Clone Information

BLAST Search Result

Clone Name	rbags39f05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)	229	4e-60
2	RS3A_HELAN (P49198) 40S ribosomal protein S3a	209	3e-54
3	RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)	206	3e-53
4	RS3A_ARATH (Q42262) 40S ribosomal protein S3a	199	4e-51
5	RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific ...	190	2e-48
6	RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)	155	6e-38
7	RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a	155	6e-38
8	RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a	155	7e-38
9	RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformat...	154	1e-37
10	RS3A_XENTR (Q642T2) 40S ribosomal protein S3a	154	2e-37
11	RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a	154	2e-37
12	RS3A_XENLA (Q801S3) 40S ribosomal protein S3a	153	4e-37
13	RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)	153	4e-37
14	RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a	152	5e-37
15	RS3A_HUMAN (P61247) 40S ribosomal protein S3a	152	5e-37
16	RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a	152	5e-37
17	RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)	152	5e-37
18	RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformatio...	152	6e-37
19	RS3A_MOUSE (P97351) 40S ribosomal protein S3a	152	6e-37
20	RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a	151	1e-36
21	RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a	151	1e-36
22	RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)	150	2e-36
23	RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich prote...	149	4e-36
24	RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)	144	2e-34
25	RS3A_CAEEL (P48154) 40S ribosomal protein S3a	133	3e-31
26	RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)	129	7e-30
27	RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)	128	1e-29
28	RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)	128	1e-29
29	RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)	121	1e-27
30	RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae	55	2e-07
31	RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae	53	5e-07
32	RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae	53	7e-07
33	RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae	52	9e-07
34	RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae	49	7e-06
35	RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae	45	1e-04
36	RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae	45	1e-04
37	RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae	45	1e-04
38	RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae	44	3e-04
39	RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae	44	3e-04
40	RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae	42	0.002
41	RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae	41	0.003
42	RS3A_AERPE (Q9YCV8) 30S ribosomal protein S3Ae	41	0.003
43	RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae	40	0.003
44	RS3A_METTH (O27630) 30S ribosomal protein S3Ae	40	0.004
45	RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae	37	0.029
46	RS3A_METJA (P54059) 30S ribosomal protein S3Ae	35	0.11
47	RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae	31	2.7
48	IF2M_HUMAN (P46199) Translation initiation factor IF-2, mitochon...	30	3.6
49	RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae	30	3.6
50	RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2...	30	6.1
51	RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2...	30	6.1
52	COBQ_VIBPA (Q87HN1) Cobyric acid synthase	29	7.9
53	PGK_MYCMS (P62415) Phosphoglycerate kinase (EC 2.7.2.3)	29	7.9

>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 261

 Score =  229 bits (584), Expect = 4e-60
 Identities = 118/135 (87%), Positives = 125/135 (92%), Gaps = 1/135 (0%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD YMLR+F IGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIM NQA+SCDLKELV+KF
Sbjct: 128 TTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKF 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPD 204
           IPEVIGKEIEKATSSIFPLQNV+VRKVKILKAPKFDLGKLMEVHGDY KED+G KLDRP 
Sbjct: 188 IPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPA 247

Query: 203 GDEVIPGAEEVAAAE 159
            DE + G +EVAAAE
Sbjct: 248 EDEAMAG-QEVAAAE 261

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>RS3A_HELAN (P49198) 40S ribosomal protein S3a|
          Length = 259

 Score =  209 bits (533), Expect = 3e-54
 Identities = 105/133 (78%), Positives = 116/133 (87%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTDN+ LRMF IGFTK+R NQVKRTCYAQ+SQI+QIRRKM EIMV QA +CDLKELV KF
Sbjct: 128 TTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKF 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDG 201
           IPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFD+GKLMEVHGDY EDVGVKLDRP  
Sbjct: 188 IPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRP-A 246

Query: 200 DEVIPGAEEVAAA 162
           +E  P A EV  A
Sbjct: 247 EEAAPEATEVIGA 259

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>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)|
          Length = 259

 Score =  206 bits (525), Expect = 3e-53
 Identities = 102/132 (77%), Positives = 113/132 (85%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD+Y LRMF IGFTK+R NQ KRTCYAQ+SQIRQIRRKM EIMVNQA SCDLK+LV KF
Sbjct: 128 TTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKF 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDG 201
           IPE IG+EIEKATSSI+PLQNV++RKVKILKAPKFDLGKLMEVHGDY ED+G KLDRP  
Sbjct: 188 IPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLDRPAE 247

