| Clone Name | rbags39e22 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 183327 Score = 549 bits (277), Expect = e-153 Identities = 433/485 (89%) Strand = Plus / Minus Query: 215 tggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcctcc 274 |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 88845 tggcatatttgctcaacggcagccacaatctgggcaggctgcacgacggtggcatcctcc 88786 Query: 275 aaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgtcg 334 | || || || ||||| |||||||||||||| || |||| |||||||||||| ||||| Sbjct: 88785 agaggcgcagcatacggcgtcggcacatcctgcgacgacaagcacatgatgggtgcgtca 88726 Query: 335 aggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccagtg 394 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| Sbjct: 88725 aggtagtcccagaagttgtcgatgatggccgatctcaagctggcgccgatcccgcccgtg 88666 Query: 395 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtg 454 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct: 88665 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatagagttgcctatggtg 88606 Query: 455 tgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttc 514 ||||| || |||||||| |||||||| ||||| || ||||| ||||| |||||||||||| Sbjct: 88605 tgcaggtcaaatggcttcaacgacctgatgtcgatgacctcgggatcataccctttgttc 88546 Query: 515 accagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggatagtc 574 ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 88545 accagggtcttcgcagcctgcatcacatggtacctcatccgcgagtatgtgaggatggta 88486 Query: 575 acatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctcatca 634 ||||| || || || || |||||||||||||||||||||||||| ||| ||||| || Sbjct: 88485 acatgttctccgggacgcaccatctcagcctcctccaggcatagaacatattcctcgtcg 88426 Query: 635 ggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttctcg 694 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 88425 ggaattttctccttcaggttgtacagaaggacgtgctcgaatagcaccacggggttctcg 88366 Query: 695 ctcct 699 ||||| Sbjct: 88365 ctcct 88361 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 aagcctataccacaatgaacacctcgctaca 135 ||||||||||||||||| | ||||||||||| Sbjct: 88941 aagcctataccacaatggatacctcgctaca 88911
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 549 bits (277), Expect = e-153 Identities = 433/485 (89%) Strand = Plus / Minus Query: 215 tggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcctcc 274 |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 24710156 tggcatatttgctcaacggcagccacaatctgggcaggctgcacgacggtggcatcctcc 24710097 Query: 275 aaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgtcg 334 | || || || ||||| |||||||||||||| || |||| |||||||||||| ||||| Sbjct: 24710096 agaggcgcagcatacggcgtcggcacatcctgcgacgacaagcacatgatgggtgcgtca 24710037 Query: 335 aggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccagtg 394 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| Sbjct: 24710036 aggtagtcccagaagttgtcgatgatggccgatctcaagctggcgccgatcccgcccgtg 24709977 Query: 395 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtg 454 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct: 24709976 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatagagttgcctatggtg 24709917 Query: 455 tgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttc 514 ||||| || |||||||| |||||||| ||||| || ||||| ||||| |||||||||||| Sbjct: 24709916 tgcaggtcaaatggcttcaacgacctgatgtcgatgacctcgggatcataccctttgttc 24709857 Query: 515 accagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggatagtc 574 ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 24709856 accagggtcttcgcagcctgcatcacatggtacctcatccgcgagtatgtgaggatggta 24709797 Query: 575 acatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctcatca 634 ||||| || || || || |||||||||||||||||||||||||| ||| ||||| || Sbjct: 24709796 acatgttctccgggacgcaccatctcagcctcctccaggcatagaacatattcctcgtcg 24709737 Query: 635 ggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttctcg 694 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 24709736 ggaattttctccttcaggttgtacagaaggacgtgctcgaatagcaccacggggttctcg 24709677 Query: 695 ctcct 699 ||||| Sbjct: 24709676 ctcct 24709672 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 aagcctataccacaatgaacacctcgctaca 135 ||||||||||||||||| | ||||||||||| Sbjct: 24710252 aagcctataccacaatggatacctcgctaca 24710222
>dbj|AK103256.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033124A09, full insert sequence Length = 2662 Score = 549 bits (277), Expect = e-153 Identities = 433/485 (89%) Strand = Plus / Minus Query: 215 tggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcctcc 274 |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 2423 tggcatatttgctcaacggcagccacaatctgggcaggctgcacgacggtggcatcctcc 2364 Query: 275 aaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgtcg 334 | || || || ||||| |||||||||||||| || |||| |||||||||||| ||||| Sbjct: 2363 agaggcgcagcatacggcgtcggcacatcctgcgacgacaagcacatgatgggtgcgtca 2304 Query: 335 aggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccagtg 394 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| Sbjct: 2303 aggtagtcccagaagttgtcgatgatggccgatctcaagctggcgccgatcccgcccgtg 2244 Query: 395 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtg 454 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct: 2243 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatagagttgcctatggtg 2184 Query: 455 tgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttc 514 ||||| || |||||||| |||||||| ||||| || ||||| ||||| |||||||||||| Sbjct: 2183 tgcaggtcaaatggcttcaacgacctgatgtcgatgacctcgggatcataccctttgttc 2124 Query: 515 accagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggatagtc 574 ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 2123 accagggtcttcgcagcctgcatcacatggtacctcatccgcgagtatgtgaggatggta 2064 Query: 575 acatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctcatca 634 ||||| || || || || |||||||||||||||||||||||||| ||| ||||| || Sbjct: 2063 acatgttctccgggacgcaccatctcagcctcctccaggcatagaacatattcctcgtcg 2004 Query: 635 ggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttctcg 694 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 2003 ggaattttctccttcaggttgtacagaaggacgtgctcgaatagcaccacggggttctcg 1944 Query: 695 ctcct 699 ||||| Sbjct: 1943 ctcct 1939 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 aagcctataccacaatgaacacctcgctaca 135 ||||||||||||||||| | ||||||||||| Sbjct: 2519 aagcctataccacaatggatacctcgctaca 2489
