcagtcctcgagccgaactttaccagcacca 308
               |||||||  ||||||||||| |||| ||| || ||||||||||
Sbjct: 9676939 gcattggcggcatcagtccttgagcggaatttaaccagcacca 9676897



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 82/100 (82%)
 Strand = Plus / Minus

                                                                           
Query: 335     ctgacaaagttttcaaatggaggaggttcatagttagtgccgcacaagaaacgttctatg 394
               |||| |||| |||||||||| |||||||||   || ||||| |||| ||| |||||||||
Sbjct: 9676666 ctgagaaagctttcaaatggcggaggttcaacattggtgccacacaggaatcgttctatg 9676607

                                                       
Query: 395     tcatcagcttgagcgcttcgagggactccttgcaacagta 434
               || || | |  |||  ||||||||||||||||||| ||||
Sbjct: 9676606 tcctctggtacagcatttcgagggactccttgcaatagta 9676567
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>gb|AY109783.1| Zea mays CL19997_1 mRNA sequence
          Length = 1041

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 77/88 (87%)
 Strand = Plus / Plus

                                                                       
Query: 582 atcccttgttgtaatcaatcttcacatcatccagtgacagttcacattggtcaaggtaat 641
           ||||||||||||| ||||||||||||||||||| ||||| | |||||  |||||||| ||
Sbjct: 665 atcccttgttgtattcaatcttcacatcatccaatgacaatccacatctgtcaaggtgat 724

                                       
Query: 642 ggataatgtcagtcttcagcatgttctt 669
           ||||||| ||||| ||||  ||||||||
Sbjct: 725 ggataatatcagttttcaatatgttctt 752



 Score = 40.1 bits (20), Expect = 9.2
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 202 ttactgaataacccgcatggtaacaggactgttcagacagaaac 245
           ||||||||  || |||||| ||||  ||||||||||||||||||
Sbjct: 285 ttactgaaggacacgcatgctaacttgactgttcagacagaaac 328
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>gb|AC121608.3| Mus musculus BAC clone RP23-317M3 from chromosome 9, complete sequence
          Length = 207820

 Score = 44.1 bits (22), Expect = 0.59
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 26     aacctgcaagctaagcacaagc 47
              ||||||||||||||||||||||
Sbjct: 182713 aacctgcaagctaagcacaagc 182734
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>gb|AC126917.1| Homo sapiens chromosome 5 clone RP11-467F22, complete sequence
          Length = 206737

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 190   atatctgacaaattactgaat 210
             |||||||||||||||||||||
Sbjct: 68943 atatctgacaaattactgaat 68963
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>gb|AC109483.3| Homo sapiens chromosome 5 clone RP11-500H9, complete sequence
          Length = 70474

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   cagacagaaacccttgttttt 255
             |||||||||||||||||||||
Sbjct: 13363 cagacagaaacccttgttttt 13343
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>gb|AC025289.6| Homo sapiens chromosome 16 clone RP11-533D19, complete sequence
          Length = 185047

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 24704 atctgacaaattactgaataa 24724
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>gb|AC091893.3| Homo sapiens chromosome 5 clone RP11-12P19, complete sequence
          Length = 154364

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    cagacagaaacccttgttttt 255
              |||||||||||||||||||||
Sbjct: 134335 cagacagaaacccttgttttt 134315
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>gb|AC016991.5|AC016991 Homo sapiens BAC clone RP11-17E15 from Y, complete sequence
          Length = 174402

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 509  tgaattgtttgcctgagtgctgcct 533
            |||||| ||||||||||||||||||
Sbjct: 7539 tgaattctttgcctgagtgctgcct 7563
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>gb|AC093526.5| Homo sapiens chromosome 16 clone RP11-213K2, complete sequence
          Length = 178734

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 15685 atctgacaaattactgaataa 15665
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>gb|AC092326.4| Homo sapiens chromosome 16 clone RP11-14N9, complete sequence
          Length = 133615

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 95864 atctgacaaattactgaataa 95884
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>gb|AC026472.8| Homo sapiens chromosome 16 clone RP11-511J24, complete sequence
          Length = 185047

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 24704 atctgacaaattactgaataa 24724
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>gb|AC138811.3| Homo sapiens chromosome 16 clone RP11-1035H13, complete sequence
          Length = 194779

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 68206 atctgacaaattactgaataa 68226
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>gb|AC010373.7| Homo sapiens chromosome 16 clone CTD-2053O6, complete sequence
          Length = 171860

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 97968 atctgacaaattactgaataa 97988
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>gb|AC126760.4| Homo sapiens chromosome 16 clone RP11-1307B12, complete sequence
          Length = 211419

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   atctgacaaattactgaataa 212
             |||||||||||||||||||||
Sbjct: 45131 atctgacaaattactgaataa 45151
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>ref|XM_641577.1| Dictyostelium discoideum FLN (DDB0201554), partial mRNA
          Length = 2574

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 58  ggttgacaacaaaaatggta 77
           ||||||||||||||||||||
Sbjct: 918 ggttgacaacaaaaatggta 937
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>gb|AC167699.2| Reniera sp. JGI-2005 clone JGIBAYC-5H5, complete sequence
          Length = 35081

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 340  aaagttttcaaatggaggag 359
            ||||||||||||||||||||
Sbjct: 8731 aaagttttcaaatggaggag 8750
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>gb|AC137744.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0074L11, complete sequence
          Length = 180703

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    taacaggaaacctgcaagct 37
             ||||||||||||||||||||
Sbjct: 65141 taacaggaaacctgcaagct 65160
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>ref|XM_663576.1| Cryptosporidium hominis TU502 transmembrane phosphatase with tensin y
            isoform C (Chro.30223) partial mRNA
          Length = 2244