Query: 200 DEVIPGAEEVAA 165
           + V    E + A
Sbjct: 248 EAVAEPTEVIGA 259

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>RS3A_ARATH (Q42262) 40S ribosomal protein S3a|
          Length = 261

 Score =  199 bits (506), Expect = 4e-51
 Identities = 100/134 (74%), Positives = 112/134 (83%), Gaps = 1/134 (0%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y LRMF I FTKRR NQVKRTCYAQ+SQIRQIRRKM EIMV +A+SCDLKELV KF
Sbjct: 128 TTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKF 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRPD 204
           IPE IG+EIEKAT  I+PLQNV++RKVKILKAPKFDLGKLMEVHGDY  EDVGVK+DRP 
Sbjct: 188 IPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPA 247

Query: 203 GDEVIPGAEEVAAA 162
            + ++    E+  A
Sbjct: 248 DETMVEEPTEIIGA 261

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>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein|
           BIS289)
          Length = 261

 Score =  190 bits (483), Expect = 2e-48
 Identities = 100/135 (74%), Positives = 112/135 (82%), Gaps = 2/135 (1%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQ-AASCDLKELVNK 384
           TTDNY LR+F I FTKRR NQVKRTCYAQ+SQIRQIR KM EIM+ + A+SCDLKELV K
Sbjct: 128 TTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAK 187

Query: 383 FIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDY-KEDVGVKLDRP 207
           FIPE IGK+IEKAT  I+PLQNV++RKVKILKAPKFDL KLMEVHGDY  EDVGVK+DRP
Sbjct: 188 FIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRP 247

Query: 206 DGDEVIPGAEEVAAA 162
             DEV+    E+  A
Sbjct: 248 -ADEVVEEPTEIIGA 261

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>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)|
          Length = 251

 Score =  155 bits (393), Expect = 6e-38
 Identities = 76/115 (66%), Positives = 95/115 (82%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+ R+F IGFT+RR NQVK+T YAQ+SQIR IR+KM +++ NQ +SC ++ELV K 
Sbjct: 128 TTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 216
           IPEVIG+EIE+AT SIFPLQNV VRKVKILKAPK D  KL+E+HG+  +DVG K+
Sbjct: 188 IPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241

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>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a|
          Length = 265

 Score =  155 bits (393), Expect = 6e-38
 Identities = 76/131 (58%), Positives = 99/131 (75%), Gaps = 9/131 (6%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTKRR NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKRRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDV 228
           IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+           +D 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKATGDDT 247

Query: 227 GVKLDRPDGDE 195
           G K++R DG E
Sbjct: 248 GAKVERADGYE 258

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>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a|
          Length = 263

 Score =  155 bits (392), Expect = 7e-38
 Identities = 75/129 (58%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KMVEIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMVEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 222
           IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector|
           protein)
          Length = 265

 Score =  154 bits (390), Expect = 1e-37
 Identities = 75/131 (57%), Positives = 99/131 (75%), Gaps = 9/131 (6%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQV++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQVRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD---------YKEDV 228
           IP+ +GK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+           +D 
Sbjct: 188 IPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKASGDDT 247

Query: 227 GVKLDRPDGDE 195
           G K++R DG E
Sbjct: 248 GAKVERADGYE 258

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>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a|
          Length = 263

 Score =  154 bits (388), Expect = 2e-37
 Identities = 74/129 (57%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 222
           IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a|
          Length = 266

 Score =  154 bits (388), Expect = 2e-37
 Identities = 74/132 (56%), Positives = 99/132 (75%), Gaps = 10/132 (7%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRTNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD----------YKED 231
           IP+ +GK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+           + D
Sbjct: 188 IPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKPAEGD 247

Query: 230 VGVKLDRPDGDE 195
            G K++R DG E
Sbjct: 248 TGAKVERADGYE 259

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>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a|
          Length = 263

 Score =  153 bits (386), Expect = 4e-37
 Identities = 74/129 (57%), Positives = 98/129 (75%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMFEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 222
           IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)|
          Length = 263

 Score =  153 bits (386), Expect = 4e-37
 Identities = 74/129 (57%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTGEFQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 222
           IP+ IGK+IEKA  SI+PL +VYVRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGDEAGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a|
          Length = 263

