ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_482125.1| Oryza sativa (japonica cultivar-group), mRNA 121 1e-24
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
3dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
4dbj|AK099874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
5dbj|AK058264.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
6dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
7dbj|AK060624.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 4e-12
8gb|AC024094.28| Homo sapiens 4 RP11-193M13 (Roswell Park Cancer ... 40 3.3
9gb|AF030709.1|AF030709 Pisum sativum poly(A) polymerase mRNA, nu... 40 3.3
10emb|AL593847.36| Mouse DNA sequence from clone RP23-170A23 on ch... 40 3.3 
>ref|XM_482125.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1522

 Score =  121 bits (61), Expect = 1e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 83   cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
            ||||||||||| ||||| |||||| | || ||||||| |||||||||||| || || |||
Sbjct: 1348 cctacaatcttatagcttgggttggcgaggttgtctaagcctgagacaacttgaatcgat 1289

                                                                        
Query: 143  tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
            ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 1288 tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 1229

                                                     
Query: 203  aacaccgaataccgcccatccaatatattggaattacttgg 243
            || || | |||||||||||||| |||||||| ||| |||||
Sbjct: 1228 aatacggcataccgcccatccagtatattggcattgcttgg 1188
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  121 bits (61), Expect = 1e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                            
Query: 83       cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
                ||||||||||| ||||| |||||| | || ||||||| |||||||||||| || || |||
Sbjct: 18016454 cctacaatcttatagcttgggttggcgaggttgtctaagcctgagacaacttgaatcgat 18016395

                                                                            
Query: 143      tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
                ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 18016394 tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 18016335

                                                         
Query: 203      aacaccgaataccgcccatccaatatattggaattacttgg 243
                || || | |||||||||||||| |||||||| ||| |||||
Sbjct: 18016334 aatacggcataccgcccatccagtatattggcattgcttgg 18016294
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>dbj|AP005489.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBa0013H03
          Length = 152998

 Score =  121 bits (61), Expect = 1e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                          
Query: 83     cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
              ||||||||||| ||||| |||||| | || ||||||| |||||||||||| || || |||
Sbjct: 101489 cctacaatcttatagcttgggttggcgaggttgtctaagcctgagacaacttgaatcgat 101430

                                                                          
Query: 143    tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
              ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 101429 tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 101370

                                                       
Query: 203    aacaccgaataccgcccatccaatatattggaattacttgg 243
              || || | |||||||||||||| |||||||| ||| |||||
Sbjct: 101369 aatacggcataccgcccatccagtatattggcattgcttgg 101329
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>dbj|AK099874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111G22, full
            insert sequence
          Length = 1523

 Score =  121 bits (61), Expect = 1e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                        
Query: 83   cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
            ||||||||||| ||||| |||||| | || ||||||| |||||||||||| || || |||
Sbjct: 1349 cctacaatcttatagcttgggttggcgaggttgtctaagcctgagacaacttgaatcgat 1290

                                                                        
Query: 143  tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
            ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 1289 tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 1230

                                                     
Query: 203  aacaccgaataccgcccatccaatatattggaattacttgg 243
            || || | |||||||||||||| |||||||| ||| |||||
Sbjct: 1229 aatacggcataccgcccatccagtatattggcattgcttgg 1189
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>dbj|AK058264.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-A03, full
           insert sequence
          Length = 434

 Score =  121 bits (61), Expect = 1e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                       
Query: 83  cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
           ||||||||||| ||||| |||||| | || ||||||| |||||||||||| || || |||
Sbjct: 218 cctacaatcttatagcttgggttggcgaggttgtctaagcctgagacaacttgaatcgat 159

                                                                       
Query: 143 tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
           ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 158 tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 99

                                                    
Query: 203 aacaccgaataccgcccatccaatatattggaattacttgg 243
           || || | |||||||||||||| |||||||| ||| |||||
Sbjct: 98  aatacggcataccgcccatccagtatattggcattgcttgg 58
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>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1090H08
          Length = 200720

 Score =  121 bits (61), Expect = 1e-24
 Identities = 136/161 (84%)
 Strand = Plus / Minus

                                                                         
Query: 83    cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
             ||||||||||| ||||| |||||| | || ||||||| |||||||||||| || || |||
Sbjct: 20250 cctacaatcttatagcttgggttggcgaggttgtctaagcctgagacaacttgaatcgat 20191

                                                                         
Query: 143   tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
             ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 20190 tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 20131

                                                      
Query: 203   aacaccgaataccgcccatccaatatattggaattacttgg 243
             || || | |||||||||||||| |||||||| ||| |||||
Sbjct: 20130 aatacggcataccgcccatccagtatattggcattgcttgg 20090
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>dbj|AK060624.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-G03, full
           insert sequence
          Length = 286

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 100/120 (83%)
 Strand = Plus / Minus

                                                                       
Query: 83  cctacaatcttgtagctcgggttgacaagattgtctaggcctgagacaacctggattgat 142
           ||||||||||| ||||| |||||| | || | ||||| |||||||||||| || || |||
Sbjct: 120 cctacaatcttatagcttgggttggcgaggtagtctaagcctgagacaacttgaatcgat 61

                                                                       
Query: 143 tcaataacgtcccccaccttgagatcagccaagaaatcctcattctcggttacgtatcca 202
           ||||| || ||||| |||||||| || |||||| | ||||| |||||||| || ||||||
Sbjct: 60  tcaatgacatccccaaccttgaggtctgccaagtagtcctcgttctcggtgacatatcca 1
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>gb|AC024094.28| Homo sapiens 4 RP11-193M13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 161973

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    ttttaataccgtaaaataattgca 48
             |||||||||| |||||||||||||
Sbjct: 97186 ttttaataccataaaataattgca 97163
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>gb|AF030709.1|AF030709 Pisum sativum poly(A) polymerase mRNA, nuclear gene encoding
            chloroplast protein, complete cds
          Length = 1668

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 80/100 (80%)
 Strand = Plus / Minus

                                                                        
Query: 158  accttgagatcagccaagaaatcctcattctcggttacgtatccaaacaccgaataccgc 217
            ||||| ||||| || |||||||| ||||| || ||||| || ||||| || | ||| |  
Sbjct: 1296 accttaagatctgctaagaaatcttcattttctgttacatagccaaaaacagcatatcta 1237

                                                    
Query: 218  ccatccaatatattggaattacttggcgtcaactcacttt 257
            |||| ||||||||||| ||| || || || ||||||||||
Sbjct: 1236 ccatgcaatatattggcattgctcggagttaactcacttt 1197
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>emb|AL593847.36| Mouse DNA sequence from clone RP23-170A23 on chromosome 11, complete
              sequence
          Length = 222315

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     aaacatgctaccctacaatc 91
              ||||||||||||||||||||
Sbjct: 119069 aaacatgctaccctacaatc 119088


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,593,811
Number of Sequences: 3902068
Number of extensions: 1593811
Number of successful extensions: 23130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23104
Number of HSP's gapped (non-prelim): 26
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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