ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags39e12 |
|---|---|
| Clone Library Name | barley_pub |
>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)| (Leucine-rich PPR motif-containing protein) Length = 1273 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/93 (25%), Positives = 42/93 (45%) Frame = -1 Query: 624 YQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFV 445 YQ ++++ +GDIEGA + +K + L+ ++R G + A+ L Sbjct: 79 YQRLIASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILTVMR 138 Query: 444 EKGGNPKPNTWEILATAYLKDNQLSEALSCLEK 346 + G P P+T+ L AY + + LEK Sbjct: 139 DAGIEPGPDTYLALLNAYAEKGDIDHVKQTLEK 171
>YN53_YEAST (P42842) Hypothetical 102.3 kDa protein in DAL82-RFA2 intergenic| region Length = 904 Score = 33.5 bits (75), Expect = 0.63 Identities = 13/35 (37%), Positives = 22/35 (62%) Frame = -1 Query: 417 TWEILATAYLKDNQLSEALSCLEKATAVKSASKWR 313 +W L+ AY K ++L EA SCL++A + + W+ Sbjct: 673 SWSNLSAAYTKMDKLKEAYSCLKRAISCDAQKNWK 707
>ATM_ASPOR (Q2U639) Serine/threonine-protein kinase tel1 (EC 2.7.11.1)| (DNA-damage checkpoint kinase tel1) (Telomere length regulation protein 1) (ATM homolog) Length = 2925 Score = 33.1 bits (74), Expect = 0.83 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 4/107 (3%) Frame = -1 Query: 558 EWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDN 379 EW K F K MN R ++ TL+ F+ GG P P+ TA K Sbjct: 154 EW-EKLMGFCLKIMNTQDYEDDRSHTGSDSRSTLDDFLGTGGTPTPSRSMPTLTAREKPK 212 Query: 378 Q----LSEALSCLEKATAVKSASKWRPRPTNVETLLAYFKEKNDTES 250 + +SEA+ C++ TA +A P + L+ Y K + T S Sbjct: 213 RDKGAISEAVVCIQLLTASVNAPVQEPAAKILHGLVGYVKSSHITGS 259
>RT36_BOVIN (P82908) Mitochondrial 28S ribosomal protein S36 (S36mt) (MRP-S36)| Length = 103 Score = 31.6 bits (70), Expect = 2.4 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = -1 Query: 519 MNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQLS 370 M +A SR VVK L RF ++ NPKPN E+L +A L + S Sbjct: 2 MGSKMASASRVVQVVKPHTPLIRFPDRRDNPKPNVSEVLRSAGLPSHTSS 51
>MTSA_STRGC (P42364) Metal ABC transporter substrate-binding lipoprotein| precursor (Coaggregation-mediating adhesin) Length = 310 Score = 31.2 bits (69), Expect = 3.1 Identities = 24/84 (28%), Positives = 38/84 (45%) Frame = -1 Query: 582 EGAELLYEEWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEIL 403 EG +++Y E ++ DP AW + E ++ AQ R +EK + K T+E Sbjct: 121 EGVDVIYLEGQNEKGKEDPH------AWLNLENGIIYAQNIAKRLIEKDPDNKA-TYEKN 173 Query: 402 ATAYLKDNQLSEALSCLEKATAVK 331 AY+ E L+ L+K K Sbjct: 174 LKAYI------EKLTALDKEAKEK 191
>TTC3_HUMAN (P53804) Tetratricopeptide repeat protein 3 (TPR repeat protein 3)| (TPR repeat protein D) Length = 2025 Score = 30.8 bits (68), Expect = 4.1 Identities = 16/57 (28%), Positives = 32/57 (56%) Frame = +3 Query: 21 KKKYRAIPHELSSGGSSNIQITSK*LKCSRAIH*SYHWCPSTITCLQPPKHRCQSRT 191 ++ +R I HE+++GG+ N+++ + LK PS+ QPPKH+ + ++ Sbjct: 392 ERDFRKINHEMANGGNQNLKVADEALKVDDCDCHPEFSPPSS----QPPKHKGKQKS 444
