>TLP40_SPIOL (O49939) Peptidyl-prolyl cis-trans isomerase, chloroplast precursor|
           (EC 5.2.1.8) (40 kDa thylakoid lumen PPIase) (40 kDa
           thylakoid lumen rotamase)
          Length = 449

 Score =  105 bits (262), Expect = 3e-23
 Identities = 48/59 (81%), Positives = 57/59 (96%)
 Frame = -1

Query: 258 KSELTPSNSNILDGRYSVFGYVTENEDFLADLKVGDVIESIQVVSGLDNLVNPSYKIVG 82
           +SELTPSN+NILDGRY+VFGYVT+N+D+LADLKVGDVIES+Q VSG+DNLVNP+YKI G
Sbjct: 391 ESELTPSNANILDGRYAVFGYVTDNQDYLADLKVGDVIESVQAVSGVDNLVNPTYKIAG 449

>PPI1_SYNY3 (P72704) Probable peptidyl-prolyl cis-trans isomerase sll0227|
           precursor (EC 5.2.1.8) (PPIase) (Rotamase)
          Length = 246

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 20/42 (47%), Positives = 30/42 (71%)
 Frame = -1

Query: 234 SNILDGRYSVFGYVTENEDFLADLKVGDVIESIQVVSGLDNL 109
           +  LDG Y+VFGYVT+  D +  +K GD I+S +V++G +NL
Sbjct: 203 TGFLDGDYAVFGYVTQGMDVVLKIKQGDKIQSAKVITGQNNL 244

>CYP37_ARATH (P82869) Peptidyl-prolyl cis-trans isomerase CYP37, chloroplast|
           precursor (EC 5.2.1.8) (PPIase CYP37) (Rotamase CYP37)
           (Thylakoid lumen PPIase of 38 kDa) (p38) (TLP38)
          Length = 461

 Score = 42.7 bits (99), Expect = 2e-04
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -1

Query: 222 DGRYSVFGYVTENEDFLADLKVGDVIESIQVVSGLDNLVNP 100
           +G++SVFGY    +D L  +K GD+I+S +++ G D L  P
Sbjct: 411 EGQFSVFGYTIAGKDILGQIKTGDIIKSAKLIEGQDRLSLP 451

>PPIA_HELPY (O25982) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase)|
           (Rotamase)
          Length = 163

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 225 LDGRYSVFGYVTENE--DFLADLKVGDVIESIQVVSGL 118
           LDG ++VFG +T  E    L  +K GD+IES+   S L
Sbjct: 126 LDGEHTVFGKITSAEGLSVLDKIKQGDIIESVVFSSSL 163

>PPIB_TREPA (O66105) Probable peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 215

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 225 LDGRYSVFGYVTENEDFLADLKVGDVIESIQVV 127
           LDG+++VFG V E  + +  +  GD I S+++V
Sbjct: 155 LDGKHTVFGKVVEGMEVVHAIIAGDTIRSLKIV 187

>PPIA_HELPJ (Q9ZJH5) Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8) (PPIase)|
           (Rotamase)
          Length = 162

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -1

Query: 225 LDGRYSVFGYVTENEDF--LADLKVGDVIESI 136
           LDG ++VFG +T  E    L  +K GD+IES+
Sbjct: 125 LDGEHTVFGKITSAESLSVLDKIKQGDIIESV 156

>PPIB_BACSU (P35137) Peptidyl-prolyl cis-trans isomerase B (EC 5.2.1.8) (PPIase|
           B) (Rotamase B)
          Length = 143

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -1

Query: 225 LDGRYSVFGYVTENEDFLADLKVGDVIESIQV 130
           L+G ++VFG VT   +F  ++  GDV++ ++V
Sbjct: 110 LNGVHTVFGKVTSGLEFAKNMSNGDVMKEVRV 141

>RSMB_PHOLL (Q7MYI0) Ribosomal RNA small subunit methyltransferase B (EC|
           2.1.1.-) (rRNA (cytosine-C(5)-)-methyltransferase) (16S
           rRNA m5C967 methyltransferase)
          Length = 429

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +3

Query: 6   IXHKTSVLIP*NNCMSRNSYIRKHATLQSCSSG*QDCLG 122
           + + T  ++P  NC   +S++++H+  +   +   DCLG
Sbjct: 370 LVYATCSILPDENCQQISSFLKRHSDAKLAGTETNDCLG 408

>PER71_ARATH (Q43387) Peroxidase 71 precursor (EC 1.11.1.7) (Atperox P71)|
           (ATP15a) (ATPO2)
          Length = 328

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
 Frame = +2

Query: 71  ETCYPTIL*LGLTRLSRPETTWIDSITSPTLRS--AKKSSFSVTYPNTEYRPSNILELLG 244
           +T Y   L  G   L   +  W D  T P ++   A +S+F+V +  +  R SNI  + G
Sbjct: 256 DTSYYNNLSRGRGVLQSDQVLWTDPATRPIVQQLMAPRSTFNVEFARSMVRMSNIGVVTG 315

Query: 245 VN 250
            N
Sbjct: 316 AN 317

>ASPQ_ACIGL (P10172) Glutaminase-asparaginase (EC 3.5.1.38)|
           (L-asparagine/L-glutamine amidohydrolase)
           (L-ASNase/L-GLNase)
          Length = 331

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = -1

Query: 192 TENEDFLADLKVGDVIESIQVVSGLDNLVNPSYK 91
           T N +F  +   GD +  +Q+V G DN++  +Y+
Sbjct: 200 TNNSEFNIEKIQGDALPGVQIVYGSDNMMPDAYQ 233

>GLMU_XANOR (Q5H4Y0) Bifunctional protein glmU [Includes:|
           UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23)
           (N-acetylglucosamine-1-phosphate uridyltransferase);
           Glucosamine-1-phosphate N-acetyltransferase (EC
           2.3.1.157)]
          Length = 454

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
 Frame = -1

Query: 174 LAD-LKVGDVIESIQVVSGLDNLVNP----SYKIVG*HVSVYKNSLTCNYFTVLK 25
           LAD + +G+ +E+ +V  G+D+  N        ++G  V++   ++TCNY  V K
Sbjct: 337 LADGVHIGNFVETKKVTMGVDSKANHLTYLGDAVIGSKVNIGAGTITCNYDGVNK 391


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,170,042
Number of Sequences: 219361
Number of extensions: 590675
Number of successful extensions: 1753
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1752
length of database: 80,573,946
effective HSP length: 61
effective length of database: 67,192,925
effective search space used: 1612630200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)