ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39f19 |
|---|---|
| Clone Library Name | barley_pub |
>SNX1_MOUSE (Q9WV80) Sorting nexin-1| Length = 522 Score = 53.5 bits (127), Expect = 5e-07 Identities = 38/176 (21%), Positives = 82/176 (46%), Gaps = 2/176 (1%) Frame = -2 Query: 618 FGKAIKLLGACEGDS-LEKVFSEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSI 442 F K++ +LG+ E ++ L + S++ E + Q +A+N F E L DY+R + + Sbjct: 347 FAKSLAMLGSSEDNTALSRALSQLAEVEEKIEQLHQEQANNDSFLLAELLSDYIRLLAIV 406 Query: 441 KATMLDRANAFRQHFDLDQERKYKELNLEKMKFMN-PXXXXXXXXXXXELKAASEEATKR 265 +A R +++ D + K + ++ + N P E ++ + + Sbjct: 407 RAAFDQRMKTWQRWQDAQATLQKKRESEARLLWANKPDKLQQAKDEITEWESRVTQYERD 466 Query: 264 YEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPKLEACS 97 +E I +V+ E+ RF+++K+ D ++ + + +A W + LP+ +A S Sbjct: 467 FERISTVVRKEVTRFEKEKSKDFKNHVMKYLETLLHSQQQLAKYWEAFLPEAKAIS 522
>SNX2_HUMAN (O60749) Sorting nexin-2| Length = 519 Score = 50.4 bits (119), Expect = 4e-06 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 2/174 (1%) Frame = -2 Query: 618 FGKAIKLLGACEGDS-LEKVFSEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSI 442 F K+ +LG E + L + S++ E + Q +A + + F E L DY+R + ++ Sbjct: 344 FAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFSDFYMFSELLSDYIRLIAAV 403 Query: 441 KATMLDRANAFRQHFDLDQER-KYKELNLEKMKFMNPXXXXXXXXXXXELKAASEEATKR 265 K R +++ D K +E + M P E +A ++ + Sbjct: 404 KGVFDHRMKCWQKWEDAQITLLKKREAEAKMMVANKPDKIQQAKNEIREWEAKVQQGERD 463 Query: 264 YEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPKLEA 103 +E I + E+ RF++++ D ++ + + + + W + LP+ +A Sbjct: 464 FEQISKTIRKEVGRFEKERVKDFKTVIIKYLESLVQTQQQLIKYWEAFLPEAKA 517
>SNX2_MOUSE (Q9CWK8) Sorting nexin-2| Length = 519 Score = 49.3 bits (116), Expect = 9e-06 Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 2/174 (1%) Frame = -2 Query: 618 FGKAIKLLGACEGDS-LEKVFSEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSI 442 F K+ +LG E + L + S++ E + Q +A + F E L DY+R + ++ Sbjct: 344 FAKSAAMLGNSEDHTALSRALSQLAEVEEKIDQLHQEQAFADFYMFSELLSDYIRLIAAV 403 Query: 441 KATMLDRANAFRQHFDLDQERKYKELNLEKMKFMN-PXXXXXXXXXXXELKAASEEATKR 265 K R +++ D K KM N P E +A ++ + Sbjct: 404 KGVFDHRMKCWQKWEDAQITLLKKRETEAKMMVANKPDKIQQAKNEIREWEAKVQQGERD 463 Query: 264 YEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVLPKLEA 103 +E I + E+ RF++++ D ++ + + + + W + LP+ +A Sbjct: 464 FEQISKTIRKEVGRFEKERVKDFKAVIIKYLESLVQTQQQLIKYWEAFLPEAKA 517
>DNAK_BACST (Q45551) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 607 Score = 35.8 bits (81), Expect = 0.10 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Frame = -2 Query: 522 KLQREADNLLFNFEEPLKDYVRAVQSIKATML----DRANAFRQHFDLDQERKYKELNLE 355 +L+ EAD L+F E+ LK+ V + D A + DLD+ RK KE E Sbjct: 502 ELRNEADQLIFTTEKTLKEVEGKVDEAEVKKAREAKDALKAALEKNDLDEIRKKKEALQE 561 Query: 354 KMKFMNPXXXXXXXXXXXELKAASEEATKRYEHIVSVMNDEL 229 ++ ++ +A ++ ATK+ ++IV +E+ Sbjct: 562 AVQQLSIKLYEQAAKQAQNQQAGADGATKKDDNIVDAEFEEV 603
