ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39e07 |
|---|---|
| Clone Library Name | barley_pub |
>RIB1_MOUSE (Q91YQ5) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 67 kDa subunit precursor (EC 2.4.1.119) (Ribophorin I) (RPN-I) Length = 608 Score = 114 bits (286), Expect = 2e-25 Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 5/156 (3%) Frame = -2 Query: 676 PRFPLFGGWHCTFTIGYGMPLQDFLFESADG----RRFANLTFGSPLLNTVVDNLTIKVV 509 PRFPLFGGW + +GY +P ++L+ D RF + F V+D+LT+K++ Sbjct: 319 PRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQ----VIDSLTVKII 374 Query: 508 LPEGSKSPQAVVPFETDQHL-ETSYSYLDVVGRTTVVIKKKNVVGEHNVPFQVYYEFSPI 332 LPEG+K+ Q P++ + E Y+YLD GR +V KKN+V +H V+Y F+ + Sbjct: 375 LPEGAKNIQVDSPYDISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKV 434 Query: 331 FMLAEPLMLITAALLFFTACIAYLHMDLSIAKSHAS 224 ML EPL+++ A + F I Y+ +D SI K A+ Sbjct: 435 LMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAA 470
>RIB1_HUMAN (P04843) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 67 kDa subunit precursor (EC 2.4.1.119) (Ribophorin I) (RPN-I) Length = 607 Score = 114 bits (285), Expect = 3e-25 Identities = 59/156 (37%), Positives = 90/156 (57%), Gaps = 5/156 (3%) Frame = -2 Query: 676 PRFPLFGGWHCTFTIGYGMPLQDFLFESADG----RRFANLTFGSPLLNTVVDNLTIKVV 509 PRFPLFGGW + +GY +P ++L+ D RF + F V+D+LT+K++ Sbjct: 318 PRFPLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQ----VIDSLTVKII 373 Query: 508 LPEGSKSPQAVVPFETDQHL-ETSYSYLDVVGRTTVVIKKKNVVGEHNVPFQVYYEFSPI 332 LPEG+K+ + P+E + E Y+YLD GR +V KKN+V +H V+Y F+ + Sbjct: 374 LPEGAKNIEIDSPYEISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKV 433 Query: 331 FMLAEPLMLITAALLFFTACIAYLHMDLSIAKSHAS 224 ML EPL+++ A + F I Y+ +D SI K A+ Sbjct: 434 LMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAA 469
>RIB1_RAT (P07153) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase 67 kDa subunit precursor (EC 2.4.1.119) (Ribophorin I) (RPN-I) Length = 605 Score = 111 bits (277), Expect = 2e-24 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 5/156 (3%) Frame = -2 Query: 676 PRFPLFGGWHCTFTIGYGMPLQDFLFESADG----RRFANLTFGSPLLNTVVDNLTIKVV 509 PRF LFGGW + +GY +P ++L+ D RF + F V+D+LT+K++ Sbjct: 316 PRFGLFGGWKTHYIVGYNLPSYEYLYNLGDQYALKMRFVDHVFDEQ----VIDSLTVKII 371 Query: 508 LPEGSKSPQAVVPFETDQHL-ETSYSYLDVVGRTTVVIKKKNVVGEHNVPFQVYYEFSPI 332 LPEG+K+ Q P++ + E Y+YLD GR +V KKN+V +H V+Y F+ + Sbjct: 372 LPEGAKNIQVDSPYDISRAPDELHYTYLDTFGRPVIVAYKKNLVEQHIQDIVVHYTFNKV 431 Query: 331 FMLAEPLMLITAALLFFTACIAYLHMDLSIAKSHAS 224 ML EPL+++ A + F I Y+ +D SI K A+ Sbjct: 432 LMLQEPLLVVAAFYILFFTVIIYVRLDFSITKDPAA 467
>OSTA_YEAST (P41543) Dolichyl-diphosphooligosaccharide--protein| glycosyltransferase alpha subunit precursor (EC 2.4.1.119) (Oligosaccharyl transferase alpha subunit) (Oligosaccharyl transferase 64 kDa subunit) Length = 476 Score = 65.5 bits (158), Expect = 1e-10 Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 6/140 (4%) Frame = -2 Query: 676 PRFPLFGGWHCTFTIGYGMPLQDFLFES--ADGRRFANLTFGSPLLNTVVDNLTIKVVLP 503 PRFP+FGGW+ FT+G+ L DFL S +D + A++ + +TV DN+ + V LP Sbjct: 325 PRFPIFGGWNYNFTVGWTNKLSDFLHVSSGSDEKFVASIPILNGPPDTVYDNVELSVFLP 384 Query: 502 EGSK--SPQAVVPFETDQHLETSYSYLDV-VGRTTVVIKKKNVVGE-HNVPFQVYYEFSP 335 EG++ + VPF T+ +ET SY D+ G + +N++ + N + Y++ Sbjct: 385 EGAEIFDIDSPVPF-TNVSIETQKSYFDLNKGHVKLTFSYRNLISQVANGQVLIKYDYPK 443 Query: 334 IFMLAEPLMLITAALLFFTA 275 +PL + A FTA Sbjct: 444 SSFFKKPLSI---ACYIFTA 460