>MTSA_STRSA (P31304) Manganese ABC transporter substrate-binding lipoprotein| precursor (Adhesin B) (Saliva-binding protein) Length = 309 Score = 30.8 bits (68), Expect = 4.1 Identities = 24/84 (28%), Positives = 38/84 (45%) Frame = -1 Query: 582 EGAELLYEEWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEIL 403 +G +++Y E S+ DP AW + E ++ AQ R +EK + K T+E Sbjct: 120 DGVDVIYLEGQSEKGKEDPH------AWLNLENGIIYAQNIAKRLIEKDPDNKA-TYEKN 172 Query: 402 ATAYLKDNQLSEALSCLEKATAVK 331 AY+ E L+ L+K K Sbjct: 173 LKAYV------EKLTALDKEAKEK 190
>MAST1_RAT (Q810W7) Microtubule-associated serine/threonine-protein kinase 1 (EC| 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 30.8 bits (68), Expect = 4.1 Identities = 27/88 (30%), Positives = 38/88 (43%) Frame = +3 Query: 30 YRAIPHELSSGGSSNIQITSK*LKCSRAIH*SYHWCPSTITCLQPPKHRCQSRTCTLRSQ 209 YR+ P G SS + S A S+H PST+ L P HR Q R+ +S Sbjct: 1143 YRSTPDSAYLGASSQSSSPASSTPNSPASSASHHIRPSTLHGLSPKLHR-QYRSARCKSA 1201 Query: 210 HTLYF*VHSLTCRHSPCHSSP*NMPGES 293 + + L SP +SP +PG + Sbjct: 1202 GNIP--LSPLAHTPSPTQASPPPLPGHT 1227
>MAST1_HUMAN (Q9Y2H9) Microtubule-associated serine/threonine-protein kinase 1 (EC| 2.7.11.1) (Syntrophin-associated serine/threonine-protein kinase) Length = 1570 Score = 30.8 bits (68), Expect = 4.1 Identities = 27/88 (30%), Positives = 38/88 (43%) Frame = +3 Query: 30 YRAIPHELSSGGSSNIQITSK*LKCSRAIH*SYHWCPSTITCLQPPKHRCQSRTCTLRSQ 209 YR+ P G SS + S A S+H PST+ L P HR Q R+ +S Sbjct: 1141 YRSTPDSAYLGASSQSSSPASSTPNSPASSASHHIRPSTLHGLSPKLHR-QYRSARCKSA 1199 Query: 210 HTLYF*VHSLTCRHSPCHSSP*NMPGES 293 + + L SP +SP +PG + Sbjct: 1200 GNIP--LSPLAHTPSPTQASPPPLPGHT 1225
>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I| Length = 1261 Score = 30.8 bits (68), Expect = 4.1 Identities = 32/147 (21%), Positives = 69/147 (46%), Gaps = 2/147 (1%) Frame = -1 Query: 633 NLGYQEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYSREGFVVKAQQTLN 454 NL ++ S + +EG +++ + + S + +N L+ +++ G + KA+ + Sbjct: 1111 NLFQSQIESLIANDRIVEGIQIV-SDMKRYNVSLNAYIVNALIKGFTKVGMISKARYYFD 1169 Query: 453 RFVEKGGNPK-PNTWEILATAYLKDNQLSEALSCLEKATAVKSASKWRPRPTNVETLL-A 280 +G + K P+T+E + AYL N +A+ +E+ +K P + +L+ + Sbjct: 1170 LLECEGMSGKEPSTYENMVRAYLSVNDGRKAMEIVEQ---LKRKRYPLPVVNRISSLVNS 1226 Query: 279 YFKEKNDTESVDRLMSVLRSRGCAENE 199 + +K S++ S L S G A + Sbjct: 1227 HMGQKPKRRSLNTSHSSLASLGNASTQ 1253
>ETOL1_ARATH (Q9ZQX6) ETO1-like protein 1 (Ethylene overproducer 1-like protein| 1) Length = 888 Score = 30.4 bits (67), Expect = 5.4 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Frame = -1 Query: 648 FKTIHNLGYQEVLSALVRLGDIEGAEL-LYEEWASKSSSFDPKTMNILLAW-YSREGFVV 475 F+T NLG+ + L RLG I+G L YE+ +S SS P L W Y F Sbjct: 404 FETAFNLGHVYSATGLARLGYIQGHRLWAYEKLSSVISSVSPP-----LGWMYQERSFYC 458 Query: 474 KAQQTL 457 + + L Sbjct: 459 EGDKKL 464
