ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39g01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT017440.1| Zea mays clone EL01N0404H05.c mRNA sequence 157 3e-35
2ref|NM_196466.1| Oryza sativa (japonica cultivar-group) contains... 149 8e-33
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 149 8e-33
4gb|AC027659.1| Oryza sativa (japonica cultivar-group) BAC nbxb00... 149 8e-33
5dbj|AK059434.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 8e-33
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 149 8e-33
7ref|XM_468565.1| Oryza sativa (japonica cultivar-group), predic... 133 5e-28
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 133 5e-28
9dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
10gb|AY109334.1| Zea mays CL3259_2 mRNA sequence 133 5e-28
11gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
12gb|BT018883.1| Zea mays clone EL01T0205A07.d mRNA sequence 125 1e-25
13ref|XM_809649.1| Trypanosoma cruzi strain CL Brener 40S ribosoma... 48 0.021
14ref|XM_809656.1| Trypanosoma cruzi strain CL Brener 40S ribosoma... 48 0.021
15ref|NM_001036758.1| Arabidopsis thaliana structural constituent ... 44 0.32
16ref|NM_120562.2| Arabidopsis thaliana structural constituent of ... 44 0.32
17ref|NM_001036757.1| Arabidopsis thaliana structural constituent ... 44 0.32
18ref|NM_180434.1| Arabidopsis thaliana structural constituent of ... 44 0.32
19gb|AC121814.3| Mus musculus BAC clone RP23-457H19 from chromosom... 44 0.32
20gb|BT000851.1| Arabidopsis thaliana At5g04800/MUK11_12 mRNA, com... 44 0.32
21emb|AL162972.1|ATT1E3 Arabidopsis thaliana DNA chromosome 5, BAC... 44 0.32
22gb|AF361843.1| Arabidopsis thaliana AT5g04800/MUK11_12 mRNA, com... 44 0.32
23emb|BX829605.1|CNS0A03W Arabidopsis thaliana Full-length cDNA Co... 44 0.32
24gb|AY087862.1| Arabidopsis thaliana clone 39018 mRNA, complete s... 44 0.32
25dbj|AB008271.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.32
26gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 42 1.3
27ref|XM_812742.1| Trypanosoma cruzi strain CL Brener ribosomal pr... 42 1.3
28ref|XM_814621.1| Trypanosoma cruzi strain CL Brener ribosomal pr... 42 1.3
29gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the... 42 1.3
30gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 5.0
31gb|AC092458.5| Homo sapiens BAC clone RP13-612N21 from 4, comple... 40 5.0 
>gb|BT017440.1| Zea mays clone EL01N0404H05.c mRNA sequence
          Length = 511

 Score =  157 bits (79), Expect = 3e-35
 Identities = 121/135 (89%)
 Strand = Plus / Plus

                                                                       
Query: 244 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
           |||||| ||||| ||||||||||||||||||||   ||||||||| ||||| ||||||||
Sbjct: 287 gcgctctacgcccgggagatcggccatgccgagtgccgccagcatctccatggtctcctt 346

                                                                       
Query: 304 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
           ||||||||||||||| |||||||| || || |||||||| ||||||||||||||||||||
Sbjct: 347 gtcgacgcggatctcttcgacctcgagcgctgacttctccgggacgaagtccatgcggcg 406

                          
Query: 364 ttcgcgctcctcctc 378
            || |||||||||||
Sbjct: 407 ctcccgctcctcctc 421
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>ref|NM_196466.1| Oryza sativa (japonica cultivar-group) contains similarity to 40S
           ribosomal protein S17 (OSJNBa0015J03.22), mRNA
          Length = 426

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                       
Query: 244 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
           |||||||||||| ||||| ||||||||||||||    || ||||| ||||| ||||||||
Sbjct: 357 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 298

                                                                       
Query: 304 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
           ||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 297 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 238

                          
Query: 364 ttcgcgctcctcctc 378
            ||||||||||||||
Sbjct: 237 ctcgcgctcctcctc 223
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                            
Query: 244      gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
                |||||||||||| ||||| ||||||||||||||    || ||||| ||||| ||||||||
Sbjct: 13815834 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 13815775

