ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_474227.1| Oryza sativa (japonica cultivar-group), predic... 210 4e-51
2emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4,... 210 4e-51
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 210 4e-51
4dbj|AK069126.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
5dbj|AK105717.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 1e-48
6gb|AY111090.1| Zea mays CL581_1 mRNA sequence 119 1e-23
7gb|AC138735.3| Gallus gallus clone TAM31-15F7, complete sequence 42 2.2
8emb|AL359266.14| Human DNA sequence from clone RP11-26P21 on chr... 42 2.2
9gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromoso... 42 2.2
10gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana... 42 2.2
11gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete... 42 2.2
12gb|AC159212.3| Gallus gallus BAC clone CH261-173O18 from chromos... 42 2.2
13gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, com... 40 8.8
14gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosom... 40 8.8
15gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.8
16ref|XM_755875.1| Ustilago maydis 521 hypothetical protein (UM048... 40 8.8
17ref|XM_570283.1| Cryptococcus neoformans var. neoformans JEC21 A... 40 8.8
18gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome... 40 8.8
19emb|AL354808.24| Human DNA sequence from clone RP11-523H24 on ch... 40 8.8
20gb|AC164087.5| Mus musculus BAC clone RP23-408K7 from chromosome... 40 8.8
21emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chro... 40 8.8
22gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence 40 8.8
23dbj|AK092600.1| Homo sapiens cDNA FLJ35281 fis, clone PROST2007248 40 8.8
24gb|AC091861.3| Homo sapiens chromosome 5 clone CTD-2339B8, compl... 40 8.8
25gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, compl... 40 8.8
26gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence 40 8.8
27gb|AC005406.2| Homo sapiens clone b128f11, complete sequence 40 8.8
28ref|NM_001015813.1| Xenopus tropicalis MGC97610 protein (MGC9761... 40 8.8
29gb|BC090094.1| Xenopus tropicalis MGC97610 protein, mRNA (cDNA c... 40 8.8
30gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, com... 40 8.8
31emb|CR762227.2| Xenopus tropicalis finished cDNA, clone TGas034h23 40 8.8
32gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosom... 40 8.8
33emb|BX000453.8| Zebrafish DNA sequence from clone DKEY-157G7 in ... 40 8.8
34emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on ch... 40 8.8
35gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosom... 40 8.8

>ref|XM_474227.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1356

 Score =  210 bits (106), Expect = 4e-51
 Identities = 232/274 (84%)
 Strand = Plus / Minus

                                                                        
Query: 375  gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434
            |||||||  ||| |||| ||||||  ||||||||||||||  || ||| | |||||||| 
Sbjct: 1337 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 1278

                                                                        
Query: 435  aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494
            | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1277 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 1218

                                                                        
Query: 495  atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554
            |||||||| ||||| || |||||||| || |||| ||| || || ||||| |||||||||
Sbjct: 1217 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 1158

                                                                        
Query: 555  gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614
            |||||||| |||||||| || || || |||||||||||||| || || ||||||||||  
Sbjct: 1157 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 1098

                                              
Query: 615  gcctgaaaatgggagcggtcaatcccttcgccat 648
            ||||||||||| || || |||||| |||| ||||
Sbjct: 1097 gcctgaaaatgagatcgatcaatcacttcaccat 1064



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>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01,
             complete sequence
          Length = 163448

 Score =  210 bits (106), Expect = 4e-51
 Identities = 232/274 (84%)
 Strand = Plus / Plus

                                                                         
Query: 375   gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434
             |||||||  ||| |||| ||||||  ||||||||||||||  || ||| | |||||||| 
Sbjct: 60325 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 60384

                                                                         
Query: 435   aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494
             | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 60385 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 60444

                                                                         
Query: 495   atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554
             |||||||| ||||| || |||||||| || |||| ||| || || ||||| |||||||||
Sbjct: 60445 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 60504

                                                                         
Query: 555   gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614
             |||||||| |||||||| || || || |||||||||||||| || || ||||||||||  
Sbjct: 60505 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 60564