>dbj|AK069197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008A03, full insert sequence Length = 1178 Score = 549 bits (277), Expect = e-153 Identities = 433/485 (89%) Strand = Plus / Minus Query: 215 tggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcctcc 274 |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 963 tggcatatttgctcaacggcagccacaatctgggcaggctgcacgacggtggcatcctcc 904 Query: 275 aaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgtcg 334 | || || || ||||| |||||||||||||| || |||| |||||||||||| ||||| Sbjct: 903 agaggcgcagcatacggcgtcggcacatcctgcgacgacaagcacatgatgggtgcgtca 844 Query: 335 aggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccagtg 394 |||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||| Sbjct: 843 aggtagtcccagaagttgtcgatgatggccgatctcaagctggcgccgatcccgcccgtg 784 Query: 395 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtg 454 |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| Sbjct: 783 cgcatgcactcctccacaatcagcacgcggtgggtcttcttgatagagttgcctatggtg 724 Query: 455 tgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttc 514 ||||| || |||||||| |||||||| ||||| || ||||| ||||| |||||||||||| Sbjct: 723 tgcaggtcaaatggcttcaacgacctgatgtcgatgacctcgggatcataccctttgttc 664 Query: 515 accagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggatagtc 574 ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || Sbjct: 663 accagggtcttcgcagcctgcatcacatggtacctcatccgcgagtatgtgaggatggta 604 Query: 575 acatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctcatca 634 ||||| || || || || |||||||||||||||||||||||||| ||| ||||| || Sbjct: 603 acatgttctccgggacgcaccatctcagcctcctccaggcatagaacatattcctcgtcg 544 Query: 635 ggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttctcg 694 ||||||||||||||||||||||||||||| || ||||| |||||||| || ||||||||| Sbjct: 543 ggaattttctccttcaggttgtacagaaggacgtgctcgaatagcaccacggggttctcg 484 Query: 695 ctcct 699 ||||| Sbjct: 483 ctcct 479 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 aagcctataccacaatgaacacctcgctaca 135 ||||||||||||||||| | ||||||||||| Sbjct: 1059 aagcctataccacaatggatacctcgctaca 1029
>gb|BT016687.1| Zea mays clone Contig520 mRNA sequence Length = 1423 Score = 490 bits (247), Expect = e-135 Identities = 412/467 (88%) Strand = Plus / Minus Query: 233 gcagcaacaatctgggcaggctgcacgactgtcgcatcctccaaagttgcggcgtacggg 292 ||||| || ||||||||||| || | || || |||||||||| ||| || || || ||| Sbjct: 1208 gcagccacgatctgggcagggtgggcaacggttgcatcctccagagtcgcagcatatggg 1149 Query: 293 gtcggcacatcctgagatgacaggcacatgatgggggcgtcgaggtagtcccagaagttg 352 || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| Sbjct: 1148 gtaggcacatcctgagatgacaggcacatgatgggggcgtcaaggtagtcccagaaattg 1089 Query: 353 tcgatgatggccgacctcagactggcgccgatcccgccagtgcgcatgcactcctccaca 412 |||| |||||||||||| || ||||||||||||| || |||||||||||||||||||| Sbjct: 1088 tcgacgatggccgacctaagggtggcgccgatcccacccgtgcgcatgcactcctccacg 1029 Query: 413 atcagcacgcggtgggtcttcttgatggagttacctattgtgtgcagatcgaatggcttt 472 |||||||||||||||||||||||||||||||| || || ||||||||||| || || || Sbjct: 1028 atcagcacgcggtgggtcttcttgatggagttgccaatagtgtgcagatcaaacgggttc 969 Query: 473 aacgaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcc 532 |||||||| ||||| || ||||| ||||||||||||||||||||||||||||| || ||| Sbjct: 968 aacgacctgatgtcgatgacctcgggatcgtaccctttgttcaccagcgtcttcgctgcc 909 Query: 533 tgcatcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgt 592 |||||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| Sbjct: 908 tgcatcacgtggtacctcatgcgcgagtatgtgagtatagtcacgtgctccccaggccgc 849 Query: 593 accatctcagcctcctccaggcatagcgtatactcctcatcaggaattttctccttcagg 652 |||||||| |||||||||| ||| ||| |||||||| || || ||||||||||||||| Sbjct: 848 accatctcggcctcctccaagcagagcacgtactcctcgtccgggattttctccttcagg 789 Query: 653 ttgtacagaagtacatgctcaaatagcacgacagggttctcgctcct 699 ||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 788 ttgtacagaaggacgtgctcaaacagcaccacagggttctcgctcct 742
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 484 bits (244), Expect = e-133 Identities = 427/488 (87%) Strand = Plus / Minus Query: 212 tattggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcc 271 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 26236811 tattggcagatctgctcgacagcggccacaatttgggcaggctgcacgacggttgcgtcc 26236752 Query: 272 tccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcg 331 |||| |||||| || || || ||||| |||||||| ||||||| ||||||||||||||| Sbjct: 26236751 tccagagttgcagcatatggcgtcggtacatcctgtgatgacaagcacatgatgggggca 26236692 Query: 332 tcgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgcca 391 || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || Sbjct: 26236691 tcaaggtagtcccagaagttatcaatgatggccgacctcaggctggcgccgataccaccc 26236632 Query: 392 gtgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctatt 451 || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 26236631 gttcgcatgcactcctccacaatcagaacgcggtgggtcttcttaatggagttccctatc 