>TREA_SHIFL (Q83RP6) Periplasmic trehalase precursor (EC 3.2.1.28)| (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Length = 565 Score = 30.4 bits (67), Expect = 5.4 Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 6/75 (8%) Frame = -1 Query: 492 REGFVVKAQQT--LNRFVEKGGNPKPNTW-EILATAYLKDNQ-LSEALSCLEKATAV--K 331 +E VVK Q + LNR+ + P+P +W E +ATA N+ +E L A A Sbjct: 253 QEKRVVKLQDSTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWD 312 Query: 330 SASKWRPRPTNVETL 286 +S+W P + TL Sbjct: 313 FSSRWMDNPQQLNTL 327
>DNAK2_SYNP6 (Q5N1J4) Chaperone protein dnaK 2 (Heat shock protein 70 2) (Heat| shock 70 kDa protein 2) (HSP70 2) Length = 634 Score = 30.0 bits (66), Expect = 7.0 Identities = 22/89 (24%), Positives = 37/89 (41%) Frame = -1 Query: 483 FVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQLSEALSCLEKATAVKSASKWRPRP 304 FV+ A LN + G+ K + I + L DN++ + E A + R Sbjct: 470 FVIDANGILNVTAKDKGSGKEQSISITGASTLSDNEVDRMVKDAEANAAADKERRERIDL 529 Query: 303 TNVETLLAYFKEKNDTESVDRLMSVLRSR 217 N L Y EK +E D++ + +S+ Sbjct: 530 KNQADTLVYQSEKQLSELGDKISADEKSK 558
>TTC5_HUMAN (Q8N0Z6) Tetratricopeptide repeat protein 5 (TPR repeat protein 5)| Length = 440 Score = 30.0 bits (66), Expect = 7.0 Identities = 29/111 (26%), Positives = 50/111 (45%), Gaps = 5/111 (4%) Frame = -1 Query: 471 AQQTLNRF-----VEKGGNPKPNTWEILATAYLKDNQLSEALSCLEKATAVKSASKWRPR 307 +QQ L+ + V++ + P+ AT + + EAL +A A+ A W P Sbjct: 203 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSRAAALDPA--W-PE 259 Query: 306 PTNVETLLAYFKEKNDTESVDRLMSVLRSRGCAENEEYKSLIDTYALAVAG 154 P E L F +DRL S+L S+G + ++ +S++ + A G Sbjct: 260 PRQREQQLLEF--------LDRLTSLLESKGKVKTKKLQSMLGSLRPAHLG 302
>PKSM_BACSU (P40872) Putative polyketide synthase pksM| Length = 4262 Score = 30.0 bits (66), Expect = 7.0 Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 3/148 (2%) Frame = -1 Query: 663 WYKATFKTIHNLGY-QEVLSALVRLGDIEGAELLYEEWASKSSSFDPKTMNILLAWYSRE 487 W + T + + GY ++V +LVR E ELL+ EW +K + L + Sbjct: 1836 WIRQTSEFLLQHGYLKKVGDSLVRKDQAEDIELLWLEWNAKKEKW--------LKDSETK 1887 Query: 486 GFVVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQLSEALSCLEKATAVKSASKWRPR 307 VV A+ L P T ++ AT + + E + + K V Sbjct: 1888 AMVVLAEAMLQAL------PDILTGKVPATDIMFPHSSMELVEGIYKHNQVADYF----N 1937 Query: 306 PTNVETLLAYFKE--KNDTESVDRLMSV 229 +TLLAY E K+D E+ R+M + Sbjct: 1938 KVLADTLLAYLDERLKHDPEASIRIMEI 1965