 Score =  152 bits (385), Expect = 5e-37
 Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 222
           IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_HUMAN (P61247) 40S ribosomal protein S3a|
          Length = 263

 Score =  152 bits (385), Expect = 5e-37
 Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 222
           IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a|
          Length = 263

 Score =  152 bits (385), Expect = 5e-37
 Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 222
           IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)|
          Length = 260

 Score =  152 bits (385), Expect = 5e-37
 Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 125 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 184

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 222
           IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 185 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 244

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 245 KVERADGYE 253

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>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector|
           protein) [Contains: 40S ribosomal protein S3b]
          Length = 263

 Score =  152 bits (384), Expect = 6e-37
 Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 222
           IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_MOUSE (P97351) 40S ribosomal protein S3a|
          Length = 263

 Score =  152 bits (384), Expect = 6e-37
 Identities = 73/129 (56%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-------YKEDVGV 222
           IP+ IGK+IEKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a|
          Length = 247

 Score =  151 bits (382), Expect = 1e-36
 Identities = 80/116 (68%), Positives = 94/116 (81%), Gaps = 1/116 (0%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTDNY +R+F I FTK+RPN   R  YAQ+SQI  IRRKM EIMV +A +CDLKELV KF
Sbjct: 127 TTDNYQIRIFCIAFTKKRPNHT-RNFYAQSSQIA-IRRKMREIMVKEAQTCDLKELVAKF 184

Query: 380 IPEVIGKEIEKATSS-IFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 216
           IPEVIGKEI++  S  I+PLQ+ ++RKVKILKAPKFDL KLMEVHGDY E+VG K+
Sbjct: 185 IPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240

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>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a|
          Length = 263

 Score =  151 bits (382), Expect = 1e-36
 Identities = 72/129 (55%), Positives = 99/129 (76%), Gaps = 7/129 (5%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+F +GFTK+R NQ+++T YAQ  Q+RQIR+KM+EIM  +  + DLKE+VNK 
Sbjct: 128 TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYK-------EDVGV 222
           IP+ IGK++EKA  SI+PL +V+VRKVK+LK PKF+LGKLME+HG+         ++ G 
Sbjct: 188 IPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDETGA 247

Query: 221 KLDRPDGDE 195
           K++R DG E
Sbjct: 248 KVERADGYE 256

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>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)|
          Length = 251

 Score =  150 bits (379), Expect = 2e-36
 Identities = 74/115 (64%), Positives = 93/115 (80%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+ R+F IGFT RR NQVK+T YAQ+SQIR I +KM +++ NQA  C +KELV K 
Sbjct: 128 TTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVIQNQANGCSMKELVQKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 216
           IPEVIG+ IEKAT++I+PLQNV+VRKVKILKAPK D  KL+E+HG+  +DVG K+
Sbjct: 188 IPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241

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>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)|
          Length = 264

 Score =  149 bits (377), Expect = 4e-36
 Identities = 73/130 (56%), Positives = 98/130 (75%), Gaps = 8/130 (6%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y+LR+FAIGFTK+R NQVK+TCYAQ +Q++ IR+KMVEI+  + +S D+KE+VNK 
Sbjct: 128 TTDGYLLRVFAIGFTKKRNNQVKKTCYAQHAQVKAIRKKMVEIVSREVSSNDMKEVVNKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVG 225
           IP+ IGK+IEK+   I+PL +V + KVK+LK PKFD+GKLME+HG+           + G
Sbjct: 188 IPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVTSEGG 247

Query: 224 VKLDRPDGDE 195
            K+DR DG E
Sbjct: 248 EKVDRVDGYE 257

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>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)|
          Length = 255

 Score =  144 bits (362), Expect = 2e-34
 Identities = 68/125 (54%), Positives = 98/125 (78%), Gaps = 1/125 (0%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T+D+Y+LR+FAI FTKR+PNQ+K T YAQ+S++R+ R+KM+EI+  + ++C L +L +K 
Sbjct: 128 TSDDYVLRVFAIAFTKRQPNQIKETTYAQSSKLREARKKMIEIIEREVSNCTLAQLTSKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLDRPD 204
           IPEVIG+EIEK+T +IFPLQNV++RKVK+LK PKFD G L+ +HG+   E+ G K+    
Sbjct: 188 IPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVSSGF 247