26236572 Query: 452 gtgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttg 511 ||||||||||||||||| || | |||||| || ||||| ||||| ||||||||||||||| Sbjct: 26236571 gtgtgcagatcgaatggtttcagcgacctgatatcaatgacctccggatcgtaccctttg 26236512 Query: 512 ttcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggata 571 |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 26236511 ttcaccagtgtcttggctgcctgcatcacatggtacctcatgcgagagtacgtgaggatg 26236452 Query: 572 gtcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctca 631 |||||||||||||| || ||||||||||| |||||||||| ||| | || |||||| Sbjct: 26236451 gtcacatgctcacctggacgtaccatctcggcctcctccaagcagcaaatgtattcctca 26236392 Query: 632 tcaggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttc 691 ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 26236391 tcagggatcttctccttcaggttgtacagaaggacatgctcgaacagcaccacagggttc 26236332 Query: 692 tcgctcct 699 || ||||| Sbjct: 26236331 tcactcct 26236324
>dbj|AK101464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033040H13, full insert sequence Length = 1406 Score = 484 bits (244), Expect = e-133 Identities = 427/488 (87%) Strand = Plus / Minus Query: 212 tattggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcc 271 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 1259 tattggcagatctgctcgacagcggccacaatttgggcaggctgcacgacggttgcgtcc 1200 Query: 272 tccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcg 331 |||| |||||| || || || ||||| |||||||| ||||||| ||||||||||||||| Sbjct: 1199 tccagagttgcagcatatggcgtcggtacatcctgtgatgacaagcacatgatgggggca 1140 Query: 332 tcgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgcca 391 || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || Sbjct: 1139 tcaaggtagtcccagaagttatcaatgatggccgacctcaggctggcgccgataccaccc 1080 Query: 392 gtgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctatt 451 || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 1079 gttcgcatgcactcctccacaatcagaacgcggtgggtcttcttaatggagttccctatc 1020 Query: 452 gtgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttg 511 ||||||||||||||||| || | |||||| || ||||| ||||| ||||||||||||||| Sbjct: 1019 gtgtgcagatcgaatggtttcagcgacctgatatcaatgacctccggatcgtaccctttg 960 Query: 512 ttcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggata 571 |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 959 ttcaccagtgtcttggctgcctgcatcacatggtacctcatgcgagagtacgtgaggatg 900 Query: 572 gtcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctca 631 |||||||||||||| || ||||||||||| |||||||||| ||| | || |||||| Sbjct: 899 gtcacatgctcacctggacgtaccatctcggcctcctccaagcagcaaatgtattcctca 840 Query: 632 tcaggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttc 691 ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 839 tcagggatcttctccttcaggttgtacagaaggacatgctcgaacagcaccacagggttc 780 Query: 692 tcgctcct 699 || ||||| Sbjct: 779 tcactcct 772
>dbj|AK063753.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A03, full insert sequence Length = 1415 Score = 484 bits (244), Expect = e-133 Identities = 427/488 (87%) Strand = Plus / Minus Query: 212 tattggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcc 271 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 1258 tattggcagatctgctcgacagcggccacaatttgggcaggctgcacgacggttgcgtcc 1199 Query: 272 tccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcg 331 |||| |||||| || || || ||||| |||||||| ||||||| ||||||||||||||| Sbjct: 1198 tccagagttgcagcatatggcgtcggtacatcctgtgatgacaagcacatgatgggggca 1139 Query: 332 tcgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgcca 391 || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || Sbjct: 1138 tcaaggtagtcccagaagttatcaatgatggccgacctcaggctggcgccgataccaccc 1079 Query: 392 gtgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctatt 451 || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 1078 gttcgcatgcactcctccacaatcagaacgcggtgggtcttcttaatggagttccctatc 1019 Query: 452 gtgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttg 511 ||||||||||||||||| || | |||||| || ||||| ||||| ||||||||||||||| Sbjct: 1018 gtgtgcagatcgaatggtttcagcgacctgatatcaatgacctccggatcgtaccctttg 959 Query: 512 ttcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggata 571 |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 958 ttcaccagtgtcttggctgcctgcatcacatggtacctcatgcgagagtacgtgaggatg 899 Query: 572 gtcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctca 631 |||||||||||||| || ||||||||||| |||||||||| ||| | || |||||| Sbjct: 898 gtcacatgctcacctggacgtaccatctcggcctcctccaagcagcaaatgtattcctca 839 Query: 632 tcaggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttc 691 ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 838 tcagggatcttctccttcaggttgtacagaaggacatgctcgaacagcaccacagggttc 779 Query: 692 tcgctcct 699 || ||||| Sbjct: 778 tcactcct 771
