ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38p09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full... 416 e-113
2emb|AJ575224.1|OSA575224 Oryza sativa (japonica cultivar-group) ... 98 4e-17
3gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative E... 98 4e-17
4gb|AF364176.1| Oryza sativa putative EREBP-type transcription fa... 98 4e-17
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
6dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
7dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
8dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
9dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clon... 98 4e-17
10gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ... 90 9e-15
11emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chr... 50 0.008
12gb|AY105702.1| Zea mays PCO125609 mRNA sequence 48 0.032
13gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, comple... 46 0.13
14emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-6... 46 0.13
15emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-7... 46 0.13
16gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 spl... 46 0.13
17gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, comp... 44 0.49
18gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, com... 44 0.49
19gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, co... 42 2.0
20gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, co... 42 2.0
21gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, ... 42 2.0
22emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on ch... 42 2.0
23emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 42 2.0
24gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone... 42 2.0
25gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, com... 40 7.7
26gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, com... 40 7.7
27gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome... 40 7.7
28gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, com... 40 7.7
29emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chro... 40 7.7
30gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosom... 40 7.7
31gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, com... 40 7.7
32emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24... 40 7.7
33emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment ... 40 7.7
34emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chr... 40 7.7
35emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chr... 40 7.7 
>gb|BT009027.1| Triticum aestivum clone wdk3c.pk021.e13:fis, full insert mRNA
            sequence
          Length = 1612

 Score =  416 bits (210), Expect = e-113
 Identities = 246/258 (95%)
 Strand = Plus / Minus

                                                                        
Query: 303  ctcattgtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacagctacgcc 362
            ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1160 ctcatggtcaaaagcagggatgtcttgtgcaccatttccctgaggcagcacggctacacc 1101

                                                                        
Query: 363  aaagttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgc 422
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 1100 aaagttgttcctcattctctttggagctccaccttgcaggtaagcgggctcgccgtatgc 1041

                                                                        
Query: 423  cggcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtc 482
            |||||||||||||||| |||| ||||||||||| |||||||| |||||||||||||||||
Sbjct: 1040 cggcatggcagcagcattcggaacgaagacggatgtgtagtctggggtcatggcctcgtc 981

                                                                        
Query: 483  gtcccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcat 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980  gtcccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcat 921

                              
Query: 543  tccgaatgcctcggtggg 560
             ||||||| ||| |||||
Sbjct: 920  cccgaatgtctcagtggg 903



 Score =  291 bits (147), Expect = 1e-75
 Identities = 234/260 (90%), Gaps = 6/260 (2%)
 Strand = Plus / Minus

                                                                        
Query: 45   tataaacatgaccatacggttcccactgctagcagcatacagtctttagcataactatgg 104
            |||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct: 1490 tataaacatgac-atacggttcc-actgctagcagcatacagtctttagcatagctaggg 1433

                                                                        
Query: 105  tttcatccgctacagaacgtagcagaagccaccgatccttctttcatcttggccacatgc 164
            ||| |||||||||  | | || |||| || ||| |||||||    ||| |||||||||||
Sbjct: 1432 tttgatccgctaccaagcataacagatgcaacctatccttc----atcctggccacatgc 1377

                                                                        
Query: 165  accaccaattcttcatcttgcccacatgcaagggacatttgtgctgtccgcagaccacat 224
            ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| 
Sbjct: 1376 accaccacttcttcatcttggccacatgcaagggacatttgtgctatccgcagaccacac 1317

                                                                        
Query: 225  tgacaagaaccatcaataaccaccagctgccatgaacagctcatcgaggctccagagatc 284
            ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct: 1316 tgacaagaaccatcaataaccaccagccgccatgaagagctcatcaaggctccagagatc 1257

                                
Query: 285  cccactgcttgccccatcct 304
            ||||||||||||||| ||||
Sbjct: 1256 cccactgcttgccccgtcct 1237
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>emb|AJ575224.1|OSA575224 Oryza sativa (japonica cultivar-group) partial mRNA for EREBP-1
           protein
          Length = 585

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                       
Query: 365 agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
           |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 505 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 446

                                                                       
Query: 425 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
           |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 445 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 389

                                                                       
Query: 485 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
           |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 388 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 329

                          
Query: 545 cgaatgcctcggtgg 559
           |||||| ||| ||||
Sbjct: 328 cgaatgtctcagtgg 314
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>gb|DQ417199.1| Oryza sativa (japonica cultivar-group) putative EREBP transcription
           factor (EREBP) mRNA, complete cds
          Length = 1445

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                       
Query: 365 agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
           |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 978 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 919

                                                                       
Query: 425 gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
           |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 918 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 862

