| Clone Name | rbags38p10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA sequence Length = 1612 Score = 137 bits (69), Expect = 2e-29 Identities = 175/207 (84%), Gaps = 14/207 (6%) Strand = Plus / Minus Query: 19 ctccaacatgcacccaatcttatatagagacgacatacaacaacagaata----taaaca 74 ||||||||||||||||||| |||||| ||| ||||||||||| |||| |||||| Sbjct: 1538 ctccaacatgcacccaatc----atagaggcgatatacaacaacaaaatacttataaaca 1483 Query: 75 tgaccntacggttcccactgctagcagcatacagtctttagcataactatggtttcatcc 134 |||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||| Sbjct: 1482 tgac-atacggttcc-actgctagcagcatacagtctttagcatagctagggtttgatcc 1425 Query: 135 gctacagaacgtagcagaagccaccgatccttctttcatcttggccacatgcaccaccaa 194 ||||| | | || |||| || ||| |||| |||||| |||||||||||||||||| Sbjct: 1424 gctaccaagcataacagatgcaacctatcc----ttcatcctggccacatgcaccaccac 1369 Query: 195 ttcttcatcttgcccacatgcaaggga 221 |||||||||||| |||||||||||||| Sbjct: 1368 ttcttcatcttggccacatgcaaggga 1342
>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence Length = 218714 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Plus Query: 136 ctacagaacgtagcagaagcca 157 |||||||||||||||||||||| Sbjct: 119408 ctacagaacgtagcagaagcca 119429
>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence Length = 192043 Score = 44.1 bits (22), Expect = 0.18 Identities = 22/22 (100%) Strand = Plus / Minus Query: 136 ctacagaacgtagcagaagcca 157 |||||||||||||||||||||| Sbjct: 145261 ctacagaacgtagcagaagcca 145240
>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence Length = 166309 Score = 42.1 bits (21), Expect = 0.71 Identities = 21/21 (100%) Strand = Plus / Plus Query: 163 ccttctttcatcttggccaca 183 ||||||||||||||||||||| Sbjct: 7431 ccttctttcatcttggccaca 7451
>gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, complete sequence Length = 158782 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 gccacatgcaccaccaattc 197 |||||||||||||||||||| Sbjct: 87170 gccacatgcaccaccaattc 87151
>emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chromosome 17, complete sequence Length = 172896 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tccttctttcatcttggcca 181 |||||||||||||||||||| Sbjct: 126860 tccttctttcatcttggcca 126841
>gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, complete sequence Length = 109222 Score = 40.1 bits (20), Expect = 2.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 162 tccttctttcatcttggcca 181 |||||||||||||||||||| Sbjct: 104840 tccttctttcatcttggcca 104859 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,061,124 Number of Sequences: 3902068 Number of extensions: 2061124 Number of successful extensions: 133229 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 133206 Number of HSP's gapped (non-prelim): 20 length of query: 221 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 199 effective length of database: 17,147,199,772 effective search space: 3412292754628 effective search space used: 3412292754628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)