Query: 203 GDEVI 189
            D V+
Sbjct: 248 KDVVL 252

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>RS3A_CAEEL (P48154) 40S ribosomal protein S3a|
          Length = 256

 Score =  133 bits (335), Expect = 3e-31
 Identities = 66/124 (53%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD Y LR+F I FTK+  NQVK+T Y + S+IR+IR +M+  +  +   CDLKE+V+K 
Sbjct: 126 TTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGCIEKEVTGCDLKEVVSKL 185

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--YKEDVGVKLDRP 207
           IP+ IGK+IEK  S ++PLQ VY+RKVKI+K PK DLG+L ++HGD       G K+DRP
Sbjct: 186 IPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEKVDRP 245

Query: 206 DGDE 195
           D  E
Sbjct: 246 DDYE 249

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>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)|
          Length = 267

 Score =  129 bits (323), Expect = 7e-30
 Identities = 61/130 (46%), Positives = 87/130 (66%), Gaps = 8/130 (6%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y+LR+F IGFT +     ++TCYAQ SQ+R+IR +M +I+ N+ +  DLK+LVNK 
Sbjct: 131 TVDGYLLRVFCIGFTAKDQQSQRKTCYAQQSQVRKIRARMTDIITNEVSGADLKQLVNKL 190

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD--------YKEDVG 225
             + I K+IEK+   I+PL +VY+RKVK+LK P+FD+ KL+E+HGD             G
Sbjct: 191 ALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVVSSEG 250

Query: 224 VKLDRPDGDE 195
             +DRP+G E
Sbjct: 251 AVIDRPEGYE 260

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>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)|
          Length = 254

 Score =  128 bits (322), Expect = 1e-29
 Identities = 61/106 (57%), Positives = 82/106 (77%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T+D+Y+LR+FAI FT+++ NQVKR  YAQ+S IR IR+ + EI+  +  +  L +L +K 
Sbjct: 128 TSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTREVQNSTLAQLTSKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 243
           IPEVI KEIE AT  IFPLQN++VRKVK+LK PKFD+G LM +HG+
Sbjct: 188 IPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233

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>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)|
          Length = 254

 Score =  128 bits (321), Expect = 1e-29
 Identities = 61/106 (57%), Positives = 81/106 (76%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T+D+Y+LR+FAI FT+++ NQVKR  YAQ+S IR IR+ + EI+  +     L +L +K 
Sbjct: 128 TSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRKVISEILTKEVQGSTLAQLTSKL 187

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 243
           IPEVI KEIE AT  IFPLQN++VRKVK+LK PKFD+G LM +HG+
Sbjct: 188 IPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233

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>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)|
          Length = 268

 Score =  121 bits (304), Expect = 1e-27
 Identities = 57/106 (53%), Positives = 76/106 (71%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD +MLR+F IGFT +     ++TCYAQ SQI+ IR KM  I+  +  S DLK +V K 
Sbjct: 131 TTDGFMLRVFCIGFTIKDSMSQRKTCYAQHSQIKNIRAKMTAIIKREITSTDLKGVVEKL 190

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGD 243
           +P+ I K+IEKA   ++PL +VY+RKVK+LK P+FDL  LME+HGD
Sbjct: 191 LPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236

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>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae|
          Length = 198

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 32/94 (34%), Positives = 48/94 (51%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y LR+ A+    RR          Q SQ R IR+ M EI+  +A   + K+ V + 
Sbjct: 111 TKDGYKLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLES 161

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 279
           +   I  EI K    I+PL+   +RK+K+L+ P+
Sbjct: 162 VNGKIAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195

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>RS3A_METKA (Q8TVD1) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 53.1 bits (126), Expect = 5e-07
 Identities = 29/97 (29%), Positives = 52/97 (53%), Gaps = 4/97 (4%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y +R+  + FT RR         A+ SQ R IR++M +++   A  CD  E + + 
Sbjct: 104 TKDGYKVRVAGLAFTTRR---------AKTSQQRAIRKEMFKVIEENAKECDFDEFIRRC 154

Query: 380 IP----EVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +     E I ++I++A   I+P++   +RK ++L+ P
Sbjct: 155 LSISEEESIPEQIKEAGRKIYPIRQAEIRKTEVLEEP 191

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>RS3A_PYRHO (O57803) 30S ribosomal protein S3Ae|
          Length = 199