                                               
Query: 615   gcctgaaaatgggagcggtcaatcccttcgccat 648
             ||||||||||| || || |||||| |||| ||||
Sbjct: 60565 gcctgaaaatgagatcgatcaatcacttcaccat 60598



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  210 bits (106), Expect = 4e-51
 Identities = 232/274 (84%)
 Strand = Plus / Plus

                                                                            
Query: 375      gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434
                |||||||  ||| |||| ||||||  ||||||||||||||  || ||| | |||||||| 
Sbjct: 33848426 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 33848485

                                                                            
Query: 435      aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494
                | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 33848486 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 33848545

                                                                            
Query: 495      atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554
                |||||||| ||||| || |||||||| || |||| ||| || || ||||| |||||||||
Sbjct: 33848546 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 33848605

                                                                            
Query: 555      gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614
                |||||||| |||||||| || || || |||||||||||||| || || ||||||||||  
Sbjct: 33848606 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 33848665

                                                  
Query: 615      gcctgaaaatgggagcggtcaatcccttcgccat 648
                ||||||||||| || || |||||| |||| ||||
Sbjct: 33848666 gcctgaaaatgagatcgatcaatcacttcaccat 33848699



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>dbj|AK069126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007K22, full
            insert sequence
          Length = 2025

 Score =  210 bits (106), Expect = 4e-51
 Identities = 232/274 (84%)
 Strand = Plus / Minus

                                                                        
Query: 375  gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434
            |||||||  ||| |||| ||||||  ||||||||||||||  || ||| | |||||||| 
Sbjct: 1557 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 1498

                                                                        
Query: 435  aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494
            | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1497 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 1438

                                                                        
Query: 495  atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554
            |||||||| ||||| || |||||||| || |||| ||| || || ||||| |||||||||
Sbjct: 1437 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 1378

                                                                        
Query: 555  gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614
            |||||||| |||||||| || || || |||||||||||||| || || ||||||||||  
Sbjct: 1377 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 1318

                                              
Query: 615  gcctgaaaatgggagcggtcaatcccttcgccat 648
            ||||||||||| || || |||||| |||| ||||
Sbjct: 1317 gcctgaaaatgagatcgatcaatcacttcaccat 1284



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>dbj|AK105717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F05, full
            insert sequence
          Length = 1478

 Score =  202 bits (102), Expect = 1e-48
 Identities = 231/274 (84%)
 Strand = Plus / Minus

                                                                        
Query: 375  gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434
            |||||||  ||| |||| ||||||  ||||||||||||||  || ||| | |||||||| 
Sbjct: 1066 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 1007

                                                                        
Query: 435  aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494
            | ||||||||| ||| | || |||||||||||||||||||||||||||||||||||||| 
Sbjct: 1006 agaactgcaatcgttccagtgctactcctgattttctctattccccttgatatcatgcaa 947

                                                                        
Query: 495  atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554
            |||||||| ||||| || |||||||| || |||| ||| || || ||||| |||||||||
Sbjct: 946  atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 887

                                                                        
Query: 555  gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614
            |||||||| |||||||| || || || |||||||||||||| || || ||||||||||  
Sbjct: 886  gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 827

                                              
Query: 615  gcctgaaaatgggagcggtcaatcccttcgccat 648
            ||||||||||| || || |||||| |||| ||||
Sbjct: 826  gcctgaaaatgagatcgatcaatcacttcaccat 793



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>gb|AY111090.1| Zea mays CL581_1 mRNA sequence
          Length = 1655

 Score =  119 bits (60), Expect = 1e-23
 Identities = 93/104 (89%)
 Strand = Plus / Minus

                                                                        
Query: 540  gaatagactgcttcagctatctgtcttgtcatcctttcctggacctgaagcttgcacccg 599
            ||||| || |||||||||||||| |||||||||||||| || ||||||||||||||||||
Sbjct: 1111 gaataaaccgcttcagctatctgccttgtcatcctttcttgaacctgaagcttgcacccg 1052