                                                                       
Query: 485 cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
           |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 861 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 802

                          
Query: 545 cgaatgcctcggtgg 559
           |||||| ||| ||||
Sbjct: 801 cgaatgtctcagtgg 787



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 245  caccagctgccatgaacagctcatcgaggctccaga 280
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1188 caccagctgccatgagcagctcatcaaggctccaga 1153
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>gb|AF364176.1| Oryza sativa putative EREBP-type transcription factor mRNA, complete
            cds
          Length = 1584

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
            |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 1052 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 993

                                                                        
Query: 425  gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
            |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 992  gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 936

                                                                        
Query: 485  cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
            |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 935  cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 876

                           
Query: 545  cgaatgcctcggtgg 559
            |||||| ||| ||||
Sbjct: 875  cgaatgtctcagtgg 861



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 245  caccagctgccatgaacagctcatcgaggctccaga 280
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1262 caccagctgccatgagcagctcatcaaggctccaga 1227
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                            
Query: 365      agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
                |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 15907376 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 15907317

                                                                            
Query: 425      gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
                |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 15907316 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 15907260

                                                                            
Query: 485      cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
                |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 15907259 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 15907200

                               
Query: 545      cgaatgcctcggtgg 559
                |||||| ||| ||||
Sbjct: 15907199 cgaatgtctcagtgg 15907185



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                    
Query: 245      caccagctgccatgaacagctcatcgaggctccaga 280
                ||||||||||||||| ||||||||| ||||||||||
Sbjct: 15907586 caccagctgccatgagcagctcatcaaggctccaga 15907551
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>dbj|AP005551.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1081_G10
          Length = 107955

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                         
Query: 365   agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
             |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 70502 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 70443

                                                                         
Query: 425   gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
             |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 70442 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 70386

                                                                         
Query: 485   cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
             |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 70385 cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 70326

                            
Query: 545   cgaatgcctcggtgg 559
             |||||| ||| ||||
Sbjct: 70325 cgaatgtctcagtgg 70311



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                 
Query: 245   caccagctgccatgaacagctcatcgaggctccaga 280
             ||||||||||||||| ||||||||| ||||||||||
Sbjct: 70712 caccagctgccatgagcagctcatcaaggctccaga 70677
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>dbj|AK111690.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008G03, full
            insert sequence
          Length = 1603

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
            |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 1082 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 1023

                                                                        
Query: 425  gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
            |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 1022 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 966

                                                                        
Query: 485  cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
            |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 965  cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 906

                           
Query: 545  cgaatgcctcggtgg 559
            |||||| ||| ||||
Sbjct: 905  cgaatgtctcagtgg 891



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 245  caccagctgccatgaacagctcatcgaggctccaga 280
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1292 caccagctgccatgagcagctcatcaaggctccaga 1257
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>dbj|AK104576.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-A07, full
            insert sequence
          Length = 1596

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
            |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 1076 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 1017

                                                                        
Query: 425  gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
            |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 1016 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 960

                                                                        
Query: 485  cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
            |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 959  cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 900

                           
Query: 545  cgaatgcctcggtgg 559
            |||||| ||| ||||
Sbjct: 899  cgaatgtctcagtgg 885



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 245  caccagctgccatgaacagctcatcgaggctccaga 280
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccaga 1251
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>dbj|AK104723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-B05, full
            insert sequence
          Length = 1596

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 159/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
            |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 1076 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 1017

                                                                        
Query: 425  gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
            |||||||||||  |   || |||||||| || |||||||| ||||||| ||  || || |
Sbjct: 1016 gcatggcagcatta---ggaacgaagactgaagtgtagtctggggtcagggtgtcatcct 960

                                                                        
Query: 485  cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
            |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 959  cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 900

                           
Query: 545  cgaatgcctcggtgg 559
            |||||| ||| ||||
Sbjct: 899  cgaatgtctcagtgg 885



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 245  caccagctgccatgaacagctcatcgaggctccaga 280
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1286 caccagctgccatgagcagctcatcaaggctccaga 1251
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>gb|AY831392.1| Oryza sativa (indica cultivar-group) BTH-induced ERF transcriptional
            factor 1 (BIERF1) mRNA, complete cds
          Length = 1613

 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 158/195 (81%), Gaps = 3/195 (1%)
 Strand = Plus / Minus

                                                                        
Query: 365  agttgttcctcattctctttggagctccgccttgcaggtaagcgggctcgccgtacgccg 424
            |||||||||||||||||||||| ||||| |||  ||||||||| || || || || || |
Sbjct: 1001 agttgttcctcattctctttggcgctccacctgtcaggtaagcaggttcaccatatgctg 942