>CENPE_HUMAN (Q02224) Centromeric protein E (CENP-E protein)| Length = 2663 Score = 31.2 bits (69), Expect = 2.5 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%) Frame = -2 Query: 579 DSLEKVFSEVGSKSEMLSIKLQREAD---NLLFNFEEPLKDYVRAVQSIKATMLDRANAF 409 D L+ E+ K E L+IK E N L F+E K A+QSI++ ML+ N Sbjct: 1519 DKLQNKIQEIYEKEEQLNIKQISEVQENVNELKQFKEHRKAKDSALQSIESKMLELTNRL 1578 Query: 408 RQ 403 ++ Sbjct: 1579 QE 1580
>DDX18_HUMAN (Q9NVP1) ATP-dependent RNA helicase DDX18 (EC 3.6.1.-) (DEAD box| protein 18) (Myc-regulated DEAD box protein) (MrDb) Length = 670 Score = 31.2 bits (69), Expect = 2.5 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%) Frame = -2 Query: 615 GKAIKLLGACEGDSLEKVFSEVGSKSEMLSIKLQREADNLL-FNFEEPLKDYVRAVQSIK 439 G I ++ A G L+ + + G + L + EAD +L FEE LK ++ + + + Sbjct: 299 GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR 358 Query: 438 ATMLDRANAFRQHFDLDQERKYKE 367 TML A R+ DL + KE Sbjct: 359 QTMLFSATQTRKVEDLARISLKKE 382
>VP5_BTV10 (P07389) Outer capsid protein VP5| Length = 526 Score = 30.0 bits (66), Expect = 5.7 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = -2 Query: 579 DSLEKVFSEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSIKATM 430 DS EK+ E SK +L+ LQREA + + +K+Y + + ++K+ + Sbjct: 156 DSYEKILKEEDSKMAILARALQREAAERSEDEIKMVKEYRQKIDALKSAI 205
>ROCK2_HUMAN (O75116) Rho-associated protein kinase 2 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 2) (p164 ROCK-2) (Rho kinase 2) Length = 1388 Score = 29.6 bits (65), Expect = 7.4 Identities = 26/119 (21%), Positives = 51/119 (42%), Gaps = 3/119 (2%) Frame = -2 Query: 558 SEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSIKATMLDRANAFRQHFDLDQER 379 +++G + + +LQ E D+L E L + L R+ A Q+ DL++E+ Sbjct: 891 TKLGKELQQKKQELQDERDSLAAQLEITLT-------KADSEQLARSIAEEQYSDLEKEK 943 Query: 378 KYKELNLEKMKFMNPXXXXXXXXXXXELKAASEEATKRYEHIVS---VMNDELARFQEQ 211 KEL +++M + L+ + T ++ + +N++L QEQ Sbjct: 944 IMKELEIKEMMARHKQELTEKDATIASLEETNRTLTSDVANLANEKEELNNKLKDVQEQ 1002
>VP5_BTV17 (P69364) Outer capsid protein VP5| Length = 526 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -2 Query: 579 DSLEKVFSEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSIKATMLDRANAFRQH 400 DS EK+ SK ML+ LQREA + + +K+Y + + ++K NA Sbjct: 156 DSYEKILKAEDSKMAMLARALQREASERSQDEIKMVKEYRQKIDALK-------NAIEIE 208 Query: 399 FDLDQERKYKEL 364 D QE +E+ Sbjct: 209 RDGMQEEAIQEI 220
>VP5_BTV11 (P69363) Outer capsid protein VP5| Length = 526 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/72 (30%), Positives = 34/72 (47%) Frame = -2 Query: 579 DSLEKVFSEVGSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSIKATMLDRANAFRQH 400 DS EK+ SK ML+ LQREA + + +K+Y + + ++K NA Sbjct: 156 DSYEKILKAEDSKMAMLARALQREASERSQDEIKMVKEYRQKIDALK-------NAIEIE 208 Query: 399 FDLDQERKYKEL 364 D QE +E+ Sbjct: 209 RDGMQEEAIQEI 220