 Score = 52.8 bits (125), Expect = 7e-07
 Identities = 32/94 (34%), Positives = 47/94 (50%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y LR+ A+    RR          Q SQ R IR+ M EI+  +A   + K+ V + 
Sbjct: 113 TKDGYRLRVMAMAIAMRR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEA 163

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 279
           +   I  EI K    I+PL+   +RK+K+L  P+
Sbjct: 164 VNGKIAAEIAKEGKKIYPLKKAEIRKIKVLGEPE 197

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>RS3A_PYRAB (Q9V2K7) 30S ribosomal protein S3Ae|
          Length = 199

 Score = 52.4 bits (124), Expect = 9e-07
 Identities = 32/94 (34%), Positives = 47/94 (50%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y LR+ A+    RR          Q SQ R IR+ M EI+  +A   + K+ V + 
Sbjct: 112 TKDGYKLRVMAMVIAARR---------IQTSQERAIRKIMQEIIYKKAEELNFKDFVLEA 162

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 279
           +   I  EI K    I+PL+   +RK+K+L  P+
Sbjct: 163 VNGKIAAEIAKEAKKIYPLKKAEIRKIKVLGEPE 196

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>RS3A_ARCFU (O27964) 30S ribosomal protein S3Ae|
          Length = 211

 Score = 49.3 bits (116), Expect = 7e-06
 Identities = 29/93 (31%), Positives = 50/93 (53%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y LR+ ++ FT RR          + SQ R IR  M +I+V +A+S +  + + + 
Sbjct: 114 TADGYKLRVKSVVFTVRR---------CKTSQKRAIRAIMRQIVVEKASSLNFVQFLQEC 164

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +   +  EI K    I+P++ V +RK+++L  P
Sbjct: 165 VLGKVPAEIYKNAKKIYPIRRVEIRKIELLAEP 197

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>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae|
          Length = 197

 Score = 45.4 bits (106), Expect = 1e-04
 Identities = 30/94 (31%), Positives = 44/94 (46%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D YMLR+  +  T  R         A  SQ   IR+ + +I   +A   D  + V   
Sbjct: 112 TKDGYMLRVKGLVLTTYR---------AHISQKTAIRKVISDITRKKAEESDFDQFVQDV 162

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 279
           I   +  +I +    I+PL+ V + K K+LKAPK
Sbjct: 163 IFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196

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>RS3A_METAC (Q8TKI9) 30S ribosomal protein S3Ae|
          Length = 203

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 28/93 (30%), Positives = 48/93 (51%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y++R+    FT +R         A++SQ++ IR  MVEI+  +AA  D +  + + 
Sbjct: 111 TKDGYVIRVKPTCFTIKR---------ARSSQMQAIREMMVEIVKKRAAESDFETFMQEA 161

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           I   +   I +    I+PL+ V +RK ++   P
Sbjct: 162 ILGRLSAAIYRQAKFIYPLRRVEIRKTEVETIP 194

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>RS3A_PYRKO (Q5JGM4) 30S ribosomal protein S3Ae|
          Length = 200

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 28/93 (30%), Positives = 44/93 (47%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y LR+  +    RR          Q SQ R IR+ + +I+  +A   +  + V + 
Sbjct: 115 TKDGYKLRVMGMVIAYRR---------IQTSQERAIRKIIQDIIYKKAEELNFADFVLQS 165

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +   I  EI K    I+P++   VRK+K+L  P
Sbjct: 166 VNGQIASEIAKEARKIYPIKRAEVRKIKVLAEP 198

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>RS3A_SULTO (Q975F8) 30S ribosomal protein S3Ae|
          Length = 193

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 28/93 (30%), Positives = 44/93 (47%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y+LR+  +  T  R         A  SQ  +IR+ +  I+  +A+     E V   
Sbjct: 109 TKDGYVLRVKGLALTTYR---------AHRSQKTEIRKIIWNILSTRASETTFDEFVQDI 159

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +   +  +I +    I+PL+ V V K K+LKAP
Sbjct: 160 VFGKLSNDIFQQAKKIYPLRKVEVEKTKLLKAP 192

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>RS3A_PYRAE (Q8ZT21) 30S ribosomal protein S3Ae|
          Length = 221

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 22/93 (23%), Positives = 46/93 (49%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D  ++R+  +G T  R    +++          +R+KM+E +V +AA  D  + + + 
Sbjct: 120 TKDGMVMRIAVLGITTHRIGTAQKSA---------MRKKMIETLVKKAAELDSGQFLKEI 170