>EVPL_MOUSE (Q9D952) Envoplakin (p210) (210 kDa cornified envelope precursor| protein) Length = 2035 Score = 30.0 bits (66), Expect = 7.0 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%) Frame = -1 Query: 480 VVKAQQTLNRFVEKGGNPKPNTWEILATAYLKDNQLSEALSCLEKATAVKSASKWRPRP- 304 +VKA QTL +E+ + E +A + L +A+S +E VK K P Sbjct: 1089 MVKAAQTLRLQIEEDAARRKGAKETVAKIQARIKDLEQAISSVEPKVIVKEVKKVEQDPG 1148 Query: 303 -----TNVETLLAYFKEKNDTESVDRLMSVLRSR 217 + + +LL +EKN+ ++ R + L+ + Sbjct: 1149 LLKEASRLRSLLE--EEKNNNVALARELQELQEK 1180
>TREA_ECO57 (Q8XDH7) Periplasmic trehalase precursor (EC 3.2.1.28)| (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Length = 561 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -1 Query: 492 REGFVVKAQQ--TLNRFVEKGGNPKPNTW-EILATAYLKDNQ-LSEALSCLEKATAV--K 331 +E VVK Q LNR+ + P+P +W E +ATA N+ +E L A A Sbjct: 249 QEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWD 308 Query: 330 SASKWRPRPTNVETL 286 +S+W P + TL Sbjct: 309 FSSRWMDNPQQLNTL 323
>TREA_ECOLI (P13482) Periplasmic trehalase precursor (EC 3.2.1.28)| (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Length = 565 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -1 Query: 492 REGFVVKAQQ--TLNRFVEKGGNPKPNTW-EILATAYLKDNQ-LSEALSCLEKATAV--K 331 +E VVK Q LNR+ + P+P +W E +ATA N+ +E L A A Sbjct: 253 QEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWD 312 Query: 330 SASKWRPRPTNVETL 286 +S+W P + TL Sbjct: 313 FSSRWMDNPQQLNTL 327
>TREA_ECOL6 (Q8CW46) Periplasmic trehalase precursor (EC 3.2.1.28)| (Alpha,alpha-trehalase) (Alpha,alpha-trehalose glucohydrolase) Length = 565 Score = 29.6 bits (65), Expect = 9.1 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%) Frame = -1 Query: 492 REGFVVKAQQ--TLNRFVEKGGNPKPNTW-EILATAYLKDNQ-LSEALSCLEKATAV--K 331 +E VVK Q LNR+ + P+P +W E +ATA N+ +E L A A Sbjct: 253 QEKRVVKLQDGTLLNRYWDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWD 312 Query: 330 SASKWRPRPTNVETL 286 +S+W P + TL Sbjct: 313 FSSRWMDNPQQLNTL 327
>SEC_ARATH (Q9M8Y0) Probable UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT) Length = 977 Score = 29.6 bits (65), Expect = 9.1 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = -1 Query: 420 NTWEILATAYLKDNQLSEALSCLEKATAV 334 + W LA+AY++ +LSEA C ++A ++ Sbjct: 156 DAWSNLASAYMRKGRLSEATQCCQQALSL 184
>RT36_HUMAN (P82909) Mitochondrial 28S ribosomal protein S36 (S36mt) (MRP-S36)| Length = 103 Score = 29.6 bits (65), Expect = 9.1 Identities = 19/44 (43%), Positives = 23/44 (52%) Frame = -1 Query: 519 MNILLAWYSREGFVVKAQQTLNRFVEKGGNPKPNTWEILATAYL 388 M +A SR VVK L RF ++ NPKPN E L +A L Sbjct: 2 MGSKMASASRVVQVVKPHTPLIRFPDRRDNPKPNVSEALRSAGL 45 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,542,840 Number of Sequences: 219361 Number of extensions: 2189794 Number of successful extensions: 5267 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 5118 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5264 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6912958834 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