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 484 bits (244), Expect = e-133 Identities = 427/488 (87%) Strand = Plus / Minus Query: 212 tattggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcc 271 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 26164987 tattggcagatctgctcgacagcggccacaatttgggcaggctgcacgacggttgcgtcc 26164928 Query: 272 tccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcg 331 |||| |||||| || || || ||||| |||||||| ||||||| ||||||||||||||| Sbjct: 26164927 tccagagttgcagcatatggcgtcggtacatcctgtgatgacaagcacatgatgggggca 26164868 Query: 332 tcgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgcca 391 || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || Sbjct: 26164867 tcaaggtagtcccagaagttatcaatgatggccgacctcaggctggcgccgataccaccc 26164808 Query: 392 gtgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctatt 451 || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 26164807 gttcgcatgcactcctccacaatcagaacgcggtgggtcttcttaatggagttccctatc 26164748 Query: 452 gtgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttg 511 ||||||||||||||||| || | |||||| || ||||| ||||| ||||||||||||||| Sbjct: 26164747 gtgtgcagatcgaatggtttcagcgacctgatatcaatgacctccggatcgtaccctttg 26164688 Query: 512 ttcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggata 571 |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 26164687 ttcaccagtgtcttggctgcctgcatcacatggtacctcatgcgagagtacgtgaggatg 26164628 Query: 572 gtcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctca 631 |||||||||||||| || ||||||||||| |||||||||| ||| | || |||||| Sbjct: 26164627 gtcacatgctcacctggacgtaccatctcggcctcctccaagcagcaaatgtattcctca 26164568 Query: 632 tcaggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttc 691 ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 26164567 tcagggatcttctccttcaggttgtacagaaggacatgctcgaacagcaccacagggttc 26164508 Query: 692 tcgctcct 699 || ||||| Sbjct: 26164507 tcactcct 26164500
>emb|AL731885.4|CNS08C8P Oryza sativa chromosome 12, . BAC OSJNBb0016A10 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 133978 Score = 484 bits (244), Expect = e-133 Identities = 427/488 (87%) Strand = Plus / Minus Query: 212 tattggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcc 271 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 795 tattggcagatctgctcgacagcggccacaatttgggcaggctgcacgacggttgcgtcc 736 Query: 272 tccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcg 331 |||| |||||| || || || ||||| |||||||| ||||||| ||||||||||||||| Sbjct: 735 tccagagttgcagcatatggcgtcggtacatcctgtgatgacaagcacatgatgggggca 676 Query: 332 tcgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgcca 391 || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || Sbjct: 675 tcaaggtagtcccagaagttatcaatgatggccgacctcaggctggcgccgataccaccc 616 Query: 392 gtgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctatt 451 || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 615 gttcgcatgcactcctccacaatcagaacgcggtgggtcttcttaatggagttccctatc 556 Query: 452 gtgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttg 511 ||||||||||||||||| || | |||||| || ||||| ||||| ||||||||||||||| Sbjct: 555 gtgtgcagatcgaatggtttcagcgacctgatatcaatgacctccggatcgtaccctttg 496 Query: 512 ttcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggata 571 |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 495 ttcaccagtgtcttggctgcctgcatcacatggtacctcatgcgagagtacgtgaggatg 436 Query: 572 gtcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctca 631 |||||||||||||| || ||||||||||| |||||||||| ||| | || |||||| Sbjct: 435 gtcacatgctcacctggacgtaccatctcggcctcctccaagcagcaaatgtattcctca 376 Query: 632 tcaggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttc 691 ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 375 tcagggatcttctccttcaggttgtacagaaggacatgctcgaacagcaccacagggttc 316 Query: 692 tcgctcct 699 || ||||| Sbjct: 315 tcactcct 308
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 144241 Score = 484 bits (244), Expect = e-133 Identities = 427/488 (87%) Strand = Plus / Minus Query: 212 tattggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcc 271 |||||||| || ||||||||||| || ||||| ||||||||||||||||| || || ||| Sbjct: 127049 tattggcagatctgctcgacagcggccacaatttgggcaggctgcacgacggttgcgtcc 126990 Query: 272 tccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcg 331 |||| |||||| || || || ||||| |||||||| ||||||| ||||||||||||||| Sbjct: 126989 tccagagttgcagcatatggcgtcggtacatcctgtgatgacaagcacatgatgggggca 126930 Query: 332 tcgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgcca 391 || ||||||||||||||||| || ||||||||||||||||| ||||||||||| || || Sbjct: 126929 tcaaggtagtcccagaagttatcaatgatggccgacctcaggctggcgccgataccaccc 126870 Query: 392 gtgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctatt 451 || ||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| Sbjct: 126869 gttcgcatgcactcctccacaatcagaacgcggtgggtcttcttaatggagttccctatc 126810 Query: 452 gtgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttg 511 ||||||||||||||||| || | |||||| || ||||| ||||| ||||||||||||||| Sbjct: 126809 gtgtgcagatcgaatggtttcagcgacctgatatcaatgacctccggatcgtaccctttg 126750 Query: 512 ttcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggata 571 |||||||| ||||| || ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 126749 ttcaccagtgtcttggctgcctgcatcacatggtacctcatgcgagagtacgtgaggatg 126690 Query: 572 gtcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctca 631 |||||||||||||| || ||||||||||| |||||||||| ||| | || |||||| Sbjct: 126689 gtcacatgctcacctggacgtaccatctcggcctcctccaagcagcaaatgtattcctca 126630 Query: 632 tcaggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttc 691 ||||| || ||||||||||||||||||||||| |||||||| || ||||| ||||||||| Sbjct: 126629 tcagggatcttctccttcaggttgtacagaaggacatgctcgaacagcaccacagggttc 126570 Query: 692 tcgctcct 699 || ||||| Sbjct: 126569 tcactcct 126562
