>dbj|AB164396.1| Hordeum vulgare HvMS mRNA for methionine synthase, complete cds
          Length = 2558

 Score =  398 bits (201), Expect = e-108
 Identities = 270/295 (91%), Gaps = 3/295 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    atacacactgacaacacgcctgaaaaagccacctgaataaagggatgagcacatgctgcc 60
            ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |||||
Sbjct: 2495 atacacactgacaac-cgcctcaaaaagccacc-gaatcaagggatgagcacatcctgcc 2438

                                                                        
Query: 61   gngaaacaactaccctaataaccaacaggtggacacgaggtccanattattcaaagtaaa 120
            | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 2437 gagaaacaactaccctaataaccaacaagtggacacgaggtccagattattcaaagtaaa 2378

                                                                        
Query: 121  acgccggccatggcaacggngacatcctccttgcaattaaaannnnnnnagagctgntat 180
            ||||||||||||||||||| ||||||||||||||||||||||       ||||||| |||
Sbjct: 2377 acgccggccatggcaacggtgacatcctccttgcaattaaaagggggggagagctgctat 2318

                                                                        
Query: 181  acnagcactgcttactgcgccttggcnagctcggcgcggatctgnttggcggcctcagac 240
            || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct: 2317 acgagcactgcttactgcgccttggcgagctcggcgcggatctgcttggcggcctc-gac 2259

                                                                   
Query: 241  catgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||
Sbjct: 2258 catgttggtgagggcgggcttgacctcggcgtacttgcgggtcttgagaccgcag 2204

>emb|AM039904.1| Hordeum vulgare mRNA for methionine synthase 1 enzyme (ms1 gene)
          Length = 2642

 Score =  391 bits (197), Expect = e-106
 Identities = 269/295 (91%), Gaps = 3/295 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    atacacactgacaacacgcctgaaaaagccacctgaataaagggatgagcacatgctgcc 60
            ||||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| |||||
Sbjct: 2540 atacacactgacaac-cgcctcaaaaagccacc-gaatcaagggatgagcacatcctgcc 2483

                                                                        
Query: 61   gngaaacaactaccctaataaccaacaggtggacacgaggtccanattattcaaagtaaa 120
            | ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 2482 gagaaacaactaccctaataaccaacaagtggacacgaggtccagattattcaaagtaaa 2423

                                                                        
Query: 121  acgccggccatggcaacggngacatcctccttgcaattaaaannnnnnnagagctgntat 180
            ||||||||||||||||||| ||||||||||||||||||||||       ||||||| |||
Sbjct: 2422 acgccggccatggcaacggtgacatcctccttgcaattaaaagggggggagagctgctat 2363

                                                                        
Query: 181  acnagcactgcttactgcgccttggcnagctcggcgcggatctgnttggcggcctcagac 240
            || ||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||
Sbjct: 2362 acgagcactgcttactgcgccttggcgagctcggcgcggatttgcttggcggcctc-gac 2304

                                                                   
Query: 241  catgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||||||||||||||||||  |||||||||| ||| ||||||||||||
Sbjct: 2303 catgttggtgagggcgggcttgacctcggcgtacttgcgggtcttgagaccgcag 2249

>gb|AF439723.1|AF439723 Zea mays methionine synthase mRNA, partial cds
          Length = 2300

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 52/59 (88%)
 Strand = Plus / Minus

                                                                       
Query: 237  agaccatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||||| ||||||||||||||||  | |||||||| ||| ||||| ||||||
Sbjct: 2257 agaccatgttggtcagggcgggcttgacctccgtgtacttgcgggtcttgaggccgcag 2199

>gb|AY109415.1| Zea mays CL598_2 mRNA sequence
          Length = 3017

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                      
Query: 237 agaccatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
           ||||||||||||| ||||||||||||||||  | |||||||| ||| ||||| ||||||
Sbjct: 674 agaccatgttggtcagggcgggcttgacctccgtgtacttgcgggtcttgaggccgcag 732

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 239      accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
                ||||||||||||||||| ||||| ||||  | |||||||| ||| ||||||||||||
Sbjct: 26696135 accatgttggtgagggcaggcttcacctcggtgtacttgcgggtcttgagaccgcag 26696079



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 239      accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
                ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 26684285 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 26684229

>dbj|AK099069.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163D13, full
            insert sequence
          Length = 2640

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 2322 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 2266

>dbj|AK067958.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128E22, full
            insert sequence
          Length = 2058

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 1689 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 1633

>dbj|AK067757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H17, full
            insert sequence
          Length = 2627

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||||||||| ||||| ||||  | |||||||| ||| ||||||||||||
Sbjct: 2322 accatgttggtgagggcaggcttcacctctgtgtacttgcgggtcttgagaccgcag 2266

>dbj|AK067726.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O11, full
            insert sequence
          Length = 2783