                                                                        
Query: 425  gcatggcagcagcactcggtacgaagacggacgtgtagtccggggtcatggcctcgtcgt 484
            |||||||||||  |   || || ||||| || |||||||| ||||||| ||  || || |
Sbjct: 941  gcatggcagcatta---ggaacaaagactgaagtgtagtctggggtcagggtgtcatcct 885

                                                                        
Query: 485  cccacccaaagtcagtggagccaaatgaattgctgctctggtcagagagcatgttcattc 544
            |||| |||||||| |  ||||||||||| |||||||||   |||||||||||||||||  
Sbjct: 884  cccaaccaaagtctgaagagccaaatgagttgctgctcgtatcagagagcatgttcatct 825

                           
Query: 545  cgaatgcctcggtgg 559
            |||||| ||| ||||
Sbjct: 824  cgaatgtctcagtgg 810



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Minus

                                                
Query: 245  caccagctgccatgaacagctcatcgaggctccaga 280
            ||||||||||||||| ||||||||| ||||||||||
Sbjct: 1211 caccagctgccatgagcagctcatcaaggctccaga 1176
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>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete
              sequence
          Length = 225684

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 298    ccatcctcattgtcaaaagcaggga 322
              |||||||||||||||||||||||||
Sbjct: 204068 ccatcctcattgtcaaaagcaggga 204092
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>gb|AY105702.1| Zea mays PCO125609 mRNA sequence
          Length = 1889

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 371  tcctcattctctttggagctccgccttgcaggtaag 406
            ||||||||||||| || ||||||||||||| |||||
Sbjct: 1286 tcctcattctcttcggcgctccgccttgcatgtaag 1251



 Score = 44.1 bits (22), Expect = 0.49
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 255  catgaacagctcatcgaggctccagagatccccactgcttgccccatcct 304
            ||||| |||||| ||||||||||||| ||||||   ||| ||||||||||
Sbjct: 1510 catgagcagctcgtcgaggctccagatatccccggcgctcgccccatcct 1461
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>gb|AF215937.1|AF215937 Homo sapiens 3pv2 and 5p152 genes, complete cds, complete sequence
          Length = 143340

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 182   ttgcccacatgcaagggacattt 204
             |||||||||||||||||||||||
Sbjct: 58727 ttgcccacatgcaagggacattt 58749
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>emb|AL355094.3|CNS05TCD Human chromosome 14 DNA sequence BAC R-676P5 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 170273

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 182  ttgcccacatgcaagggacattt 204
            |||||||||||||||||||||||
Sbjct: 4156 ttgcccacatgcaagggacattt 4134
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>emb|AL161756.6|CNS01RHJ Human chromosome 14 DNA sequence BAC R-712C19 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 176257

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 182    ttgcccacatgcaagggacattt 204
              |||||||||||||||||||||||
Sbjct: 148513 ttgcccacatgcaagggacattt 148491
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>gb|AF061054.1|AF061054 Homo sapiens estrogen receptor beta 4 splice variant mRNA, partial
           cds
          Length = 659

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 182 ttgcccacatgcaagggacattt 204
           |||||||||||||||||||||||
Sbjct: 262 ttgcccacatgcaagggacattt 240
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>gb|AC158310.3| Mus musculus chromosome 5, clone RP23-106N8, complete sequence
          Length = 218714

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 114    ctacagaacgtagcagaagcca 135
              ||||||||||||||||||||||
Sbjct: 119408 ctacagaacgtagcagaagcca 119429
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>gb|AC105987.21| Mus musculus chromosome 5, clone RP24-446I1, complete sequence
          Length = 192043

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 114    ctacagaacgtagcagaagcca 135
              ||||||||||||||||||||||
Sbjct: 145261 ctacagaacgtagcagaagcca 145240
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>gb|AC126424.12| Mus musculus chromosome 17, clone RP23-19K10, complete sequence
          Length = 182696

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   caccatttccctgaggcagca 352
             |||||||||||||||||||||
Sbjct: 19989 caccatttccctgaggcagca 19969
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>gb|AC011944.12| Homo sapiens chromosome 15, clone RP11-16K12, complete sequence
          Length = 166309

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 141  ccttctttcatcttggccaca 161
            |||||||||||||||||||||
Sbjct: 7431 ccttctttcatcttggccaca 7451
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>gb|AC087890.18| Mus Musculus Strain C57BL6/J Chromosome 10 BAC, RP23-348F2, Complete
              Sequence, complete sequence
          Length = 194881