                                                        
Query: 600  tagaaatgaaccagagcctgaaaatgggagcggtcaatcccttc 643
            |||||||||||||  ||||||||||| || || ||||| |||||
Sbjct: 1051 tagaaatgaaccaacgcctgaaaatgcgaccgatcaatgccttc 1008



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>gb|AC138735.3| Gallus gallus clone TAM31-15F7, complete sequence
          Length = 144409

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 559   tctgtcttgtcatcctttcct 579
             |||||||||||||||||||||
Sbjct: 68052 tctgtcttgtcatcctttcct 68072



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>emb|AL359266.14| Human DNA sequence from clone RP11-26P21 on chromosome 13 Contains the
             3' end of the DIAPH3 gene for diaphanous homolog 3
             (Drosophila), complete sequence
          Length = 206407

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 393   agaaaggatgccttggcagaa 413
             |||||||||||||||||||||
Sbjct: 16225 agaaaggatgccttggcagaa 16245



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>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete
              sequence
          Length = 240564

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 559    tctgtcttgtcatcctttcct 579
              |||||||||||||||||||||
Sbjct: 202210 tctgtcttgtcatcctttcct 202230



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>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I,
             complete sequence
          Length = 86372

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 124   aaccaaaactttctggtgctt 144
             |||||||||||||||||||||
Sbjct: 56051 aaccaaaactttctggtgctt 56071



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>gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete sequence
          Length = 114142

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 201   tgcaactgcttggtaaaatgg 221
             |||||||||||||||||||||
Sbjct: 49421 tgcaactgcttggtaaaatgg 49441



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>gb|AC159212.3| Gallus gallus BAC clone CH261-173O18 from chromosome unknown, complete
              sequence
          Length = 236827

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 559    tctgtcttgtcatcctttcct 579
              |||||||||||||||||||||
Sbjct: 126012 tctgtcttgtcatcctttcct 125992



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>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence
          Length = 174156

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 201    tgcaactgcttggtaaaatg 220
              ||||||||||||||||||||
Sbjct: 114375 tgcaactgcttggtaaaatg 114394



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>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence
          Length = 189323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    gcagtgcctgccttgctgaa 286
              ||||||||||||||||||||
Sbjct: 110077 gcagtgcctgccttgctgaa 110058



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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
              sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 577    cctggacctgaagcttgcac 596
              ||||||||||||||||||||
Sbjct: 420359 cctggacctgaagcttgcac 420340



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>ref|XM_755875.1| Ustilago maydis 521 hypothetical protein (UM04821.1) partial mRNA
          Length = 3276

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 406  tggcagaagaatcggtcgag 425
            ||||||||||||||||||||
Sbjct: 1411 tggcagaagaatcggtcgag 1392



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>ref|XM_570283.1| Cryptococcus neoformans var. neoformans JEC21 ATP
           phosphoribosyltransferase (CND01510) partial mRNA
          Length = 1158

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 577 cctggacctgaagcttgcac 596
           ||||||||||||||||||||
Sbjct: 512 cctggacctgaagcttgcac 493



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>gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome 3, complete sequence
          Length = 213637

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 210   ttggtaaaatggcaaccatg 229
             ||||||||||||||||||||
Sbjct: 46958 ttggtaaaatggcaaccatg 46939



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>emb|AL354808.24| Human DNA sequence from clone RP11-523H24 on chromosome 13 Contains
            the 3' end of a novel gene, the gene for paraspeckle
            protein 1 (PSP1) (FLJ10955), two novel genes, a
            sialyltransferase 7D (SIAT7D) pseudogene, the 3' end of a
            variant of the ZNF237 gene for zinc finger protein 237
            and two CpG islands, complete sequence
          Length = 169303

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 610  ccagagcctgaaaatgggag 629
            ||||||||||||||||||||
Sbjct: 5145 ccagagcctgaaaatgggag 5126



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>gb|AC164087.5| Mus musculus BAC clone RP23-408K7 from chromosome 9, complete sequence
          Length = 211783

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 604   aatgaaccagagcctgaaaa 623
             ||||||||||||||||||||
Sbjct: 57352 aatgaaccagagcctgaaaa 57371



