| Clone Name | rbags39f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474227.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 210 bits (106), Expect = 4e-51 Identities = 232/274 (84%) Strand = Plus / Minus Query: 375 gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434 ||||||| ||| |||| |||||| |||||||||||||| || ||| | |||||||| Sbjct: 1337 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 1278 Query: 435 aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494 | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1277 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 1218 Query: 495 atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554 |||||||| ||||| || |||||||| || |||| ||| || || ||||| ||||||||| Sbjct: 1217 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 1158 Query: 555 gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614 |||||||| |||||||| || || || |||||||||||||| || || |||||||||| Sbjct: 1157 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 1098 Query: 615 gcctgaaaatgggagcggtcaatcccttcgccat 648 ||||||||||| || || |||||| |||| |||| Sbjct: 1097 gcctgaaaatgagatcgatcaatcacttcaccat 1064
>emb|AL606999.3|OSJN00127 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K01, complete sequence Length = 163448 Score = 210 bits (106), Expect = 4e-51 Identities = 232/274 (84%) Strand = Plus / Plus Query: 375 gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434 ||||||| ||| |||| |||||| |||||||||||||| || ||| | |||||||| Sbjct: 60325 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 60384 Query: 435 aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494 | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 60385 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 60444 Query: 495 atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554 |||||||| ||||| || |||||||| || |||| ||| || || ||||| ||||||||| Sbjct: 60445 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 60504 Query: 555 gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614 |||||||| |||||||| || || || |||||||||||||| || || |||||||||| Sbjct: 60505 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 60564 Query: 615 gcctgaaaatgggagcggtcaatcccttcgccat 648 ||||||||||| || || |||||| |||| |||| Sbjct: 60565 gcctgaaaatgagatcgatcaatcacttcaccat 60598
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 210 bits (106), Expect = 4e-51 Identities = 232/274 (84%) Strand = Plus / Plus Query: 375 gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434 ||||||| ||| |||| |||||| |||||||||||||| || ||| | |||||||| Sbjct: 33848426 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 33848485 Query: 435 aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494 | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 33848486 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 33848545 Query: 495 atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554 |||||||| ||||| || |||||||| || |||| ||| || || ||||| ||||||||| Sbjct: 33848546 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 33848605 Query: 555 gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614 |||||||| |||||||| || || || |||||||||||||| || || |||||||||| Sbjct: 33848606 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 33848665 Query: 615 gcctgaaaatgggagcggtcaatcccttcgccat 648 ||||||||||| || || |||||| |||| |||| Sbjct: 33848666 gcctgaaaatgagatcgatcaatcacttcaccat 33848699
>dbj|AK069126.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007K22, full insert sequence Length = 2025 Score = 210 bits (106), Expect = 4e-51 Identities = 232/274 (84%) Strand = Plus / Minus Query: 375 gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434 ||||||| ||| |||| |||||| |||||||||||||| || ||| | |||||||| Sbjct: 1557 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 1498 Query: 435 aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494 | ||||||||| ||||| || |||||||||||||||||||||||||||||||||||||| Sbjct: 1497 agaactgcaatcgttgcagtgctactcctgattttctctattccccttgatatcatgcaa 1438 Query: 495 atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554 |||||||| ||||| || |||||||| || |||| ||| || || ||||| ||||||||| Sbjct: 1437 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 1378 Query: 555 gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614 |||||||| |||||||| || || || |||||||||||||| || || |||||||||| Sbjct: 1377 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 1318 Query: 615 gcctgaaaatgggagcggtcaatcccttcgccat 648 ||||||||||| || || |||||| |||| |||| Sbjct: 1317 gcctgaaaatgagatcgatcaatcacttcaccat 1284
