ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473385.1| Oryza sativa (japonica cultivar-group), predic... 123 3e-25
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 123 3e-25
3emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4,... 123 3e-25
4ref|XM_744614.1| Aspergillus fumigatus Af293 mRNA capping enzyme... 42 0.92
5emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete... 42 0.92
6emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome 42 0.92
7emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, comple... 42 0.92
8ref|XM_467464.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.7
9emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chr... 40 3.7
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
11dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.7
12dbj|AK070855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.7
13emb|AL049871.4|CNS0000U Human chromosome 14 DNA sequence BAC R-6... 40 3.7
14gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, co... 40 3.7
15gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, com... 40 3.7
16gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, com... 40 3.7 
>ref|XM_473385.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1536

 Score =  123 bits (62), Expect = 3e-25
 Identities = 155/187 (82%)
 Strand = Plus / Minus

                                                                        
Query: 83   atcaaggacttgtnctcttcgttctcagcacaccctctacttctgagtacactcattaac 142
            ||||| ||||||| |||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 1508 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 1449

                                                                        
Query: 143  ctgtcgacactctccgngtcattcttctccttgaaatatgccaggagagtctcaacattg 202
            |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 1448 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 1389

                                                                        
Query: 203  gttggtcttggtctccatttacttgcacttttaactgctgtggctttctncaaacatgac 262
            || ||||||||||||||||| |||| ||||  |||||| |||||||||| ||||||||||
Sbjct: 1388 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 1329

                   
Query: 263  agagctt 269
            || ||||
Sbjct: 1328 agtgctt 1322
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  123 bits (62), Expect = 3e-25
 Identities = 155/187 (82%)
 Strand = Plus / Plus

                                                                            
Query: 83       atcaaggacttgtnctcttcgttctcagcacaccctctacttctgagtacactcattaac 142
                ||||| ||||||| |||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 27229964 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 27230023

                                                                            
Query: 143      ctgtcgacactctccgngtcattcttctccttgaaatatgccaggagagtctcaacattg 202
                |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 27230024 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 27230083

                                                                            
Query: 203      gttggtcttggtctccatttacttgcacttttaactgctgtggctttctncaaacatgac 262
                || ||||||||||||||||| |||| ||||  |||||| |||||||||| ||||||||||
Sbjct: 27230084 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 27230143

                       
Query: 263      agagctt 269
                || ||||
Sbjct: 27230144 agtgctt 27230150
to top
>emb|AL606728.3|OSJN00102 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0038F03,
             complete sequence
          Length = 136656

 Score =  123 bits (62), Expect = 3e-25
 Identities = 155/187 (82%)
 Strand = Plus / Plus

                                                                         
Query: 83    atcaaggacttgtnctcttcgttctcagcacaccctctacttctgagtacactcattaac 142
             ||||| ||||||| |||||| |||||  | |||| ||||||||| |||||| |||| |||
Sbjct: 61053 atcaatgacttgtactcttcattctcctcgcaccgtctacttctaagtacattcatcaac 61112

                                                                         
Query: 143   ctgtcgacactctccgngtcattcttctccttgaaatatgccaggagagtctcaacattg 202
             |||||  | || || |  || || |||||||||||||  || |||||  |||||||||||
Sbjct: 61113 ctgtctgcgctttctgcatcgtttttctccttgaaattcgcaaggaggctctcaacattg 61172

                                                                         
Query: 203   gttggtcttggtctccatttacttgcacttttaactgctgtggctttctncaaacatgac 262
             || ||||||||||||||||| |||| ||||  |||||| |||||||||| ||||||||||
Sbjct: 61173 gtgggtcttggtctccatttgcttggacttgcaactgcagtggctttctccaaacatgac 61232

                    
Query: 263   agagctt 269
             || ||||
Sbjct: 61233 agtgctt 61239
to top
>ref|XM_744614.1| Aspergillus fumigatus Af293 mRNA capping enzyme subunit alpha
           (Afu2g05780) partial mRNA
          Length = 1248

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 166 cttctccttgaaatatgccag 186
           |||||||||||||||||||||
Sbjct: 504 cttctccttgaaatatgccag 484
to top
>emb|CR925678.1| Ehrlichia ruminantium str. Welgevonden, complete genome
          Length = 1512977

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     gctattcactaatatatcatt 33
              |||||||||||||||||||||
Sbjct: 417647 gctattcactaatatatcatt 417667
to top
>emb|CR925677.1| Ehrlichia ruminantium str. Gardel, complete genome
          Length = 1499920

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     gctattcactaatatatcatt 33
              |||||||||||||||||||||
Sbjct: 414971 gctattcactaatatatcatt 414991
to top
>emb|CR767821.1| Ehrlichia ruminantium strain Welgevonden, complete genome
          Length = 1516355

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 13     gctattcactaatatatcatt 33
              |||||||||||||||||||||
Sbjct: 437791 gctattcactaatatatcatt 437811
to top
>ref|XM_467464.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2665

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  tgcacttttaactgctgtgg 245
            ||||||||||||||||||||
Sbjct: 1534 tgcacttttaactgctgtgg 1553
to top
>emb|AL158073.10| Human DNA sequence from clone RP11-323A7 on chromosome 9 Contains a
             cell division cycle associated 7 (JPO1, FLJ14722) (CDCA7)
             pseudogene, complete sequence
          Length = 186334

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   cttttaactgctgtggcttt 249
             ||||||||||||||||||||
Sbjct: 23749 cttttaactgctgtggcttt 23768
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 226      tgcacttttaactgctgtgg 245
                ||||||||||||||||||||
Sbjct: 29692382 tgcacttttaactgctgtgg 29692401
to top
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1191_G08
          Length = 172832

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   tgcacttttaactgctgtgg 245
             ||||||||||||||||||||
Sbjct: 61361 tgcacttttaactgctgtgg 61380
to top
>dbj|AK070855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066G02, full
            insert sequence
          Length = 2664

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  tgcacttttaactgctgtgg 245
            ||||||||||||||||||||
Sbjct: 1533 tgcacttttaactgctgtgg 1552
to top
>emb|AL049871.4|CNS0000U Human chromosome 14 DNA sequence BAC R-696D21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 169650

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cttttaactgctgtggcttt 249
              ||||||||||||||||||||
Sbjct: 137048 cttttaactgctgtggcttt 137029
to top
>gb|AC104197.14| Mus musculus chromosome 8, clone RP24-319N16, complete sequence
          Length = 195334

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 230    cttttaactgctgtggcttt 249
              ||||||||||||||||||||
Sbjct: 189820 cttttaactgctgtggcttt 189839
to top
>gb|AC115820.11| Mus musculus chromosome 8, clone RP23-479K9, complete sequence
          Length = 185977

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    cttttaactgctgtggcttt 249
              ||||||||||||||||||||
Sbjct: 135910 cttttaactgctgtggcttt 135891
to top
>gb|AC000114.1|HSAC000114 Human PAC clone DJ527C21 from Xq23, complete sequence
          Length = 172151

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   cttttaactgctgtggcttt 249
             ||||||||||||||||||||
Sbjct: 89757 cttttaactgctgtggcttt 89738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,018,792
Number of Sequences: 3902068
Number of extensions: 2018792
Number of successful extensions: 37785
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37734
Number of HSP's gapped (non-prelim): 51
length of query: 280
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 258
effective length of database: 17,147,199,772
effective search space: 4423977541176
effective search space used: 4423977541176
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top