>SODM_CHLRE (Q42684) Superoxide dismutase [Mn], mitochondrial precursor (EC| 1.15.1.1) Length = 218 Score = 29.3 bits (64), Expect = 9.7 Identities = 19/50 (38%), Positives = 27/50 (54%) Frame = -2 Query: 273 TKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRS 124 TK ++ V+ +N L +F E K D+GL A G KL KD+A R+ Sbjct: 29 TKHHQTYVNNLNAALDKFPELK--DLGLVDLNKAVGTDKLPKDVATVIRN 76
>YQEK_BACSU (P54456) Protein yqeK| Length = 186 Score = 29.3 bits (64), Expect = 9.7 Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 4/41 (9%) Frame = -2 Query: 267 RYEHIVSVMND--ELA-RF-QEQKTADIGLAFHEFAKGQAK 157 RY H V VMN ELA RF + K A+I FH++AK + K Sbjct: 18 RYIHTVGVMNTAIELAERFGADSKKAEIAAIFHDYAKFRPK 58
>YM05_YEAST (Q04472) Hypothetical 58.0 kDa protein in ILV2-ADE17 intergenic| region Length = 501 Score = 29.3 bits (64), Expect = 9.7 Identities = 13/52 (25%), Positives = 28/52 (53%) Frame = -2 Query: 513 READNLLFNFEEPLKDYVRAVQSIKATMLDRANAFRQHFDLDQERKYKELNL 358 +E+D + FN++E L+ Y+ A+ + +D + +L Y++LN+ Sbjct: 118 QESDKMDFNYKEALRRYIEALDECDRSHVDLLSDDYTRIELKIAEMYEKLNM 169
>DNAK_BACME (P05646) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 604 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 5/68 (7%) Frame = -2 Query: 606 IKLLGACEGDSLEKVFSEV-----GSKSEMLSIKLQREADNLLFNFEEPLKDYVRAVQSI 442 IK D ++++ E K ++L+ EAD L+F E+ LKD V+ Sbjct: 470 IKSSTGLSDDEIDRMVKEAEENADADKQRKEEVELRNEADQLVFTTEKTLKDLEGKVEEA 529 Query: 441 KATMLDRA 418 + T + A Sbjct: 530 EVTKANEA 537
>DNAK_APHHA (O52960) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 721 Score = 29.3 bits (64), Expect = 9.7 Identities = 33/145 (22%), Positives = 56/145 (38%), Gaps = 7/145 (4%) Frame = -2 Query: 615 GKAIKLLGACEGDSLEKVFSEVGS-----KSEMLSIKLQREADNLLFNFEEPLKDYVRAV 451 G IK G +E++ E + M I+L +AD+L ++ E LKD + Sbjct: 500 GIVIKETGGLSQQEIERMQQEAEQYADEDRKRMQRIELSNQADSLFYSHEATLKDNQGLI 559 Query: 450 -QSIKATMLDRANAFRQHFDLDQERKYKELNLEKMKFMNPXXXXXXXXXXXELKAASEEA 274 Q +KAT AN ++ E EL + + + + + +S+ + Sbjct: 560 PQKVKAT----ANKKKEELMAILEDPNVELGVIQTRLEDYRQAVLSMGSEVYSQGSSKSS 615 Query: 273 TKRYEHI-VSVMNDELARFQEQKTA 202 + YE + M E QE A Sbjct: 616 ARDYETVGEEEMTRETGNSQESNAA 640
>SNX41_YARLI (Q6C9X0) Sorting nexin-41| Length = 570 Score = 29.3 bits (64), Expect = 9.7 Identities = 18/65 (27%), Positives = 29/65 (44%) Frame = -2 Query: 297 LKAASEEATKRYEHIVSVMNDELARFQEQKTADIGLAFHEFAKGQAKLAKDIADAWRSVL 118 L+ A E A K + +L RF+ ++ AD+ F K AK D W+S Sbjct: 505 LEQALEVAQKDIVVANESVEKDLERFRAEREADLKCMIRAFLKCHIDWAKQNLDTWQSAQ 564 Query: 117 PKLEA 103 ++E+ Sbjct: 565 AEVES 569 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,566,838 Number of Sequences: 219361 Number of extensions: 1379142 Number of successful extensions: 3683 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3617 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3683 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
