ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38p01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LET23_CAEEL (P24348) Receptor tyrosine-protein kinase let-23 pre... 30 1.7
2ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associate... 28 8.4

>LET23_CAEEL (P24348) Receptor tyrosine-protein kinase let-23 precursor (EC|
           2.7.10.1) (Lethal protein 23)
          Length = 1367

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -1

Query: 221 VQFLDRIEQLRRXALIKRQSSQKIFWPEYSVVHHD 117
           + F D +E++R   +I R + QKI +P   V++ D
Sbjct: 150 INFFDNLEEIRGSLIIYRANIQKISFPRLRVIYGD 184



to top

>ASPM_CANFA (P62286) Abnormal spindle-like microcephaly-associated protein|
           homolog (Fragment)
          Length = 3452

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = +3

Query: 93  PIHRESKSIMMNYR-ILRPEYFL 158
           P+H ESKS+  NYR IL P+ F+
Sbjct: 344 PLHLESKSVHENYRKILSPDSFI 366


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,152,608
Number of Sequences: 219361
Number of extensions: 482406
Number of successful extensions: 1095
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 80,573,946
effective HSP length: 49
effective length of database: 69,825,257
effective search space used: 1675806168
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top