                                                                            
Query: 304      gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
                ||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 13815774 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 13815715

                               
Query: 364      ttcgcgctcctcctc 378
                 ||||||||||||||
Sbjct: 13815714 ctcgcgctcctcctc 13815700
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>gb|AC027659.1| Oryza sativa (japonica cultivar-group) BAC nbxb0015J03 chromosome 10,
              complete sequence
          Length = 172742

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                          
Query: 244    gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
              |||||||||||| ||||| ||||||||||||||    || ||||| ||||| ||||||||
Sbjct: 142363 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 142304

                                                                          
Query: 304    gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
              ||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 142303 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 142244

                             
Query: 364    ttcgcgctcctcctc 378
               ||||||||||||||
Sbjct: 142243 ctcgcgctcctcctc 142229
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>dbj|AK059434.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-F09, full
           insert sequence
          Length = 736

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                       
Query: 244 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
           |||||||||||| ||||| ||||||||||||||    || ||||| ||||| ||||||||
Sbjct: 454 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 395

                                                                       
Query: 304 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
           ||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 394 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 335

                          
Query: 364 ttcgcgctcctcctc 378
            ||||||||||||||
Sbjct: 334 ctcgcgctcctcctc 320
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  149 bits (75), Expect = 8e-33
 Identities = 120/135 (88%)
 Strand = Plus / Minus

                                                                            
Query: 244      gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
                |||||||||||| ||||| ||||||||||||||    || ||||| ||||| ||||||||
Sbjct: 13823176 gcgctcgacgccggggaggtcggccatgccgagcgcggcgagcatctccatggtctcctt 13823117

                                                                            
Query: 304      gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
                ||||||||||||||| || ||||| || ||||||||||| ||||||||||||||||||||
Sbjct: 13823116 gtcgacgcggatctcctccacctcgagcgccgacttctccgggacgaagtccatgcggcg 13823057

                               
Query: 364      ttcgcgctcctcctc 378
                 ||||||||||||||
Sbjct: 13823056 ctcgcgctcctcctc 13823042
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>ref|XM_468565.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 435

 Score =  133 bits (67), Expect = 5e-28
 Identities = 118/135 (87%)
 Strand = Plus / Minus

                                                                       
Query: 244 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
           |||| ||||||| ||||| ||||||||||||||| | |  |||||||| |  ||||||||
Sbjct: 357 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 298

                                                                       
Query: 304 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
           |||||||||||| ||||||||||| || |||||| | || ||||||||||||||||||||
Sbjct: 297 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 238

                          
Query: 364 ttcgcgctcctcctc 378
            ||||||||||||||
Sbjct: 237 ctcgcgctcctcctc 223
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  133 bits (67), Expect = 5e-28
 Identities = 118/135 (87%)
 Strand = Plus / Plus

                                                                          
Query: 244    gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
              |||| ||||||| ||||| ||||||||||||||| | |  |||||||| |  ||||||||
Sbjct: 537809 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 537868

                                                                          
Query: 304    gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
              |||||||||||| ||||||||||| || |||||| | || ||||||||||||||||||||
Sbjct: 537869 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 537928

                             
Query: 364    ttcgcgctcctcctc 378
               ||||||||||||||
Sbjct: 537929 ctcgcgctcctcctc 537943
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              complete sequence
          Length = 36192742

 Score =  133 bits (67), Expect = 5e-28
 Identities = 118/135 (87%)
 Strand = Plus / Plus

                                                                          
Query: 244    gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
              |||| ||||||| ||||| ||||||||||||||| | |  |||||||| |  ||||||||
Sbjct: 537807 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 537866

                                                                          
Query: 304    gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
              |||||||||||| ||||||||||| || |||||| | || ||||||||||||||||||||
Sbjct: 537867 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 537926

                             
Query: 364    ttcgcgctcctcctc 378
               ||||||||||||||
Sbjct: 537927 ctcgcgctcctcctc 537941
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>gb|AY109334.1| Zea mays CL3259_2 mRNA sequence
          Length = 1585