>gb|AY108511.1| Zea mays PCO079010 mRNA sequence Length = 1714 Score = 450 bits (227), Expect = e-123 Identities = 422/487 (86%) Strand = Plus / Minus Query: 213 attggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcct 272 ||||||| || |||||||| || || || ||||| || |||||||| || || || |||| Sbjct: 1372 attggcagatctgctcgacggcggccacgatctgcgcgggctgcaccacggtggcgtcct 1313 Query: 273 ccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgt 332 ||| || |||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 1312 ccagcgtcgcggcgtacggggtcggcacgtcctgcgacgacaggcacatgatgggggcgt 1253 Query: 333 cgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccag 392 | |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| | Sbjct: 1252 ccaggtagtcccagaagttgtcgatgatggccgaccgcaggctggcgccgatgccgcccg 1193 Query: 393 tgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattg 452 | ||||||||||||||||| |||||||||||||||||||||||||| ||||| || || | Sbjct: 1192 tccgcatgcactcctccacgatcagcacgcggtgggtcttcttgatcgagttcccgatcg 1133 Query: 453 tgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgt 512 ||||||| ||||| ||||| | |||||| ||||| || ||||| || |||||||| |||| Sbjct: 1132 tgtgcaggtcgaacggcttcagcgacctgatgtcgatgacctcggggtcgtaccccttgt 1073 Query: 513 tcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggatag 572 ||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| | Sbjct: 1072 tcaccagcgtcttggcagcctgcatcacgtggtacctcatgcgggagtacgtgaggatgg 1013 Query: 573 tcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctcat 632 |||| |||||||| ||||| |||||||| |||||||||||||| | |||||||| | Sbjct: 1012 tcacgtgctcacctggccgcaccatctccgcctcctccaggcagcagatgtactcctcgt 953 Query: 633 caggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttct 692 | || |||||||||||||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 952 cggggattttctccttcaggttgtacaagaggacgtgctcaaacagcaccacggggttct 893 Query: 693 cgctcct 699 ||||||| Sbjct: 892 cgctcct 886
>gb|BT016727.1| Zea mays clone Contig560 mRNA sequence Length = 1617 Score = 442 bits (223), Expect = e-121 Identities = 421/487 (86%) Strand = Plus / Minus Query: 213 attggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcct 272 ||||||| || |||||||| || || || ||||| || |||||||| || || || |||| Sbjct: 1358 attggcagatctgctcgacggcggccacgatctgcgcgggctgcaccacggtggcgtcct 1299 Query: 273 ccaaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgt 332 ||| || |||||||||||||||||||| ||||| || |||||||||||||||||||||| Sbjct: 1298 ccagcgtcgcggcgtacggggtcggcacgtcctgcgacgacaggcacatgatgggggcgt 1239 Query: 333 cgaggtagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccag 392 | |||||||||||||||||||||||||||||||||| ||| ||||||||||| ||||| | Sbjct: 1238 ccaggtagtcccagaagttgtcgatgatggccgaccgcaggctggcgccgatgccgcccg 1179 Query: 393 tgcgcatgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattg 452 | ||||||||||||||||| |||||||||||||||||||||||||| ||||| || || | Sbjct: 1178 tccgcatgcactcctccacgatcagcacgcggtgggtcttcttgatcgagttcccgatcg 1119 Query: 453 tgtgcagatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgt 512 ||||||| ||||| ||||| | |||||| ||||| || ||||| || |||||||| |||| Sbjct: 1118 tgtgcaggtcgaacggcttcagcgacctgatgtcgatgacctcggggtcgtaccccttgt 1059 Query: 513 tcaccagcgtctttgcagcctgcatcacatggtacctcattcgcgagtatgtgaggatag 572 ||||||||||||| |||||||||||||| ||||||||||| || ||||| |||||||| | Sbjct: 1058 tcaccagcgtcttggcagcctgcatcacgtggtacctcatgcgggagtacgtgaggatgg 999 Query: 573 tcacatgctcaccaggccgtaccatctcagcctcctccaggcatagcgtatactcctcat 632 |||| |||||||| ||||| ||||| || |||||||||||||| | |||||||| | Sbjct: 998 tcacgtgctcacctggccgcaccatttccgcctcctccaggcagcagatgtactcctcgt 939 Query: 633 caggaattttctccttcaggttgtacagaagtacatgctcaaatagcacgacagggttct 692 | || |||||||||||||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 938 cggggattttctccttcaggttgtacaagaggacgtgctcaaacagcaccacggggttct 879 Query: 693 cgctcct 699 ||||||| Sbjct: 878 cgctcct 872
>gb|AY104779.1| Zea mays PCO116203 mRNA sequence Length = 1131 Score = 317 bits (160), Expect = 3e-83 Identities = 253/284 (89%) Strand = Plus / Minus Query: 416 agcacgcggtgggtcttcttgatggagttacctattgtgtgcagatcgaatggctttaac 475 ||||||||||||||||||||||||||||| || || ||||||||||| || ||||| ||| Sbjct: 1131 agcacgcggtgggtcttcttgatggagttgccaatagtgtgcagatcaaacggcttcaac 1072 Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| ||||||||||||||||||||||||||||| || |||||| Sbjct: 1071 gacctgatgtcgatgacctcgggatcgtaccctttgttcaccagcgtcttcgctgcctgc 1012 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 ||||| ||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 1011 atcacgtggtacctcatgcgcgagtatgtgagtatagtcacgtgctccccaggccgcacc 952 Query: 596 atctcagcctcctccaggcatagcgtatactcctcatcaggaattttctccttcaggttg 655 ||||| |||||||||| ||| ||| |||||||| || || |||||||||||||||||| Sbjct: 951 atctcggcctcctccaagcagagcacgtactcctcgtccgggattttctccttcaggttg 892 Query: 656 tacagaagtacatgctcaaatagcacgacagggttctcgctcct 699 |||||||| || |||||||| ||||| ||||||||||||||||| Sbjct: 891 tacagaaggacgtgctcaaacagcaccacagggttctcgctcct 848
>dbj|AK104972.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A07, full insert sequence Length = 397 Score = 176 bits (89), Expect = 6e-41 Identities = 140/157 (89%) Strand = Plus / Minus Query: 215 tggcatatttgctcgacagcagcaacaatctgggcaggctgcacgactgtcgcatcctcc 274 |||||||||||||| || ||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 158 tggcatatttgctcaacggcagccacaatctgggcaggctgcacgacggtggcatcctcc 99 Query: 275 aaagttgcggcgtacggggtcggcacatcctgagatgacaggcacatgatgggggcgtcg 334 | || || || ||||| |||||||||||||| || |||| |||||||||||| ||||| Sbjct: 98 agaggcgcagcatacggcgtcggcacatcctgcgacgacaagcacatgatgggtgcgtca 39 Query: 335 aggtagtcccagaagttgtcgatgatggccgacctca 371 |||||||||||||||||||||||||||||||| |||| Sbjct: 38 aggtagtcccagaagttgtcgatgatggccgatctca 2 Score = 46.1 bits (23), Expect = 0.16 Identities = 29/31 (93%) Strand = Plus / Minus Query: 105 aagcctataccacaatgaacacctcgctaca 135 ||||||||||||||||| | ||||||||||| Sbjct: 254 aagcctataccacaatggatacctcgctaca 224
