>CWC15_EMENI (Q5B020) Pre-mRNA-splicing factor cwc15|
          Length = 232

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 43/90 (47%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
 Frame = -3

Query: 432 RIKKERAEDXXXXXXXXXXXXXXXXXXXXXRGNPLINMNNSGSFNVKRRWDDDVVFKNQA 253
           +IKKER                        RGNPL+N ++   FN+KRRWDDDVVFKNQA
Sbjct: 146 KIKKERLAQKEKEERERAAKEEEQREVDIARGNPLLNPSD---FNIKRRWDDDVVFKNQA 202

Query: 252 RG-ETKTPKRFINDTIRSDFHRKFLHRYMK 166
           RG E K  K F+ND +RSDFH+KF+ +Y++
Sbjct: 203 RGTEDKRGKEFVNDLLRSDFHKKFMSKYVR 232

>CWC15_SCHPO (P78794) Pre-mRNA-splicing factor cwc15 (Complexed with cdc5|
           protein 15) (Cell cycle control protein cwf15)
          Length = 265

 Score = 73.9 bits (180), Expect = 3e-13
 Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
 Frame = -3

Query: 429 IKKERAEDXXXXXXXXXXXXXXXXXXXXXRGNPLINMNNSGSFNVKRRWDDDVVFKNQAR 250
           IK+ER  +                      GN L+N  +SGSF VKRRWD+DVVF+N  +
Sbjct: 177 IKQERKREQMLQEEKNRALEQEKREREIAFGNELLNKASSGSFQVKRRWDEDVVFRNTHK 236

Query: 249 GETKTPK-RFINDTIRSDFHRKFLHRYM 169
           G   TP+  F+ND +RS+FH+KFL R++
Sbjct: 237 GVDDTPRPGFVNDMLRSEFHKKFLARFV 264

>CWC15_YARLI (Q6C0E6) Pre-mRNA-splicing factor CWC15|
          Length = 215

 Score = 65.5 bits (158), Expect = 1e-10
 Identities = 33/89 (37%), Positives = 50/89 (56%)
 Frame = -3

Query: 432 RIKKERAEDXXXXXXXXXXXXXXXXXXXXXRGNPLINMNNSGSFNVKRRWDDDVVFKNQA 253
           RIK+ERA+                       GNPL+N        +KR+W++DVVF+NQ 
Sbjct: 133 RIKQERAQAKAREEERLALEEAKAREEQVAFGNPLMN-----PVAIKRKWNEDVVFRNQT 187

Query: 252 RGETKTPKRFINDTIRSDFHRKFLHRYMK 166
           + + +    ++ND IRSDFHRKF++RY++
Sbjct: 188 K-QARKEDSYVNDLIRSDFHRKFMNRYVR 215

>CWC15_DEBHA (Q6BP48) Pre-mRNA-splicing factor CWC15|
          Length = 226

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = -3

Query: 336 NPLINM---NNSGSFNVKRRWDDDVVFKNQARGETKTPKRFINDTIRSDFHRKFLHRYMK 166
           NPL+ +   +   +F +K+ W D   FK Q        + F NDT+ S+FH+ FL +Y++
Sbjct: 167 NPLVQVVGASTEANFKIKKSWRDSTAFKKQNSQNKNDDETFTNDTLNSEFHQNFLTKYIR 226

>CWC15_CANGA (Q6FVL2) Pre-mRNA-splicing factor CWC15|
          Length = 143

 Score = 36.2 bits (82), Expect = 0.068
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = -3

Query: 327 INMNNSGSFNVKRRWDDDVVFKNQA---RGETKTPKRFINDTIRSDFHRKFLHRYMK 166
           + + +     + ++ DD V +   A   R +   P++F NDT+RS  H++FL+R++K
Sbjct: 87  LEVEDKKDIKLVKKEDDSVSWGKTAFSRRKKVVKPEKFTNDTVRSQKHKEFLNRFVK 143

>CWC15_CANAL (Q59PD3) Pre-mRNA-splicing factor CWC15|
          Length = 224

 Score = 34.3 bits (77), Expect = 0.26
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -3

Query: 336 NPLINMNNSGSFNVKRRWDDDVVFKNQARGETKTPKR--FINDTIRSDFHRKFLHRYMK 166
           N  + +    S   K+ W     F N+++ E+   +   +  DT+ S  H+KF+ +Y++
Sbjct: 166 NNSLTLQTHDSSTKKKSWRSSTTFNNKSKKESTNDRNNNYTTDTLNSQHHQKFMSKYIR 224

>CWC15_YEAST (Q03772) Pre-mRNA-splicing factor CWC15 (Complexed with CEF1|
           protein 15)
          Length = 175

 Score = 30.8 bits (68), Expect = 2.9
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
 Frame = -3

Query: 324 NMNNSGSFNVKRRWDDDVVF-KNQARGET--------KTPKRFINDTIRSDFHRKFLHRY 172
           N    G  + +R W     F +++   ET        K+   +IND  +S++H++FLH++
Sbjct: 114 NEQLKGGNSSRRSWRKGTAFGRHKVTKETNIKEHATKKSASGYINDMTKSEYHQEFLHKH 173

Query: 171 MK 166
           ++
Sbjct: 174 VR 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,610,982
Number of Sequences: 219361
Number of extensions: 1236001
Number of successful extensions: 2497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2493
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4815021120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)