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||||||||| ||||| ||||  | |||||||| ||| ||||||||||||
Sbjct: 2441 accatgttggtgagggcaggcttcacctcggtgtacttgcgggtcttgagaccgcag 2385

>dbj|AK065255.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002J12, full
            insert sequence
          Length = 2668

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 2321 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 2265

>dbj|AK062198.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-G02, full
           insert sequence
          Length = 1064

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                    
Query: 239 accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
           ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 746 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 690

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 239      accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
                ||||||||||||||||| ||||| ||||  | |||||||| ||| ||||||||||||
Sbjct: 26624304 accatgttggtgagggcaggcttcacctcggtgtacttgcgggtcttgagaccgcag 26624248



 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                         
Query: 239      accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
                ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 26612454 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 26612398

>emb|AL731889.5|CNS08C8T Oryza sativa chromosome 12, . BAC OJ1122_G07 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 83015

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                      
Query: 239   accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
             ||||||||||||||||| ||||| ||||  | |||||||| ||| ||||||||||||
Sbjct: 74992 accatgttggtgagggcaggcttcacctcggtgtacttgcgggtcttgagaccgcag 75048

>emb|BX072547.2|CNS09S4Q Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0090N22
            of library OSJNBb from chromosome 12 of cultivar
            Nipponbare of ssp. japonica of Oryza sativa (rice),
            complete sequence
          Length = 8623

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||| ||||||||||||||||    |||||||| ||| ||||||||||||
Sbjct: 2869 accatgttggtaagggcgggcttgacctcgttgtacttgcgggtcttgagaccgcag 2813

>emb|BX000561.2|CNS08CE7 Oryza sativa chromosome 12, . BAC OJ1014_F06 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 104849

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 239    accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
              ||||||||||||||||| ||||| ||||  | |||||||| ||| ||||||||||||
Sbjct: 102843 accatgttggtgagggcaggcttcacctcggtgtacttgcgggtcttgagaccgcag 102899

>gb|AY104793.1| Zea mays PCO079166 mRNA sequence
          Length = 2720

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                   
Query: 237  agaccatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagacc 291
            ||||||||||||| ||||||||||||||||  | ||||||||  || ||||||||
Sbjct: 2366 agaccatgttggtcagggcgggcttgacctccgtgtacttgcgtgtcttgagacc 2312

>gb|BT009353.1| Triticum aestivum clone wlm96.pk0018.c10:fis, full insert mRNA
            sequence
          Length = 2634

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 239  accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||| ||||||||||| ||||  | |||||||| ||| ||||| ||||||
Sbjct: 2329 accatgttggtcagggcgggcttcacctccgtgtacttgcgggtcttgaggccgcag 2273

>gb|AF466201.1| Sorghum bicolor clone SBTXS_0032H17 putative cytochrome P450-like
             protein, putative DNA-binding protein homolog,
             TATA-binding protein, hypothetical protein M3E9.200,
             3-glucanase, K-exchanger-like protein, small heat
             shock-like protein, methionine synthase protein, putative
             far-red impaired response protein, and putative vegetative
             storage protein genes, complete cds
          Length = 100773

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 46/53 (86%)
 Strand = Plus / Plus

                                                                  
Query: 239   accatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagacc 291
             ||||||||||| ||||||||||||||||  | ||||||||  || ||||||||
Sbjct: 72721 accatgttggtcagggcgggcttgacctccgtgtacttgcgtgtcttgagacc 72773

>gb|BT016781.1| Zea mays clone Contig614 mRNA sequence
          Length = 1759

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                       
Query: 237  agaccatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||||||| ||||| ||||| ||||  | ||||||||  || ||||||||||||
Sbjct: 1360 agaccatgttggtcagggcaggcttcacctccgtgtacttgcgtgtcttgagaccgcag 1302

>gb|AY111481.1| Zea mays CL598_4 mRNA sequence
          Length = 664

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 237 agaccatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
           ||||||||||||| ||||| ||||| ||||  | ||||||||  || ||||||||||||
Sbjct: 333 agaccatgttggtcagggcaggcttcacctccgtgtacttgcgtgtcttgagaccgcag 391

>emb|AM039905.1| Hordeum vulgare mRNA for methionine synthase 2 enzyme (ms2 gene)
          Length = 2675

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/58 (84%)
 Strand = Plus / Minus

                                                                      
Query: 238  gaccatgttggtgagggcgggcttgacctnngcgtacttgcnggtnttgagaccgcag 295
            ||||||||| || ||||||||||| ||||  | |||||||| ||| ||||| ||||||
Sbjct: 2339 gaccatgttagtcagggcgggcttcacctcggtgtacttgcgggtcttgaggccgcag 2282


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,376,619
Number of Sequences: 3902068
Number of extensions: 1376619
Number of successful extensions: 20160
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 20130
Number of HSP's gapped (non-prelim): 24
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)