| Clone Name | rbags38p14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_463712.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1983 Score = 143 bits (72), Expect = 8e-31 Identities = 171/205 (83%) Strand = Plus / Minus Query: 393 ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452 |||||| |||| ||||||||||| || ||||||||||||||||| || | || ||||| Sbjct: 1979 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 1920 Query: 453 ttcatgttcagcatcttctcttgggcagggctatcgccatcaagcatggagtatgcccga 512 || | |||| |||||||||||||||| || |||| ||||||||||| ||||| ||| | Sbjct: 1919 ttgttcttcaacatcttctcttgggcatgggtatcaccatcaagcatagagtacgcctta 1860 Query: 513 gcaagtgagacaagtgtcgggtagagctctataactgcaattgcggtttnttctgtcacc 572 |||||||||| ||| || || |||||| |||| || |||| ||| | || ||||||||| Sbjct: 1859 gcaagtgagaaaagagttggatagagccctatcacagcaagtgcagcttcttctgtcact 1800 Query: 573 tgtggtacctgcataagttgaaggg 597 ||||| ||||||||||||||||||| Sbjct: 1799 tgtggcacctgcataagttgaaggg 1775
>dbj|AK111411.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-F04, full insert sequence Length = 2441 Score = 143 bits (72), Expect = 8e-31 Identities = 171/205 (83%) Strand = Plus / Minus Query: 393 ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452 |||||| |||| ||||||||||| || ||||||||||||||||| || | || ||||| Sbjct: 2100 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 2041 Query: 453 ttcatgttcagcatcttctcttgggcagggctatcgccatcaagcatggagtatgcccga 512 || | |||| |||||||||||||||| || |||| ||||||||||| ||||| ||| | Sbjct: 2040 ttgttcttcaacatcttctcttgggcatgggtatcaccatcaagcatagagtacgcctta 1981 Query: 513 gcaagtgagacaagtgtcgggtagagctctataactgcaattgcggtttnttctgtcacc 572 |||||||||| ||| || || |||||| |||| || |||| ||| | || ||||||||| Sbjct: 1980 gcaagtgagaaaagagttggatagagccctatcacagcaagtgcagcttcttctgtcact 1921 Query: 573 tgtggtacctgcataagttgaaggg 597 ||||| ||||||||||||||||||| Sbjct: 1920 tgtggcacctgcataagttgaaggg 1896
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 9e-09 Identities = 84/101 (83%) Strand = Plus / Minus Query: 393 ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452 |||||| |||| ||||||||||| || ||||||||||||||||| || | || ||||| Sbjct: 41690707 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 41690648 Query: 453 ttcatgttcagcatcttctcttgggcagggctatcgccatc 493 || | |||| |||||||||||||||| || |||| ||||| Sbjct: 41690647 ttgttcttcaacatcttctcttgggcatgggtatcaccatc 41690607 Score = 54.0 bits (27), Expect = 5e-04 Identities = 77/94 (81%) Strand = Plus / Minus Query: 493 caagcatggagtatgcccgagcaagtgagacaagtgtcgggtagagctctataactgcaa 552 ||||||| ||||| ||| ||||||||||| ||| || || |||||| |||| || |||| Sbjct: 41690404 caagcatagagtacgccttagcaagtgagaaaagagttggatagagccctatcacagcaa 41690345 Query: 553 ttgcggtttnttctgtcacctgtggtacctgcat 586 ||| | || ||||||||| ||||| |||||||| Sbjct: 41690344 gtgcagcttcttctgtcacttgtggcacctgcat 41690311 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tacctgcataagttgaaggg 597 |||||||||||||||||||| Sbjct: 41690215 tacctgcataagttgaaggg 41690196
>dbj|AP003259.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0466H10 Length = 176530 Score = 69.9 bits (35), Expect = 9e-09 Identities = 84/101 (83%) Strand = Plus / Minus Query: 393 ccttcaccccanacaagcttgaagatatttctgctagcccctgcgttcaccatnttgctc 452 |||||| |||| ||||||||||| || ||||||||||||||||| || | || ||||| Sbjct: 106309 ccttcagcccagacaagcttgaatatgtttctgctagcccctgcatttatcagcgtgctc 106250 Query: 453 ttcatgttcagcatcttctcttgggcagggctatcgccatc 493 || | |||| |||||||||||||||| || |||| ||||| Sbjct: 106249 ttgttcttcaacatcttctcttgggcatgggtatcaccatc 106209 Score = 54.0 bits (27), Expect = 5e-04 Identities = 77/94 (81%) Strand = Plus / Minus Query: 493 caagcatggagtatgcccgagcaagtgagacaagtgtcgggtagagctctataactgcaa 552 ||||||| ||||| ||| ||||||||||| ||| || || |||||| |||| || |||| Sbjct: 106006 caagcatagagtacgccttagcaagtgagaaaagagttggatagagccctatcacagcaa 105947 Query: 553 ttgcggtttnttctgtcacctgtggtacctgcat 586 ||| | || ||||||||| ||||| |||||||| Sbjct: 105946 gtgcagcttcttctgtcacttgtggcacctgcat 105913 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 578 tacctgcataagttgaaggg 597 |||||||||||||||||||| Sbjct: 105817 tacctgcataagttgaaggg 105798
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 44.1 bits (22), Expect = 0.52 Identities = 25/26 (96%) Strand = Plus / Plus Query: 307 atcatcgagatggcgaccaaaggccg 332 ||||||||| |||||||||||||||| Sbjct: 2902642 atcatcgagctggcgaccaaaggccg 2902667
>gb|CP000109.1| Thiomicrospira crunogena XCL-2, complete genome Length = 2427734 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 286 atcacaagaagcggcgccaa 305 |||||||||||||||||||| Sbjct: 1193275 atcacaagaagcggcgccaa 1193256
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 409 gcttgaagatatttctgctagccc 432 ||||||||||||||||||| |||| Sbjct: 2304826 gcttgaagatatttctgcttgccc 2304803
>dbj|BS000125.1| Pan troglodytes chromosome 22 clone:PTB-147B08, map 22, complete sequences Length = 220932 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 taagtacagtacatatgata 68 |||||||||||||||||||| Sbjct: 101951 taagtacagtacatatgata 101970
>dbj|AB020755.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MZN1 Length = 81672 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 gatcggaagattttacgtga 170 |||||||||||||||||||| Sbjct: 13192 gatcggaagattttacgtga 13211
>ref|XM_318459.2| Anopheles gambiae str. PEST ENSANGP00000002816 (ENSANGG00000002329), partial mRNA Length = 4803 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 tgctcttcatgttcagcatcttct 471 ||||||||| |||||||||||||| Sbjct: 4747 tgctcttcacgttcagcatcttct 4724 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,647,279 Number of Sequences: 3902068 Number of extensions: 3647279 Number of successful extensions: 59075 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58994 Number of HSP's gapped (non-prelim): 77 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)