 Score =  133 bits (67), Expect = 5e-28
 Identities = 118/135 (87%)
 Strand = Plus / Plus

                                                                       
Query: 244 gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
           |||||| ||||| || || |||||||||||||||   || ||||| ||||| ||||||||
Sbjct: 305 gcgctcaacgccgggcaggtcggccatgccgagggcagcgagcatctccatggtctcctt 364

                                                                       
Query: 304 gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
           ||||||||||||||| |||||||| || || |||||||| || |||||||||||||||||
Sbjct: 365 gtcgacgcggatctcttcgacctcgagcgcggacttctccggcacgaagtccatgcggcg 424

                          
Query: 364 ttcgcgctcctcctc 378
            ||||||||||||||
Sbjct: 425 ctcgcgctcctcctc 439
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>gb|AC105733.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0043C10, complete sequence
          Length = 108688

 Score =  133 bits (67), Expect = 5e-28
 Identities = 118/135 (87%)
 Strand = Plus / Minus

                                                                         
Query: 244   gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
             |||| ||||||| ||||| ||||||||||||||| | |  |||||||| |  ||||||||
Sbjct: 78109 gcgcacgacgccggggaggtcggccatgccgagggaggtgagcatgtcgagggtctcctt 78050

                                                                         
Query: 304   gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
             |||||||||||| ||||||||||| || |||||| | || ||||||||||||||||||||
Sbjct: 78049 gtcgacgcggatgtcgtcgacctcgagcgccgacctgtccgggacgaagtccatgcggcg 77990

                            
Query: 364   ttcgcgctcctcctc 378
              ||||||||||||||
Sbjct: 77989 ctcgcgctcctcctc 77975
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>gb|BT018883.1| Zea mays clone EL01T0205A07.d mRNA sequence
          Length = 1280

 Score =  125 bits (63), Expect = 1e-25
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                        
Query: 244  gcgctcgacgccagggagatcggccatgccgaggaacgccagcatgtccatcgtctcctt 303
            |||||| ||||| || || |||||||||||||||   || ||||| ||||| ||||||||
Sbjct: 1014 gcgctcaacgccgggcaggtcggccatgccgagggcagcgagcatctccatggtctcctt 955

                                                                        
Query: 304  gtcgacgcggatctcgtcgacctcaagagccgacttctcagggacgaagtccatgcggcg 363
            ||||||||||||||| |||||||| || || |||||||| || ||||||||| |||||||
Sbjct: 954  gtcgacgcggatctcttcgacctcgagcgcggacttctccggcacgaagtccctgcggcg 895

                           
Query: 364  ttcgcgctcctcctc 378
             ||||||||||||||
Sbjct: 894  ctcgcgctcctcctc 880
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>ref|XM_809649.1| Trypanosoma cruzi strain CL Brener 40S ribosomal protein S17
           (Tc00.1047053508827.70) partial mRNA
          Length = 591

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 351 agtccatgcggcgttcgcgctcctcctc 378
           ||||||||||||| ||||||||||||||
Sbjct: 415 agtccatgcggcgctcgcgctcctcctc 388
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>ref|XM_809656.1| Trypanosoma cruzi strain CL Brener 40S ribosomal protein S17
           (Tc00.1047053508827.79) partial mRNA
          Length = 426

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 351 agtccatgcggcgttcgcgctcctcctc 378
           ||||||||||||| ||||||||||||||
Sbjct: 250 agtccatgcggcgctcgcgctcctcctc 223
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>ref|NM_001036758.1| Arabidopsis thaliana structural constituent of ribosome AT5G04800
           transcript variant AT5G04800.4 mRNA, complete cds
          Length = 822

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 424 aagtccatgcggcgttcacgctcctc 399
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>ref|NM_120562.2| Arabidopsis thaliana structural constituent of ribosome AT5G04800
           transcript variant AT5G04800.1 mRNA, complete cds
          Length = 745

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 364 aagtccatgcggcgttcacgctcctc 339
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>ref|NM_001036757.1| Arabidopsis thaliana structural constituent of ribosome AT5G04800
           transcript variant AT5G04800.3 mRNA, complete cds
          Length = 768