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 247    ccagctgccatgaacagctca 267
              |||||||||||||||||||||
Sbjct: 180890 ccagctgccatgaacagctca 180910
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>emb|BX950219.10| Mouse DNA sequence from clone RP23-303E24 on chromosome 4, complete
             sequence
          Length = 167874

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 232   aaccatcaataaccaccagct 252
             |||||||||||||||||||||
Sbjct: 58533 aaccatcaataaccaccagct 58513
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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
              sequence
          Length = 268616

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 332    caccatttccctgaggcagca 352
              |||||||||||||||||||||
Sbjct: 105481 caccatttccctgaggcagca 105461
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>gb|AC079680.34| Mus musculus strain C57BL/6J chromosome 10 clone rp23-282p18, complete
             sequence
          Length = 175217

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 247   ccagctgccatgaacagctca 267
             |||||||||||||||||||||
Sbjct: 64305 ccagctgccatgaacagctca 64325
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>gb|AC112965.10| Mus musculus chromosome 1, clone RP24-95N17, complete sequence
          Length = 158782

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gccacatgcaccaccaattc 175
             ||||||||||||||||||||
Sbjct: 87170 gccacatgcaccaccaattc 87151
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>gb|AC114409.17| Mus musculus chromosome 5, clone RP23-148F6, complete sequence
          Length = 222692

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   caccagctgccatgaacagc 264
             ||||||||||||||||||||
Sbjct: 38373 caccagctgccatgaacagc 38354
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>gb|AC161884.5| Mus musculus BAC clone RP23-77K23 from chromosome 14, complete sequence
          Length = 243730

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 524    ggtcagagagcatgttcatt 543
              ||||||||||||||||||||
Sbjct: 110647 ggtcagagagcatgttcatt 110628
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>gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, complete sequence
          Length = 188141

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 524   ggtcagagagcatgttcatt 543
             ||||||||||||||||||||
Sbjct: 12010 ggtcagagagcatgttcatt 12029
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>emb|CT025848.6| Mouse DNA sequence from clone RP24-326K2 on chromosome 17, complete
              sequence
          Length = 172896

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tccttctttcatcttggcca 159
              ||||||||||||||||||||
Sbjct: 126860 tccttctttcatcttggcca 126841
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>gb|AC123033.4| Mus musculus BAC clone RP24-482F14 from chromosome 5, complete sequence
          Length = 180745

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    caccagctgccatgaacagc 264
              ||||||||||||||||||||
Sbjct: 171209 caccagctgccatgaacagc 171190
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>gb|AC116371.5| Mus musculus chromosome 17, clone RP24-228A1, complete sequence
          Length = 109222

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    tccttctttcatcttggcca 159
              ||||||||||||||||||||
Sbjct: 104840 tccttctttcatcttggcca 104859
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>emb|AL022101.1|HS845O24 Human DNA sequence from clone RP5-845O24 on chromosome 1p36.1-36.2
             Contains the 3' end of the gene for a novel protein
             similar to preferentially expressed antigen in melanoma
             (PRAME) (LOC65121), four genes for novel proteins similar
             to preferentially expressed antigen in melanoma (PRAME)
             (LOC343068, LOC65122, LOC343070 and LOC343071), a novel
             gene, a pseudogene similar to preferentially expressed
             antigen in melanoma (PRAME) and the gene for a novel
             protein similar to heterogeneous nuclear ribonucleoprotein
             C (C1/C2) (HNRPC) (LOC343069), complete sequence
          Length = 119198

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 328   tgtgcaccatttccctgaggcagc 351
             ||||| ||||||||||||||||||
Sbjct: 52213 tgtgctccatttccctgaggcagc 52190
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>emb|BX294152.1| Pirellula sp. strain 1 complete genome; segment 20/24
          Length = 304250

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 486    ccacccaaagtcagtggagc 505
              ||||||||||||||||||||
Sbjct: 199109 ccacccaaagtcagtggagc 199090
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>emb|CR854856.5| Human DNA sequence from clone RP13-299H21 on chromosome 1, complete
              sequence
          Length = 186712

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    tgtgcaccatttccctgaggcagc 351
              ||||| ||||||||||||||||||
Sbjct: 123612 tgtgctccatttccctgaggcagc 123589
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>emb|CR854858.22| Human DNA sequence from clone RP13-177J6 on chromosome 1, complete
              sequence
          Length = 168039

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 328    tgtgcaccatttccctgaggcagc 351
              ||||| ||||||||||||||||||
Sbjct: 138900 tgtgctccatttccctgaggcagc 138877


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,912,195
Number of Sequences: 3902068
Number of extensions: 4912195
Number of successful extensions: 81667
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81564
Number of HSP's gapped (non-prelim): 92
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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