ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38p14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_463712.1| Oryza sativa (japonica cultivar-group), predic... 143 8e-31
2dbj|AK111411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 8e-31
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
4dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic D... 70 9e-09
5gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete g... 44 0.52
6gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome 40 8.1
7gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 8.1
8dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, ... 40 8.1
9dbj|AB020755.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 8.1
10ref|XM_318459.2| Anopheles gambiae str. PEST ENSANGP00000002816 ... 40 8.1

>ref|XM_463712.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1983

 Score =  143 bits (72), Expect = 8e-31
 Identities = 171/205 (83%)
 Strand = Plus / Minus

                                                                        
Query: 393  ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452
            |||||| |||| ||||||||||| || ||||||||||||||||| || | ||   |||||
Sbjct: 1979 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 1920

                                                                        
Query: 453  ttcatgttcagcatcttctcttgggcagggctatcgccatcaagcatggagtatgcccga 512
            ||  | |||| |||||||||||||||| || |||| ||||||||||| ||||| |||  |
Sbjct: 1919 ttgttcttcaacatcttctcttgggcatgggtatcaccatcaagcatagagtacgcctta 1860

                                                                        
Query: 513  gcaagtgagacaagtgtcgggtagagctctataactgcaattgcggtttnttctgtcacc 572
            |||||||||| ||| || || |||||| |||| || |||| ||| | || ||||||||| 
Sbjct: 1859 gcaagtgagaaaagagttggatagagccctatcacagcaagtgcagcttcttctgtcact 1800

                                     
Query: 573  tgtggtacctgcataagttgaaggg 597
            ||||| |||||||||||||||||||
Sbjct: 1799 tgtggcacctgcataagttgaaggg 1775



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>dbj|AK111411.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-F04, full
            insert sequence
          Length = 2441

 Score =  143 bits (72), Expect = 8e-31
 Identities = 171/205 (83%)
 Strand = Plus / Minus

                                                                        
Query: 393  ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452
            |||||| |||| ||||||||||| || ||||||||||||||||| || | ||   |||||
Sbjct: 2100 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 2041

                                                                        
Query: 453  ttcatgttcagcatcttctcttgggcagggctatcgccatcaagcatggagtatgcccga 512
            ||  | |||| |||||||||||||||| || |||| ||||||||||| ||||| |||  |
Sbjct: 2040 ttgttcttcaacatcttctcttgggcatgggtatcaccatcaagcatagagtacgcctta 1981

                                                                        
Query: 513  gcaagtgagacaagtgtcgggtagagctctataactgcaattgcggtttnttctgtcacc 572
            |||||||||| ||| || || |||||| |||| || |||| ||| | || ||||||||| 
Sbjct: 1980 gcaagtgagaaaagagttggatagagccctatcacagcaagtgcagcttcttctgtcact 1921

                                     
Query: 573  tgtggtacctgcataagttgaaggg 597
            ||||| |||||||||||||||||||
Sbjct: 1920 tgtggcacctgcataagttgaaggg 1896



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                            
Query: 393      ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452
                |||||| |||| ||||||||||| || ||||||||||||||||| || | ||   |||||
Sbjct: 41690707 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 41690648

                                                         
Query: 453      ttcatgttcagcatcttctcttgggcagggctatcgccatc 493
                ||  | |||| |||||||||||||||| || |||| |||||
Sbjct: 41690647 ttgttcttcaacatcttctcttgggcatgggtatcaccatc 41690607



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                            
Query: 493      caagcatggagtatgcccgagcaagtgagacaagtgtcgggtagagctctataactgcaa 552
                ||||||| ||||| |||  ||||||||||| ||| || || |||||| |||| || ||||
Sbjct: 41690404 caagcatagagtacgccttagcaagtgagaaaagagttggatagagccctatcacagcaa 41690345

                                                  
Query: 553      ttgcggtttnttctgtcacctgtggtacctgcat 586
                 ||| | || ||||||||| ||||| ||||||||
Sbjct: 41690344 gtgcagcttcttctgtcacttgtggcacctgcat 41690311



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 578      tacctgcataagttgaaggg 597
                ||||||||||||||||||||
Sbjct: 41690215 tacctgcataagttgaaggg 41690196



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>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0466H10
          Length = 176530

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                          
Query: 393    ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452
              |||||| |||| ||||||||||| || ||||||||||||||||| || | ||   |||||
Sbjct: 106309 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 106250

                                                       
Query: 453    ttcatgttcagcatcttctcttgggcagggctatcgccatc 493
              ||  | |||| |||||||||||||||| || |||| |||||
Sbjct: 106249 ttgttcttcaacatcttctcttgggcatgggtatcaccatc 106209



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/94 (81%)
 Strand = Plus / Minus

                                                                          
Query: 493    caagcatggagtatgcccgagcaagtgagacaagtgtcgggtagagctctataactgcaa 552
              ||||||| ||||| |||  ||||||||||| ||| || || |||||| |||| || ||||
Sbjct: 106006 caagcatagagtacgccttagcaagtgagaaaagagttggatagagccctatcacagcaa 105947

                                                
Query: 553    ttgcggtttnttctgtcacctgtggtacctgcat 586
               ||| | || ||||||||| ||||| ||||||||
Sbjct: 105946 gtgcagcttcttctgtcacttgtggcacctgcat 105913



 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 578    tacctgcataagttgaaggg 597
              ||||||||||||||||||||
Sbjct: 105817 tacctgcataagttgaaggg 105798



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>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 44.1 bits (22), Expect = 0.52
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 307     atcatcgagatggcgaccaaaggccg 332
               ||||||||| ||||||||||||||||
Sbjct: 2902642 atcatcgagctggcgaccaaaggccg 2902667



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>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome
          Length = 2427734

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 286     atcacaagaagcggcgccaa 305
               ||||||||||||||||||||
Sbjct: 1193275 atcacaagaagcggcgccaa 1193256



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 409     gcttgaagatatttctgctagccc 432
               ||||||||||||||||||| ||||
Sbjct: 2304826 gcttgaagatatttctgcttgccc 2304803



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>dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, map 22, complete
              sequences
          Length = 220932

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     taagtacagtacatatgata 68
              ||||||||||||||||||||
Sbjct: 101951 taagtacagtacatatgata 101970



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>dbj|AB020755.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1
          Length = 81672

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   gatcggaagattttacgtga 170
             ||||||||||||||||||||
Sbjct: 13192 gatcggaagattttacgtga 13211



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>ref|XM_318459.2| Anopheles gambiae str. PEST ENSANGP00000002816 (ENSANGG00000002329),
            partial mRNA
          Length = 4803

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 448  tgctcttcatgttcagcatcttct 471
            ||||||||| ||||||||||||||
Sbjct: 4747 tgctcttcacgttcagcatcttct 4724


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,647,279
Number of Sequences: 3902068
Number of extensions: 3647279
Number of successful extensions: 59075
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58994
Number of HSP's gapped (non-prelim): 77
length of query: 597
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 574
effective length of database: 17,143,297,704
effective search space: 9840252882096
effective search space used: 9840252882096
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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