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 370 aagtccatgcggcgttcacgctcctc 345
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>ref|NM_180434.1| Arabidopsis thaliana structural constituent of ribosome AT5G04800
           transcript variant AT5G04800.2 mRNA, complete cds
          Length = 751

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 370 aagtccatgcggcgttcacgctcctc 345
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>gb|AC121814.3| Mus musculus BAC clone RP23-457H19 from chromosome 15, complete
             sequence
          Length = 188928

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 117   taataaaaacttataaagcatgatag 142
             ||||||||||||| ||||||||||||
Sbjct: 89485 taataaaaacttaaaaagcatgatag 89460
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>gb|BT000851.1| Arabidopsis thaliana At5g04800/MUK11_12 mRNA, complete cds
          Length = 426

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 251 aagtccatgcggcgttcacgctcctc 226
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>emb|AL162972.1|ATT1E3 Arabidopsis thaliana DNA chromosome 5, BAC clone T1E3 (ESSA project)
          Length = 83485

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 350   aagtccatgcggcgttcgcgctcctc 375
             ||||||||||||||||| ||||||||
Sbjct: 79380 aagtccatgcggcgttcacgctcctc 79355
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>gb|AF361843.1| Arabidopsis thaliana AT5g04800/MUK11_12 mRNA, complete cds
          Length = 723

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 369 aagtccatgcggcgttcacgctcctc 344
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>emb|BX829605.1|CNS0A03W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB24ZC11 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1247

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 944 aagtccatgcggcgttcacgctcctc 919
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>gb|AY087862.1| Arabidopsis thaliana clone 39018 mRNA, complete sequence
          Length = 718

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 350 aagtccatgcggcgttcgcgctcctc 375
           ||||||||||||||||| ||||||||
Sbjct: 364 aagtccatgcggcgttcacgctcctc 339
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>dbj|AB008271.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUK11
          Length = 79073

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 350   aagtccatgcggcgttcgcgctcctc 375
             ||||||||||||||||| ||||||||
Sbjct: 36993 aagtccatgcggcgttcacgctcctc 36968
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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 264    cggccatgccgaggaacgccagcat 288
              ||||||||||||||| |||||||||
Sbjct: 920327 cggccatgccgaggaccgccagcat 920351
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>ref|XM_812742.1| Trypanosoma cruzi strain CL Brener ribosomal protein S25
           (Tc00.1047053509233.190) partial mRNA
          Length = 333

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 288 tgtccatcgtctccttgtcga 308
           |||||||||||||||||||||
Sbjct: 163 tgtccatcgtctccttgtcga 143
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>ref|XM_814621.1| Trypanosoma cruzi strain CL Brener ribosomal protein S25
           (Tc00.1047053504105.94) partial mRNA
          Length = 333

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 288 tgtccatcgtctccttgtcga 308
           |||||||||||||||||||||
Sbjct: 163 tgtccatcgtctccttgtcga 143
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>gb|AE005112.1| Halobacterium sp. NRC-1 section 143 of 170 of the complete genome
          Length = 12204

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   gtcgacgcggatctcgtcgac 324
             |||||||||||||||||||||
Sbjct: 10965 gtcgacgcggatctcgtcgac 10985
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 274    gaggaacgccagcatgtccatcgtctcc 301
              |||||| |||||| ||||||||||||||
Sbjct: 743103 gaggaaggccagcgtgtccatcgtctcc 743076
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>gb|AC092458.5| Homo sapiens BAC clone RP13-612N21 from 4, complete sequence
          Length = 126619

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 12   cagnattaacggttggataaaca 34
            ||| |||||||||||||||||||
Sbjct: 9811 cagtattaacggttggataaaca 9789


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,120,592
Number of Sequences: 3902068
Number of extensions: 2120592
Number of successful extensions: 51019
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50841
Number of HSP's gapped (non-prelim): 173
length of query: 378
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 356
effective length of database: 17,147,199,772
effective search space: 6104403118832
effective search space used: 6104403118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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