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 434  acagcttttccattcaaagatatc 457
            |||| |||||||||||||||||||
Sbjct: 1362 acagattttccattcaaagatatc 1339
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>emb|AL354674.5| Human DNA sequence from clone RP11-629E24 on chromosome 13 Contains  a
             novel gene and a CpG island, complete sequence
          Length = 137347

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   tttgcctgagtgctgcctcaaatg 539
             |||||||||||||| |||||||||
Sbjct: 30138 tttgcctgagtgcttcctcaaatg 30161
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>emb|AL121674.12|HSDJ540H1 Human DNA sequence from clone RP4-540H1 on chromosome 20 Contains
            part of the CHD6 gene for chromodomain helicase DNA
            binding protein 6, complete sequence
          Length = 39079

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 643  gataatgtcagtcttcagcatgtt 666
            ||||||||||||||| ||||||||
Sbjct: 1758 gataatgtcagtctttagcatgtt 1781
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>gb|AC158963.3| Mus musculus chromosome 1, clone RP23-321A12, complete sequence
          Length = 203604

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aagctaagcacaagcacaag 52
             ||||||||||||||||||||
Sbjct: 97601 aagctaagcacaagcacaag 97582
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>emb|BX321904.19| Zebrafish DNA sequence from clone DKEY-279K15 in linkage group 1,
             complete sequence
          Length = 153891

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 532   ctcaaatgattccactgaaggaaa 555
             ||||||||||||| ||||||||||
Sbjct: 22062 ctcaaatgattcccctgaaggaaa 22039
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>emb|X96770.1|SCLACHXVI S.cerevisiae chromosome XVI, left arm DNA
          Length = 55786

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   caaaaatggtacaataaagt 86
            ||||||||||||||||||||
Sbjct: 8430 caaaaatggtacaataaagt 8411
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>emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 in linkage group 13,
              complete sequence
          Length = 183756

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    tctgacaaagttttcaaatg 353
              ||||||||||||||||||||
Sbjct: 174460 tctgacaaagttttcaaatg 174479
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>emb|BX470159.8| Zebrafish DNA sequence from clone DKEY-34H12, complete sequence
          Length = 210284

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 61    tgacaacaaaaatggtacaa 80
             ||||||||||||||||||||
Sbjct: 55079 tgacaacaaaaatggtacaa 55098
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 276     catcagtcctcgagccgaac 295
               ||||||||||||||||||||
Sbjct: 2519533 catcagtcctcgagccgaac 2519552
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>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14,
              complete sequence
          Length = 262038

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     tgacaacaaaaatggtacaa 80
              ||||||||||||||||||||
Sbjct: 254406 tgacaacaaaaatggtacaa 254387
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 18       taacaggaaacctgcaagct 37
                ||||||||||||||||||||
Sbjct: 21713088 taacaggaaacctgcaagct 21713107
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>gb|AC159029.1| Pan troglodytes BAC clone CH251-407C14 from chromosome unknown,
             complete sequence
          Length = 175795

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 516   tttgcctgagtgctgcctcaaatg 539
             |||||||||||||| |||||||||
Sbjct: 45267 tttgcctgagtgcttcctcaaatg 45290
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>emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 in linkage group 4,
             complete sequence
          Length = 157594

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 601   cttcacatcatccagtgaca 620
             ||||||||||||||||||||
Sbjct: 20494 cttcacatcatccagtgaca 20475
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>emb|Z73523.1|SCYPL167C S.cerevisiae chromosome XVI reading frame ORF YPL167c
          Length = 4828

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   caaaaatggtacaataaagt 86
            ||||||||||||||||||||
Sbjct: 2750 caaaaatggtacaataaagt 2731
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>gb|AC131084.13| Mus musculus chromosome 1, clone RP23-450D2, complete sequence
          Length = 208140

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aagctaagcacaagcacaag 52
              ||||||||||||||||||||
Sbjct: 138403 aagctaagcacaagcacaag 138384
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>gb|DQ332014.1| Synthetic construct Saccharomyces cerevisiae clone FLH202996.01X REV3
            gene, complete sequence
          Length = 4515

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   caaaaatggtacaataaagt 86
            ||||||||||||||||||||
Sbjct: 1849 caaaaatggtacaataaagt 1868
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 18       taacaggaaacctgcaagct 37
                ||||||||||||||||||||
Sbjct: 22023287 taacaggaaacctgcaagct 22023306
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>gb|AC158169.2| Mus musculus BAC clone RP23-210A16 from chromosome 5, complete sequence
          Length = 223006

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 511   aattgtttgcctgagtgctg 530
             ||||||||||||||||||||
Sbjct: 71195 aattgtttgcctgagtgctg 71176
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>emb|X15430.1|DDGELF Dictyostelium discoideum mRNA for gelation factor
          Length = 2733

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 58   ggttgacaacaaaaatggta 77
            ||||||||||||||||||||
Sbjct: 1010 ggttgacaacaaaaatggta 1029
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>gb|M29683.1|YSCREV3 S.cerevisiae DNA polymerase (rev3) gene, complete cds
          Length = 5056

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 67   caaaaatggtacaataaagt 86
            ||||||||||||||||||||
Sbjct: 2153 caaaaatggtacaataaagt 2172


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,244,329
Number of Sequences: 3902068
Number of extensions: 6244329
Number of successful extensions: 113951
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 113693
Number of HSP's gapped (non-prelim): 251
length of query: 673
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 650
effective length of database: 17,143,297,704
effective search space: 11143143507600
effective search space used: 11143143507600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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