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +   +  ++      I P++ V + K+K+LK P
Sbjct: 171 LEGTLAADLFIVAKKIAPMRKVEIAKIKVLKYP 203

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>RS3A_METMA (Q8Q0F2) 30S ribosomal protein S3Ae|
          Length = 204

 Score = 41.6 bits (96), Expect = 0.002
 Identities = 23/77 (29%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
 Frame = -3

Query: 500 QVKRTCY----AQASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSI 333
           +VK TC+    A++SQ++ IR  MV+I+  +A+  D +  + + I   +   I +    I
Sbjct: 118 RVKPTCFTIKRARSSQMQAIREMMVDIVKKRASETDFETFMQEAILGRLSAAIYRQAKFI 177

Query: 332 FPLQNVYVRKVKILKAP 282
           +PL+ V +RK ++   P
Sbjct: 178 YPLRRVEIRKTQVEAMP 194

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>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae|
          Length = 208

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 26/102 (25%), Positives = 51/102 (50%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y++R+  +  T  + +Q ++T          IR+ + E +  +A+     +   + 
Sbjct: 110 TKDGYVVRVKGLVLTTYKCHQSQKTA---------IRKIINETVSKKASELSFDDFTQEV 160

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLME 255
           +   +  EI +A   I+PL+   + K K+LK P+ +LGK +E
Sbjct: 161 VFGRLANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201

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>RS3A_AERPE (Q9YCV8) 30S ribosomal protein S3Ae|
          Length = 221

 Score = 40.8 bits (94), Expect = 0.003
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y LR+ A+ FT++R          + SQ   IR+ M EI+  +A    L EL+   
Sbjct: 115 TKDGYGLRVTAMAFTRQR---------CKTSQKSAIRKVMQEIVEQKARESTLDELIQLM 165

Query: 380 I----PEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +       +   I+++   I+PL+ V + K K+L  P
Sbjct: 166 VFSDHEGSLAYLIDESARKIYPLRKVEIAKSKLLWVP 202

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>RS3A_HALMA (Q5V296) 30S ribosomal protein S3Ae|
          Length = 213

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 29/121 (23%), Positives = 56/121 (46%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           TTD+Y +++  +  T ++         A ASQ + IRR M++++   A     ++L++  
Sbjct: 108 TTDDYRVQIQPVAVTTKK---------ADASQEKAIRRTMIDLVRETAEDHTFEQLIDSV 158

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKLDRPDG 201
           +   +   I      I+PL+ V ++K  +   P+       EV  +  E+  V +D  D 
Sbjct: 159 VEGRLSSAIYGEAKDIYPLRRVEIKKTTLEARPE-------EVAAE--EETAVDVDEEDV 209

Query: 200 D 198
           D
Sbjct: 210 D 210

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>RS3A_METTH (O27630) 30S ribosomal protein S3Ae|
          Length = 195

 Score = 40.0 bits (92), Expect = 0.004
 Identities = 26/93 (27%), Positives = 45/93 (48%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D Y L++  +  T RR         A++SQ + +R+ + E +   A+    +ELV   
Sbjct: 111 TKDGYKLKVHPLAITIRR---------AKSSQQKYMRQSIEEHLREIASEKTFEELVEGI 161

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAP 282
           +   I  EI      I+PL+ V + K ++L+ P
Sbjct: 162 VTGKIASEIYHQAKKIYPLKRVEIIKSRVLEEP 194

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>RS3A_THEVO (Q978Z2) 30S ribosomal protein S3Ae|
          Length = 215

 Score = 37.4 bits (85), Expect = 0.029
 Identities = 25/104 (24%), Positives = 49/104 (47%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T+DN ++ +  +  T  +    K+          QIR+ + + ++N+  S    E V   
Sbjct: 112 TSDNSIITVKIVVVTDGKVTNTKKF---------QIRKVLTDFILNKGLSLPYSEFVRYL 162

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVH 249
           I + I  ++  AT  I+PL+ + VRK +++      L  + E+H
Sbjct: 163 IGDDIYNDMISATKDIYPLKKIEVRKSELV-----SLSGISEIH 201

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>RS3A_METJA (P54059) 30S ribosomal protein S3Ae|
          Length = 222

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 24/94 (25%), Positives = 43/94 (45%)
 Frame = -3