>ref|NM_129013.2| Arabidopsis thaliana transketolase AT2G34590 mRNA, complete cds Length = 1491 Score = 153 bits (77), Expect = 9e-34 Identities = 131/149 (87%) Strand = Plus / Minus Query: 404 tcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtgtgcagatcg 463 ||||||||||||| || ||||| |||||||| | ||||| || ||||||| ||||| Sbjct: 1153 tcctccacaatcaaaacccggtgtgtcttcttcaccgagtttccaattgtgtagagatca 1094 Query: 464 aatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtc 523 || ||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 1093 aacggcttcaacgaccttatgtcgataacctctggatcataccctttgttcaccagcgtc 1034 Query: 524 tttgcagcctgcatcacatggtacctcat 552 |||||||||||||| |||||||||||||| Sbjct: 1033 tttgcagcctgcattacatggtacctcat 1005
>gb|AY087792.1| Arabidopsis thaliana clone 38439 mRNA, complete sequence Length = 1473 Score = 153 bits (77), Expect = 9e-34 Identities = 131/149 (87%) Strand = Plus / Minus Query: 404 tcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtgtgcagatcg 463 ||||||||||||| || ||||| |||||||| | ||||| || ||||||| ||||| Sbjct: 1153 tcctccacaatcaaaacccggtgtgtcttcttcaccgagtttccaattgtgtagagatca 1094 Query: 464 aatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtc 523 || ||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 1093 aacggcttcaacgaccttatgtcgataacctctggatcataccctttgttcaccagcgtc 1034 Query: 524 tttgcagcctgcatcacatggtacctcat 552 |||||||||||||| |||||||||||||| Sbjct: 1033 tttgcagcctgcattacatggtacctcat 1005
>gb|AF167983.1|AF167983 Arabidopsis thaliana putative pyruvate dehydrogenase beta subunit mRNA, complete cds; nuclear gene encoding plastid protein Length = 1511 Score = 153 bits (77), Expect = 9e-34 Identities = 131/149 (87%) Strand = Plus / Minus Query: 404 tcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtgtgcagatcg 463 ||||||||||||| || ||||| |||||||| | ||||| || ||||||| ||||| Sbjct: 1156 tcctccacaatcaaaacccggtgtgtcttcttcaccgagtttccaattgtgtagagatca 1097 Query: 464 aatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtc 523 || ||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 1096 aacggcttcaacgaccttatgtcgataacctctggatcataccctttgttcaccagcgtc 1037 Query: 524 tttgcagcctgcatcacatggtacctcat 552 |||||||||||||| |||||||||||||| Sbjct: 1036 tttgcagcctgcattacatggtacctcat 1008
>gb|AC004077.3| Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence Length = 93060 Score = 147 bits (74), Expect = 6e-32 Identities = 128/146 (87%) Strand = Plus / Minus Query: 404 tcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtgtgcagatcg 463 ||||||||||||| || ||||| |||||||| | ||||| || ||||||| ||||| Sbjct: 34566 tcctccacaatcaaaacccggtgtgtcttcttcaccgagtttccaattgtgtagagatca 34507 Query: 464 aatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtc 523 || ||||| |||||||||||||| || ||||||||||| ||||||||||||||||||||| Sbjct: 34506 aacggcttcaacgaccttatgtcgataacctctggatcataccctttgttcaccagcgtc 34447 Query: 524 tttgcagcctgcatcacatggtacct 549 |||||||||||||| ||||||||||| Sbjct: 34446 tttgcagcctgcattacatggtacct 34421
>ref|NM_102751.3| Arabidopsis thaliana PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) AT1G30120 (PDH-E1 BETA) mRNA, complete cds Length = 1565 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 1110 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 1051 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 1050 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 991 Query: 596 atctcagc 603 |||||||| Sbjct: 990 atctcagc 983
>gb|U80186.1|ATU80186 Arabidopsis thaliana pyruvate dehydrogenase E1 beta subunit mRNA, nuclear gene encoding plastid protein, complete cds Length = 1441 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 962 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 903 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 902 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 843 Query: 596 atctcagc 603 |||||||| Sbjct: 842 atctcagc 835
>gb|AY093988.1| Arabidopsis thaliana At1g30120/T2H7_8 mRNA, complete cds Length = 1221 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 956 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 897 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 896 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 837 Query: 596 atctcagc 603 |||||||| Sbjct: 836 atctcagc 829
>gb|AF361583.1| Arabidopsis thaliana At1g30120/T2H7_8 mRNA, complete cds Length = 1502 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 1047 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 988 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 987 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 928 Query: 596 atctcagc 603 |||||||| Sbjct: 927 atctcagc 920
>dbj|AK221898.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-28-A12 Length = 1443 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 981 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 922 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 921 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 862 Query: 596 atctcagc 603 |||||||| Sbjct: 861 atctcagc 854
>emb|BX818442.1|CNS0ACQY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL79ZC08 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 614 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 162 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 103 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 102 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 43 Query: 596 atctcagc 603 |||||||| Sbjct: 42 atctcagc 35
>gb|AC074176.5|AC074176 Arabidopsis thaliana chromosome 1 BAC T2H7 genomic sequence, complete sequence Length = 72058 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 42400 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 42341 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 42340 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 42281 Query: 596 atctcagc 603 |||||||| Sbjct: 42280 atctcagc 42273
