ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38p10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycopro... 28 4.9
2NUDH_HAEDU (Q7VPB7) Probable (di)nucleoside polyphosphate hydrol... 28 6.4
3FLBA_EMENI (P38093) Developmental regulator flbA 28 6.4

>MDR10_ARATH (Q9SGY1) Multidrug resistance protein 10 (P-glycoprotein 10)|
          Length = 1316

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/58 (27%), Positives = 29/58 (50%)
 Frame = -1

Query: 203 DEELVVHVAKMKEGSVASATFCSG*NHSYAKDCMLLAVGTVXSCLYSVVVCRLYIRLG 30
           D  +V   A  KE    S +F    + +   DC+L+A+G++ +C++   V   +I  G
Sbjct: 6   DPAIVDMAAAEKEKKRPSVSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFG 63



to top

>NUDH_HAEDU (Q7VPB7) Probable (di)nucleoside polyphosphate hydrolase (EC|
           3.6.1.-)
          Length = 197

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -2

Query: 169 KKDRWLLLRSVADETIVMLKT 107
           +K RW LL+ V+DE+ V LKT
Sbjct: 96  QKQRWFLLQLVSDESAVNLKT 116



to top

>FLBA_EMENI (P38093) Developmental regulator flbA|
          Length = 719

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 52  HTTTEYKHDXTVPTASSIQSLA*LWFHPLQNVAEATDPSFILATCTTNSSS 204
           H     K+D T  +  +I +L  L F     + +  DPS I+ T TT + S
Sbjct: 249 HRVRFTKYDHTFTSEEAINNLGSLKFSQSNRMPDPKDPSRIVTTTTTTTFS 299


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,803,628
Number of Sequences: 219361
Number of extensions: 505003
Number of successful extensions: 1122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top