Query: 560 TTDNYMLRMFAIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNKF 381
           T D + +R  A+  T  R N  +++          IR+KM EI+   A      + V   
Sbjct: 118 TQDGHKIRTKAMVLTAYRANTKQKS---------DIRKKMEEIIKAMAKEKTFPQYVQAM 168

Query: 380 IPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 279
           +   + ++I+     IFP++NV + K ++L   K
Sbjct: 169 LFGEMAEKIKNECKKIFPIKNVIIYKSEVLSLAK 202

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>RS3A_THEAC (Q9HJ08) 30S ribosomal protein S3Ae|
          Length = 215

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 20/97 (20%), Positives = 43/97 (44%)
 Frame = -3

Query: 458 QIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKILKAPK 279
           +IR+ +   +V++ +     + V   I +    ++ +AT +I+PL+ + +RK        
Sbjct: 137 EIRKALTSFIVSKGSQLSYADFVRYLIGDDSYNDMVEATKNIYPLRKIEIRK-------- 188

Query: 278 FDLGKLMEVHGDYKEDVGVKLDRPDGDEVIPGAEEVA 168
               +L+ + G         +  P  +E  PG E +A
Sbjct: 189 ---SELVSLSG---------MQEPQKNEPAPGGEAIA 213

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>IF2M_HUMAN (P46199) Translation initiation factor IF-2, mitochondrial|
           precursor (IF-2Mt) (IF-2(Mt))
          Length = 727

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
 Frame = +1

Query: 1   TRTKKIVERWLGMSTEVLKKSAIK-TDY 81
           T++KK+VE W+GM+ E L ++  K TDY
Sbjct: 85  TKSKKVVEVWIGMTIEELARAMEKNTDY 112

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>RS3A_PICTO (Q6KYU3) 30S ribosomal protein S3Ae|
          Length = 209

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/61 (21%), Positives = 32/61 (52%)
 Frame = -3

Query: 473 ASQIRQIRRKMVEIMVNQAASCDLKELVNKFIPEVIGKEIEKATSSIFPLQNVYVRKVKI 294
           A++  ++R K++  +  +  S  L EL    I + +  +I      ++P++ + +RK ++
Sbjct: 131 ANKRGEVRSKIIGFINERCGSMTLPELAQYIIGDNVYNDIVDTLKDVYPIKKIEIRKSEV 190

Query: 293 L 291
           L
Sbjct: 191 L 191

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>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1181

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -3

Query: 371  VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 195
            ++GK   K  + + P + + +R +   KA +     L   HG+  + +GV++ DR +GDE
Sbjct: 808  LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866

Query: 194  VIPGAEEV 171
            + PG  ++
Sbjct: 867  LPPGVNQL 874

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>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
           beta subunit) (Transcriptase beta chain) (RNA polymerase
           beta subunit)
          Length = 1161

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -3

Query: 371 VIGKEIEKATSSIFPLQNVYVRKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 195
           ++GK   K  + + P + + +R +   KA +     L   HG+  + +GV++ DR +GDE
Sbjct: 788 LVGKVTPKGETELTPEERL-LRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846

Query: 194 VIPGAEEV 171
           + PG  ++
Sbjct: 847 LPPGVNQL 854

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>COBQ_VIBPA (Q87HN1) Cobyric acid synthase|
          Length = 483

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
 Frame = -3

Query: 365 GKEIEKATSSIFPLQNVYVRKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 213
           G++I+KA   I P        +  LK+  +D          GK+M + G Y+  +G  +D
Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344

Query: 212 RPDGDEVIPGAEE 174
            PDG E  PG+ E
Sbjct: 345 DPDGVEGEPGSSE 357

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>PGK_MYCMS (P62415) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 404

 Score = 29.3 bits (64), Expect = 7.9
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = -3

Query: 503 NQVKRTCYAQASQIRQIRRKMVEIMVNQAASCDLKELVNK---FIPEVIGKEIEKATSSI 333
           N  K   ++  S+I+    K+ + +   A    L+EL+NK   FI +  G+E+EKA SS+
Sbjct: 53  NDAKIVLFSHLSRIKSKEDKLKKSLAPVAKR--LEELLNKQVKFINQTRGQELEKAISSL 110

Query: 332 FPLQNVYVRKVK 297
              + + V   +
Sbjct: 111 QSKEIILVENTR 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,595,807
Number of Sequences: 219361
Number of extensions: 1243851
Number of successful extensions: 3425
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3419
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result