>gb|AY087733.1| Arabidopsis thaliana clone 38062 mRNA, complete sequence Length = 1562 Score = 111 bits (56), Expect = 3e-21 Identities = 110/128 (85%) Strand = Plus / Minus Query: 476 gaccttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgc 535 ||||| ||||| || ||||| || || ||||||||||||||||| || ||||| |||||| Sbjct: 1110 gacctgatgtcgataacctcggggtcataccctttgttcaccagagtttttgctgcctgc 1051 Query: 536 atcacatggtacctcattcgcgagtatgtgaggatagtcacatgctcaccaggccgtacc 595 |||||||||||||||||||||||||| |||||||| || | ||||| ||||| | ||| Sbjct: 1050 atcacatggtacctcattcgcgagtaagtgaggatggtaatgtgctcgccaggtctgacc 991 Query: 596 atctcagc 603 |||||||| Sbjct: 990 atctcagc 983
>gb|AF124755.1|AF124755 Pinus banksiana pyruvate dehydrogenase E1 beta subunit (Sb68) gene, partial cds Length = 517 Score = 95.6 bits (48), Expect = 2e-16 Identities = 197/247 (79%) Strand = Plus / Minus Query: 299 acatcctgagatgacaggcacatgatgggggcgtcgaggtagtcccagaagttgtcgatg 358 |||||||| || || | |||||||||||| || || | ||||||||||||||| || || Sbjct: 247 acatcctgtgaagataagcacatgatgggtgcatctaagtagtcccagaagttttcaata 188 Query: 359 atggccgacctcagactggcgccgatcccgccagtgcgcatgcactcctccacaatcagc 418 || || | ||| ||||| || || || || ||||| ||||||||||| || ||||||||| Sbjct: 187 attgcagccctgagactcgctccaatgccaccagtacgcatgcactcttcaacaatcagc 128 Query: 419 acgcggtgggtcttcttgatggagttacctattgtgtgcagatcgaatggctttaacgac 478 || | || |||||||| || || || || |||||||||| || |||||||| || || Sbjct: 127 actctatgtgtcttctttattgaattcccaattgtgtgcaagtcaaatggcttcaaagag 68 Query: 479 cttatgtcaatcacctctggatcgtaccctttgttcaccagcgtctttgcagcctgcatc 538 | |||||||| | ||||||||| || || || ||||| | |||||||| ||||||||| Sbjct: 67 cggatgtcaattatctctggatcatatcccttattcactaaagtctttgcngcctgcatc 8 Query: 539 acatggt 545 ||||||| Sbjct: 7 acatggt 1
>gb|AF051249.1|AF051249 Picea mariana pyruvate dehydrogenase E1 beta subunit (Sb68) mRNA, partial cds Length = 1047 Score = 93.7 bits (47), Expect = 7e-16 Identities = 173/215 (80%) Strand = Plus / Minus Query: 338 tagtcccagaagttgtcgatgatggccgacctcagactggcgccgatcccgccagtgcgc 397 |||||||||||||| ||||| || || | ||| ||||| || || || || ||||| ||| Sbjct: 737 tagtcccagaagttttcgataattgcagccctgagactagctccaatgccaccagtacgc 678 Query: 398 atgcactcctccacaatcagcacgcggtgggtcttcttgatggagttacctattgtgtgc 457 |||||||| || ||||||||||| | || |||||||| || || || ||||| |||||| Sbjct: 677 atgcactcttcaacaatcagcactctatgtgtcttctttattgaattccctatggtgtgc 618 Query: 458 agatcgaatggctttaacgaccttatgtcaatcacctctggatcgtaccctttgttcacc 517 | || |||||||| || || | ||||| || | ||||||||| || || |||||||| Sbjct: 617 aagtcaaatggcttcaaagagcggatgtcgattatctctggatcatatcccttgttcact 558 Query: 518 agcgtctttgcagcctgcatcacatggtacctcat 552 | |||||||| ||||||||||||||||| ||||| Sbjct: 557 aaagtctttgctgcctgcatcacatggtatctcat 523
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Minus Query: 440 gagttacctattgtgtgcagat 461 |||||||||||||||||||||| Sbjct: 4800198 gagttacctattgtgtgcagat 4800177
>gb|AC157835.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0013E09, complete sequence Length = 54682 Score = 44.1 bits (22), Expect = 0.61 Identities = 22/22 (100%) Strand = Plus / Plus Query: 440 gagttacctattgtgtgcagat 461 |||||||||||||||||||||| Sbjct: 40886 gagttacctattgtgtgcagat 40907
>gb|AC091454.2| Mus musculus chromosome X, clones RP21-438P10, RP21-382F2, RP21-118B24, Map qA7.1, complete sequences Length = 393632 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ccagtgcgcatgcactcctcc 409 ||||||||||||||||||||| Sbjct: 291229 ccagtgcgcatgcactcctcc 291209
>gb|AC165346.4| Mus musculus BAC clone RP23-354N5 from chromosome 13, complete sequence Length = 233740 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 298 cacatcctgagatgacaggcacatg 322 |||||||||||||||||||| |||| Sbjct: 219216 cacatcctgagatgacaggcgcatg 219240
>gb|AC124183.4| Mus musculus BAC clone RP23-213I18 from 13, complete sequence Length = 215251 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 298 cacatcctgagatgacaggcacatg 322 |||||||||||||||||||| |||| Sbjct: 75337 cacatcctgagatgacaggcgcatg 75313
>dbj|AK132272.1| Mus musculus 18 days pregnant adult female placenta and extra embryonic tissue cDNA, RIKEN full-length enriched library, clone:3830420C14 product:G-protein-coupled receptor 50, full insert sequence Length = 3069 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ccagtgcgcatgcactcctcc 409 ||||||||||||||||||||| Sbjct: 2222 ccagtgcgcatgcactcctcc 2202
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 42.1 bits (21), Expect = 2.4 Identities = 30/33 (90%) Strand = Plus / Plus Query: 643 ctccttcaggttgtacagaagtacatgctcaaa 675 |||||| ||||||||||| || ||||||||||| Sbjct: 184976 ctccttgaggttgtacaggagcacatgctcaaa 185008
>emb|AJ223375.1|PUU223375 Puumala virus RNA, strain Puu/Mellansel/Cg49/94 Length = 1829 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 aaaaaatggatacaaagccta 111 ||||||||||||||||||||| Sbjct: 257 aaaaaatggatacaaagccta 277
>emb|AJ223374.1|PUU223374 Puumala virus RNA, strain Puu/Mellansel/Cg47/94 Length = 1828 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 aaaaaatggatacaaagccta 111 ||||||||||||||||||||| Sbjct: 257 aaaaaatggatacaaagccta 277
>gb|AF099099.1|AF099099 Trypanosoma cruzi TolT1 (tolT1), TolT2 (tolT2), and TolT3 (tolT3) genes, complete cds Length = 6093 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 389 ccagtgcgcatgcactcctccacaa 413 ||||||||||||||||| ||||||| Sbjct: 3516 ccagtgcgcatgcactcatccacaa 3492 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 389 ccagtgcgcatgcactcctccacaa 413 ||||||||||||||||| ||||||| Sbjct: 1860 ccagtgcgcatgcactcatccacaa 1836