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>emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chromosome 4 Contains the 3'
              end of the Mpdz gene for multiple PDZ domain protein,
              complete sequence
          Length = 180629

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    catcttcagacacaacattc 171
              ||||||||||||||||||||
Sbjct: 116700 catcttcagacacaacattc 116719



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>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence
          Length = 163065

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   acatcttcagacacaacatt 170
             ||||||||||||||||||||
Sbjct: 13433 acatcttcagacacaacatt 13414



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>dbj|AK092600.1| Homo sapiens cDNA FLJ35281 fis, clone PROST2007248
          Length = 3528

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 610 ccagagcctgaaaatgggag 629
           ||||||||||||||||||||
Sbjct: 496 ccagagcctgaaaatgggag 515



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>gb|AC091861.3| Homo sapiens chromosome 5 clone CTD-2339B8, complete sequence
          Length = 39248

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 365  ctgattagcagtatctaaca 384
            ||||||||||||||||||||
Sbjct: 6729 ctgattagcagtatctaaca 6710



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>gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, complete sequence
          Length = 192731

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 365    ctgattagcagtatctaaca 384
              ||||||||||||||||||||
Sbjct: 176046 ctgattagcagtatctaaca 176027



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>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence
          Length = 169462

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 151   acatcttcagacacaacatt 170
             ||||||||||||||||||||
Sbjct: 95741 acatcttcagacacaacatt 95722



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>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence
          Length = 226345

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 365   ctgattagcagtatctaaca 384
             ||||||||||||||||||||
Sbjct: 16681 ctgattagcagtatctaaca 16700



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>ref|NM_001015813.1| Xenopus tropicalis MGC97610 protein (MGC97610), mRNA
          Length = 3735

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 606  tgaaccagagcctgaaaatg 625
            ||||||||||||||||||||
Sbjct: 1060 tgaaccagagcctgaaaatg 1079



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>gb|BC090094.1| Xenopus tropicalis MGC97610 protein, mRNA (cDNA clone MGC:97610
            IMAGE:6978326), complete cds
          Length = 3735

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 606  tgaaccagagcctgaaaatg 625
            ||||||||||||||||||||
Sbjct: 1060 tgaaccagagcctgaaaatg 1079



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>gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, complete sequence
          Length = 204416

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 201  tgcaactgcttggtaaaatg 220
            ||||||||||||||||||||
Sbjct: 2438 tgcaactgcttggtaaaatg 2457



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>emb|CR762227.2| Xenopus tropicalis finished cDNA, clone TGas034h23
          Length = 946

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 606 tgaaccagagcctgaaaatg 625
           ||||||||||||||||||||
Sbjct: 67  tgaaccagagcctgaaaatg 86



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>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence
          Length = 249504

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 267   gcagtgcctgccttgctgaa 286
             ||||||||||||||||||||
Sbjct: 31759 gcagtgcctgccttgctgaa 31740



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>emb|BX000453.8| Zebrafish DNA sequence from clone DKEY-157G7 in linkage group 7,
             complete sequence
          Length = 163585

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 26    ttaaaacattatactgtattgctc 49
             ||||||||||||||| ||||||||
Sbjct: 69138 ttaaaacattatactatattgctc 69161



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>emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on chromosome 9, complete
              sequence
          Length = 192913

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 604    aatgaaccagagcctgaaaa 623
              ||||||||||||||||||||
Sbjct: 178070 aatgaaccagagcctgaaaa 178089



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>gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosome 9, complete sequence
          Length = 219361

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 604    aatgaaccagagcctgaaaa 623
              ||||||||||||||||||||
Sbjct: 165746 aatgaaccagagcctgaaaa 165765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,229,633
Number of Sequences: 3902068
Number of extensions: 5229633
Number of successful extensions: 93028
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92930
Number of HSP's gapped (non-prelim): 98
length of query: 648
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 625
effective length of database: 17,143,297,704
effective search space: 10714561065000
effective search space used: 10714561065000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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