>dbj|AK105717.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-F05, full insert sequence Length = 1478 Score = 202 bits (102), Expect = 1e-48 Identities = 231/274 (84%) Strand = Plus / Minus Query: 375 gtatctaacacgctctgtagaaaggatgccttggcagaagaatcggtcgagaactgacct 434 ||||||| ||| |||| |||||| |||||||||||||| || ||| | |||||||| Sbjct: 1066 gtatctactacgttctgcagaaagcgtgccttggcagaagggtccgtcaaaaactgaccc 1007 Query: 435 aaaactgcaattgttgctgtactactcctgattttctctattccccttgatatcatgcag 494 | ||||||||| ||| | || |||||||||||||||||||||||||||||||||||||| Sbjct: 1006 agaactgcaatcgttccagtgctactcctgattttctctattccccttgatatcatgcaa 947 Query: 495 atgtggttggcttccacgacaactatagctccacgatgtgagacggaatagactgcttca 554 |||||||| ||||| || |||||||| || |||| ||| || || ||||| ||||||||| Sbjct: 946 atgtggttagcttctacaacaactatggccccacaatgcgaaacagaataaactgcttca 887 Query: 555 gctatctgtcttgtcatcctttcctggacctgaagcttgcacccgtagaaatgaaccaga 614 |||||||| |||||||| || || || |||||||||||||| || || |||||||||| Sbjct: 886 gctatctgccttgtcattctctcttgaacctgaagcttgcatccataaaaatgaaccaag 827 Query: 615 gcctgaaaatgggagcggtcaatcccttcgccat 648 ||||||||||| || || |||||| |||| |||| Sbjct: 826 gcctgaaaatgagatcgatcaatcacttcaccat 793
>gb|AY111090.1| Zea mays CL581_1 mRNA sequence Length = 1655 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Minus Query: 540 gaatagactgcttcagctatctgtcttgtcatcctttcctggacctgaagcttgcacccg 599 ||||| || |||||||||||||| |||||||||||||| || |||||||||||||||||| Sbjct: 1111 gaataaaccgcttcagctatctgccttgtcatcctttcttgaacctgaagcttgcacccg 1052 Query: 600 tagaaatgaaccagagcctgaaaatgggagcggtcaatcccttc 643 ||||||||||||| ||||||||||| || || ||||| ||||| Sbjct: 1051 tagaaatgaaccaacgcctgaaaatgcgaccgatcaatgccttc 1008
>gb|AC138735.3| Gallus gallus clone TAM31-15F7, complete sequence Length = 144409 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 559 tctgtcttgtcatcctttcct 579 ||||||||||||||||||||| Sbjct: 68052 tctgtcttgtcatcctttcct 68072
>emb|AL359266.14| Human DNA sequence from clone RP11-26P21 on chromosome 13 Contains the 3' end of the DIAPH3 gene for diaphanous homolog 3 (Drosophila), complete sequence Length = 206407 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 393 agaaaggatgccttggcagaa 413 ||||||||||||||||||||| Sbjct: 16225 agaaaggatgccttggcagaa 16245
>gb|AC160141.2| Gallus gallus BAC clone CH261-182D6 from chromosome unknown, complete sequence Length = 240564 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 559 tctgtcttgtcatcctttcct 579 ||||||||||||||||||||| Sbjct: 202210 tctgtcttgtcatcctttcct 202230
>gb|AC003113.2|AC003113 Genomic sequence for Arabidopsis thaliana BAC F24O1 from chromosome I, complete sequence Length = 86372 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 124 aaccaaaactttctggtgctt 144 ||||||||||||||||||||| Sbjct: 56051 aaccaaaactttctggtgctt 56071
>gb|AC150475.2| Dasypus novemcinctus clone VMRC5-254H15, complete sequence Length = 114142 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 201 tgcaactgcttggtaaaatgg 221 ||||||||||||||||||||| Sbjct: 49421 tgcaactgcttggtaaaatgg 49441
>gb|AC159212.3| Gallus gallus BAC clone CH261-173O18 from chromosome unknown, complete sequence Length = 236827 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 559 tctgtcttgtcatcctttcct 579 ||||||||||||||||||||| Sbjct: 126012 tctgtcttgtcatcctttcct 125992
>gb|AC165230.12| Mus musculus chromosome 1, clone RP23-65C14, complete sequence Length = 174156 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tgcaactgcttggtaaaatg 220 |||||||||||||||||||| Sbjct: 114375 tgcaactgcttggtaaaatg 114394
>gb|AC149057.7| Mus musculus BAC clone RP23-345D18 from chromosome 7, complete sequence Length = 189323 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gcagtgcctgccttgctgaa 286 |||||||||||||||||||| Sbjct: 110077 gcagtgcctgccttgctgaa 110058
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 cctggacctgaagcttgcac 596 |||||||||||||||||||| Sbjct: 420359 cctggacctgaagcttgcac 420340
>ref|XM_755875.1| Ustilago maydis 521 hypothetical protein (UM04821.1) partial mRNA Length = 3276 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 tggcagaagaatcggtcgag 425 |||||||||||||||||||| Sbjct: 1411 tggcagaagaatcggtcgag 1392
>ref|XM_570283.1| Cryptococcus neoformans var. neoformans JEC21 ATP phosphoribosyltransferase (CND01510) partial mRNA Length = 1158 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 577 cctggacctgaagcttgcac 596 |||||||||||||||||||| Sbjct: 512 cctggacctgaagcttgcac 493
>gb|AC147635.4| Mus musculus BAC clone RP23-290C4 from chromosome 3, complete sequence Length = 213637 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 210 ttggtaaaatggcaaccatg 229 |||||||||||||||||||| Sbjct: 46958 ttggtaaaatggcaaccatg 46939
>emb|AL354808.24| Human DNA sequence from clone RP11-523H24 on chromosome 13 Contains the 3' end of a novel gene, the gene for paraspeckle protein 1 (PSP1) (FLJ10955), two novel genes, a sialyltransferase 7D (SIAT7D) pseudogene, the 3' end of a variant of the ZNF237 gene for zinc finger protein 237 and two CpG islands, complete sequence Length = 169303 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 ccagagcctgaaaatgggag 629 |||||||||||||||||||| Sbjct: 5145 ccagagcctgaaaatgggag 5126