>OSTA_SCHPO (Q10176) Putative dolichyl-diphosphooligosaccharide--protein| glycosyltransferase alpha subunit precursor (EC 2.4.1.119) (Oligosaccharyl transferase alpha subunit) Length = 450 Score = 52.4 bits (124), Expect = 1e-06 Identities = 37/142 (26%), Positives = 68/142 (47%), Gaps = 3/142 (2%) Frame = -2 Query: 676 PRFPLFGGWHCTFTIGYGMPLQDFLFESADGRRFANLTFGSPLLNTVVDNLTIKVVLPEG 497 PR+P+FGGW+ F + + MP ++F S + R + ++ + + + V PEG Sbjct: 309 PRYPVFGGWNYLFQLDWKMPYEEFR-SSKNRREYLDIPLAWSPGDMIYEKAVWSYVFPEG 367 Query: 496 SKSPQAVVPFE-TDQHLETSYSYLDVVGRTTVVIKKKNVV-GEHNVPFQVYYEF-SPIFM 326 + + + +P E ++ ++ + +LD +GR + NV G + + YE+ S F Sbjct: 368 ATNIEIEMPVEISNSNVTKIHKFLDTLGRQVFTYEALNVTDGVPSDIVHISYEYNSSAFF 427 Query: 325 LAEPLMLITAALLFFTACIAYL 260 L + I LL A AY+ Sbjct: 428 LR---IAIITTLLILLAAAAYM 446
>ATP6_STRLI (P50012) ATP synthase a chain (EC 3.6.3.14) (ATPase protein 6)| Length = 281 Score = 32.3 bits (72), Expect = 1.4 Identities = 38/131 (29%), Positives = 52/131 (39%), Gaps = 3/131 (2%) Frame = -2 Query: 646 CTFTIGYGMP---LQDFLFESADGRRFANLTFGSPLLNTVVDNLTIKVVLPEGSKSPQAV 476 C G G P L FLFE G +NL F P+L ++ ++ I + P+ V Sbjct: 23 CHIFDGCGFPSPGLHSFLFEPLWGDHDSNLYFNKPMLLALLGSIVIVGFFWAAFRKPK-V 81 Query: 475 VPFETDQHLETSYSYLDVVGRTTVVIKKKNVVGEHNVPFQVYYEFSPIFMLAEPLMLITA 296 VP + E Y ++ G I KK GE VP V F + +I Sbjct: 82 VPGKLQMVAEAGYDFIR-RGVVYETIGKKE--GEKYVPLVVSLFF--FVWMMNLWSIIPV 136 Query: 295 ALLFFTACIAY 263 A T+ IAY Sbjct: 137 AQFPVTSIIAY 147
>SAHH_HALSA (Q9HN50) Adenosylhomocysteinase (EC 3.3.1.1)| (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) Length = 427 Score = 31.6 bits (70), Expect = 2.3 Identities = 25/95 (26%), Positives = 40/95 (42%) Frame = -2 Query: 601 FESADGRRFANLTFGSPLLNTVVDNLTIKVVLPEGSKSPQAVVPFETDQHLETSYSYLDV 422 +E ADGRR LN + + + + P G P V ++ S+ V Sbjct: 329 YELADGRR----------LNVLAEGRLVNLASPIGLGHPVGV--------MDQSFGVQAV 370 Query: 421 VGRTTVVIKKKNVVGEHNVPFQVYYEFSPIFMLAE 317 R V +++ G HNVP ++ E + I + AE Sbjct: 371 CVRELVANREEYAAGVHNVPDELDIEIAEIKLAAE 405
>KINB1_ARATH (Q84VQ1) SNF1-related protein kinase regulatory subunit beta-1| (AKIN beta1) (AKINB1) Length = 283 Score = 30.4 bits (67), Expect = 5.2 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 15/70 (21%) Frame = +3 Query: 501 SGSTTLMVRLSTTVFSRGDPNVRLAKRRPSADSNRKSCSGIP---------------*PM 635 +GS V S+ + GDP+ R RRPS+DS S G P P+ Sbjct: 13 AGSGGADVTSSSARSNGGDPSARSRHRRPSSDSMSSSPPGSPARSPSPFLFAPQVPVAPL 72 Query: 636 VKVQCHPPNN 665 + PPNN Sbjct: 73 QRANAPPPNN 82
>ACPD2_CLOAB (Q97DQ1) Putative acyl carrier protein phosphodiesterase 2 (EC| 3.1.4.14) (ACP phosphodiesterase 2) Length = 200 Score = 30.0 bits (66), Expect = 6.8 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Frame = -2 Query: 472 PFET----DQHLETSYSYLDVVGRTTVVIKKKNVVGE 374 PFE D++L T + +L + TT+V +K +VVGE Sbjct: 144 PFEMYEMGDRYLRTIFGFLGITDFTTIVAEKLDVVGE 180
>DYHC_NEUCR (P45443) Dynein heavy chain, cytosolic (DYHC)| Length = 4367 Score = 29.6 bits (65), Expect = 8.9 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Frame = -2 Query: 619 PLQDFLFESADGRRFANL-TFGSPLLNTVVDNLTIKVVLPEGSKSPQAVVPFET-DQHLE 446 PL+D A G + A L +FGSP L+ + V +P+G ++T QH+ Sbjct: 2515 PLKD---RKAFGDKVAGLASFGSPPLDGTSSLIDFTVTMPQGE--------WQTWQQHVP 2563 Query: 445 TSYSYLDVVGRTTVVIKKKNVVGEHNVPFQVYYEFSPIFMLAEP 314 T V +T VVI + + +V + E P+ + P Sbjct: 2564 TIEVNTHSVTQTDVVIPTLDTIRHEDVLYSWLAEHKPLLLCGPP 2607 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,751,642 Number of Sequences: 219361 Number of extensions: 1802443 Number of successful extensions: 4979 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4800 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4972 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