>gb|AC002538.1|AC002538 Homo sapiens chromosome 17, clone 138g16, complete sequence Length = 106793 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 134 caaggcaaaaatgacaaattaaagg 158 ||||||||||||||||||| ||||| Sbjct: 78051 caaggcaaaaatgacaaatgaaagg 78027
>emb|AL840624.14| Mouse DNA sequence from clone RP23-183D3 on chromosome X, complete sequence Length = 124795 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 389 ccagtgcgcatgcactcctcc 409 ||||||||||||||||||||| Sbjct: 91257 ccagtgcgcatgcactcctcc 91237
>gb|AY548382.1| Alcaligenes faecalis strain WM2072 htx/ptx operon, complete sequence Length = 8400 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 cgcatgcactcctccacaat 414 |||||||||||||||||||| Sbjct: 1303 cgcatgcactcctccacaat 1322
>gb|AC158537.2| Mus musculus BAC clone RP23-2H7 from chromosome 14, complete sequence Length = 204554 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 attaaaggttcttccaagcc 170 |||||||||||||||||||| Sbjct: 122158 attaaaggttcttccaagcc 122139
>gb|AY728028.1| Cenibacterium arsenoxidans clone M36 FliG (fliG), FliH (fliH), FliI (fliI), FliJ (fliJ), FliK (fliK), FliL (fliL), FliM (fliM), FliN (fliN), FliO (fliO), and FliP (fliP) genes, complete cds Length = 8550 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tttgctcgacagcagcaaca 241 |||||||||||||||||||| Sbjct: 5341 tttgctcgacagcagcaaca 5322
>gb|AF061267.2| Pseudomonas stutzeri strain WM88 operon htx, complete sequence Length = 14979 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 cgcatgcactcctccacaat 414 |||||||||||||||||||| Sbjct: 749 cgcatgcactcctccacaat 768
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cgcggtgggtcttcttgatg 439 |||||||||||||||||||| Sbjct: 817705 cgcggtgggtcttcttgatg 817686
>gb|AC163025.3| Mus musculus chromosome 1, clone RP23-80N7, complete sequence Length = 174774 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 633 caggaattttctccttcagg 652 |||||||||||||||||||| Sbjct: 84422 caggaattttctccttcagg 84441
>emb|AJ965256.1| Dehalococcoides sp. CBDB1 complete genome Length = 1395502 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 gctgaaacagatgatgccct 212 |||||||||||||||||||| Sbjct: 920888 gctgaaacagatgatgccct 920869
>gb|AC147498.14| Medicago truncatula clone mth2-6f18, complete sequence Length = 135726 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 caaaaatgacaaattaaagg 158 |||||||||||||||||||| Sbjct: 43476 caaaaatgacaaattaaagg 43457
>emb|AL354798.13| Human DNA sequence from clone RP11-756A22 on chromosome 13 Contains the 3' end of a novel gene, the CENJP gene for centromere protein J (LAP, CPAP, LIP1, BM032), 2 novel genes, a pseudogene similar to part of solute carrier family 25 (mitochondrial carrier; ornithine transporter) member 15 (SLC25A15), a TPTE and PTEN homologous inositol lipid phosphatase (TPIP) pseudogene, a 60S ribisomal protein L34 (RPL34) pseudogene and 2 CpG islands, complete sequence Length = 167319 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 594 ccatctcagcctcctccagg 613 |||||||||||||||||||| Sbjct: 4520 ccatctcagcctcctccagg 4501
>emb|AL158012.14| Human DNA sequence from clone RP11-157A10 on chromosome 9 Contains part of the gene for a novel GLI Kruppel family member zinc finger protein (FLJ38999), complete sequence Length = 124474 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 307 agatgacaggcacatgatgg 326 |||||||||||||||||||| Sbjct: 81320 agatgacaggcacatgatgg 81301
>emb|BX548154.1|CNS09SBK clone A24K23, A41I8 of Tetraodon nigroviridis Length = 265677 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aggcaaaaatgacaaattaa 155 |||||||||||||||||||| Sbjct: 205909 aggcaaaaatgacaaattaa 205890
>emb|AL732457.1|SPBPB21E7 S.pombe chromosome II BAC pB21E7 Length = 21862 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 tgacaaattaaaggttcttc 164 |||||||||||||||||||| Sbjct: 4559 tgacaaattaaaggttcttc 4540
>emb|BX572609.1|CNS09SBP Tetraodon nigroviridis BAC sequence Length = 265677 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 aggcaaaaatgacaaattaa 155 |||||||||||||||||||| Sbjct: 205909 aggcaaaaatgacaaattaa 205890
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 gccgacctcagactggcgcc 381 |||||||||||||||||||| Sbjct: 6173160 gccgacctcagactggcgcc 6173179
>emb|CT010474.12| Mouse DNA sequence from clone RP23-199B14 on chromosome 12, complete sequence Length = 205340 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 caaaaatgacaaattaaagg 158 |||||||||||||||||||| Sbjct: 114550 caaaaatgacaaattaaagg 114569
>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence Length = 206740 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 caaggcaaaaatgacaaatt 153 |||||||||||||||||||| Sbjct: 95833 caaggcaaaaatgacaaatt 95814
>emb|AL672105.16| Mouse DNA sequence from clone RP23-326D14 on chromosome X, complete sequence Length = 172363 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 656 tacagaagtacatgctcaaa 675 |||||||||||||||||||| Sbjct: 52903 tacagaagtacatgctcaaa 52884
>gb|U09962.1|HSU09962 Human ferritin H (FTHP2) pseudogene, partial cds Length = 1125 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 acaaggcaaaaatgacaaat 152 |||||||||||||||||||| Sbjct: 1052 acaaggcaaaaatgacaaat 1071 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,149,248 Number of Sequences: 3902068 Number of extensions: 6149248 Number of successful extensions: 128487 Number of sequences better than 10.0: 59 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 128235 Number of HSP's gapped (non-prelim): 252 length of query: 699 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 676 effective length of database: 17,143,297,704 effective search space: 11588869247904 effective search space used: 11588869247904 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)