>gb|AC164087.5| Mus musculus BAC clone RP23-408K7 from chromosome 9, complete sequence Length = 211783 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 aatgaaccagagcctgaaaa 623 |||||||||||||||||||| Sbjct: 57352 aatgaaccagagcctgaaaa 57371
>emb|AL670939.6| Mouse DNA sequence from clone RP23-59O12 on chromosome 4 Contains the 3' end of the Mpdz gene for multiple PDZ domain protein, complete sequence Length = 180629 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 catcttcagacacaacattc 171 |||||||||||||||||||| Sbjct: 116700 catcttcagacacaacattc 116719
>gb|AC021483.11| Homo sapiens, clone RP11-38G5, complete sequence Length = 163065 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acatcttcagacacaacatt 170 |||||||||||||||||||| Sbjct: 13433 acatcttcagacacaacatt 13414
>dbj|AK092600.1| Homo sapiens cDNA FLJ35281 fis, clone PROST2007248 Length = 3528 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 610 ccagagcctgaaaatgggag 629 |||||||||||||||||||| Sbjct: 496 ccagagcctgaaaatgggag 515
>gb|AC091861.3| Homo sapiens chromosome 5 clone CTD-2339B8, complete sequence Length = 39248 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ctgattagcagtatctaaca 384 |||||||||||||||||||| Sbjct: 6729 ctgattagcagtatctaaca 6710
>gb|AC026698.6| Homo sapiens chromosome 5 clone CTC-457H17, complete sequence Length = 192731 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 365 ctgattagcagtatctaaca 384 |||||||||||||||||||| Sbjct: 176046 ctgattagcagtatctaaca 176027
>gb|AC026826.7| Homo sapiens, clone RP11-591L14, complete sequence Length = 169462 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 acatcttcagacacaacatt 170 |||||||||||||||||||| Sbjct: 95741 acatcttcagacacaacatt 95722
>gb|AC005406.2| Homo sapiens clone b128f11, complete sequence Length = 226345 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 365 ctgattagcagtatctaaca 384 |||||||||||||||||||| Sbjct: 16681 ctgattagcagtatctaaca 16700
>ref|NM_001015813.1| Xenopus tropicalis MGC97610 protein (MGC97610), mRNA Length = 3735 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 tgaaccagagcctgaaaatg 625 |||||||||||||||||||| Sbjct: 1060 tgaaccagagcctgaaaatg 1079
>gb|BC090094.1| Xenopus tropicalis MGC97610 protein, mRNA (cDNA clone MGC:97610 IMAGE:6978326), complete cds Length = 3735 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 tgaaccagagcctgaaaatg 625 |||||||||||||||||||| Sbjct: 1060 tgaaccagagcctgaaaatg 1079
>gb|AC122122.14| Mus musculus chromosome 1, clone RP23-15D21, complete sequence Length = 204416 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 201 tgcaactgcttggtaaaatg 220 |||||||||||||||||||| Sbjct: 2438 tgcaactgcttggtaaaatg 2457
>emb|CR762227.2| Xenopus tropicalis finished cDNA, clone TGas034h23 Length = 946 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 606 tgaaccagagcctgaaaatg 625 |||||||||||||||||||| Sbjct: 67 tgaaccagagcctgaaaatg 86
>gb|AC151602.4| Mus musculus BAC clone RP23-218K15 from chromosome 7, complete sequence Length = 249504 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 gcagtgcctgccttgctgaa 286 |||||||||||||||||||| Sbjct: 31759 gcagtgcctgccttgctgaa 31740
>emb|BX000453.8| Zebrafish DNA sequence from clone DKEY-157G7 in linkage group 7, complete sequence Length = 163585 Score = 40.1 bits (20), Expect = 8.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 26 ttaaaacattatactgtattgctc 49 ||||||||||||||| |||||||| Sbjct: 69138 ttaaaacattatactatattgctc 69161
>emb|CT009699.13| Mouse DNA sequence from clone RP23-119C14 on chromosome 9, complete sequence Length = 192913 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 aatgaaccagagcctgaaaa 623 |||||||||||||||||||| Sbjct: 178070 aatgaaccagagcctgaaaa 178089
>gb|AC159884.2| Mus musculus BAC clone RP24-416O24 from chromosome 9, complete sequence Length = 219361 Score = 40.1 bits (20), Expect = 8.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 604 aatgaaccagagcctgaaaa 623 |||||||||||||||||||| Sbjct: 165746 aatgaaccagagcctgaaaa 165765 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,229,633 Number of Sequences: 3902068 Number of extensions: 5229633 Number of successful extensions: 93028 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92930 Number of HSP's gapped (non-prelim): 98 length of query: 648 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 625 effective length of database: 17,143,297,704 effective search space: 10714561065000 effective search space used: 10714561065000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)