ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags39e04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472569.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1881 Score = 297 bits (150), Expect = 3e-77 Identities = 222/246 (90%) Strand = Plus / Minus Query: 518 ttcctttactgcaatggttccttctatcacttcaccaaatacagaccatcttccgacaga 577 ||||||| || ||| || ||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 1467 ttcctttgctacaacggatccttctatcacttcaccaaacacagaccatctcccaacaga 1408 Query: 578 tgtgatcttcgcatctgctgatgttcctagcatactatctggagcaatgacaagaacctg 637 |||||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 1407 tgtgatcttcacatctgctgatgttcctaacatgctatcaggagcaatgacaagcacctg 1348 Query: 638 gatataccctttggtatgtccaaccagatgaacaccatcagtagctatttcagtgatcca 697 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1347 gatatatcctttggtatgtccaaccaaatgaacaccatcagtagctatttcagtgatcca 1288 Query: 698 tatcctctccactttgcctttcagtccttcgtatggtgaaaaagcttcaaaaactgacgt 757 ||||||||| |||||||||| || ||||| ||| |||||||| | || |||||||| || Sbjct: 1287 tatcctctctactttgccttccattccttggtagggtgaaaatgactcgaaaactgaggt 1228 Query: 758 caattc 763 |||||| Sbjct: 1227 caattc 1222 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Minus Query: 141 actgttgtggcaaaacttacggccaaaccacccca 175 ||||| |||||||| || ||||||||||||||||| Sbjct: 1829 actgtcgtggcaaagctcacggccaaaccacccca 1795
>dbj|AK101879.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070J24, full insert sequence Length = 1961 Score = 297 bits (150), Expect = 3e-77 Identities = 222/246 (90%) Strand = Plus / Minus Query: 518 ttcctttactgcaatggttccttctatcacttcaccaaatacagaccatcttccgacaga 577 ||||||| || ||| || ||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 1452 ttcctttgctacaacggatccttctatcacttcaccaaacacagaccatctcccaacaga 1393 Query: 578 tgtgatcttcgcatctgctgatgttcctagcatactatctggagcaatgacaagaacctg 637 |||||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 1392 tgtgatcttcacatctgctgatgttcctaacatgctatcaggagcaatgacaagcacctg 1333 Query: 638 gatataccctttggtatgtccaaccagatgaacaccatcagtagctatttcagtgatcca 697 |||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1332 gatatatcctttggtatgtccaaccaaatgaacaccatcagtagctatttcagtgatcca 1273 Query: 698 tatcctctccactttgcctttcagtccttcgtatggtgaaaaagcttcaaaaactgacgt 757 ||||||||| |||||||||| || ||||| ||| |||||||| | || |||||||| || Sbjct: 1272 tatcctctctactttgccttccattccttggtagggtgaaaatgactcgaaaactgaggt 1213 Query: 758 caattc 763 |||||| Sbjct: 1212 caattc 1207 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Minus Query: 141 actgttgtggcaaaacttacggccaaaccacccca 175 ||||| |||||||| || ||||||||||||||||| Sbjct: 1814 actgtcgtggcaaagctcacggccaaaccacccca 1780
>emb|AL606706.3|OSJN00063 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0086G13, complete sequence Length = 127952 Score = 184 bits (93), Expect = 3e-43 Identities = 132/145 (91%) Strand = Plus / Plus Query: 518 ttcctttactgcaatggttccttctatcacttcaccaaatacagaccatcttccgacaga 577 ||||||| || ||| || ||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 35187 ttcctttgctacaacggatccttctatcacttcaccaaacacagaccatctcccaacaga 35246 Query: 578 tgtgatcttcgcatctgctgatgttcctagcatactatctggagcaatgacaagaacctg 637 |||||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 35247 tgtgatcttcacatctgctgatgttcctaacatgctatcaggagcaatgacaagcacctg 35306 Query: 638 gatataccctttggtatgtccaacc 662 |||||| |||||||||||||||||| Sbjct: 35307 gatatatcctttggtatgtccaacc 35331 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 660 accagatgaacaccatcagtagctatttcagtgatccatatcctctccactttgcctttc 719 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 35436 accaaatgaacaccatcagtagctatttcagtgatccatatcctctctactttgccttcc 35495 Query: 720 agtccttcgtatggtgaaaaagcttcaaaaactgacgtcaattc 763 | ||||| ||| |||||||| | || |||||||| |||||||| Sbjct: 35496 attccttggtagggtgaaaatgactcgaaaactgaggtcaattc 35539 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 141 actgttgtggcaaaacttacggccaaaccacccca 175 ||||| |||||||| || ||||||||||||||||| Sbjct: 34825 actgtcgtggcaaagctcacggccaaaccacccca 34859
>emb|AL606626.3|OSJN00050 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088K19, complete sequence Length = 156002 Score = 184 bits (93), Expect = 3e-43 Identities = 132/145 (91%) Strand = Plus / Plus Query: 518 ttcctttactgcaatggttccttctatcacttcaccaaatacagaccatcttccgacaga 577 ||||||| || ||| || ||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 122734 ttcctttgctacaacggatccttctatcacttcaccaaacacagaccatctcccaacaga 122793 Query: 578 tgtgatcttcgcatctgctgatgttcctagcatactatctggagcaatgacaagaacctg 637 |||||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 122794 tgtgatcttcacatctgctgatgttcctaacatgctatcaggagcaatgacaagcacctg 122853 Query: 638 gatataccctttggtatgtccaacc 662 |||||| |||||||||||||||||| Sbjct: 122854 gatatatcctttggtatgtccaacc 122878 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 660 accagatgaacaccatcagtagctatttcagtgatccatatcctctccactttgcctttc 719 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 122983 accaaatgaacaccatcagtagctatttcagtgatccatatcctctctactttgccttcc 123042 Query: 720 agtccttcgtatggtgaaaaagcttcaaaaactgacgtcaattc 763 | ||||| ||| |||||||| | || |||||||| |||||||| Sbjct: 123043 attccttggtagggtgaaaatgactcgaaaactgaggtcaattc 123086 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 141 actgttgtggcaaaacttacggccaaaccacccca 175 ||||| |||||||| || ||||||||||||||||| Sbjct: 122372 actgtcgtggcaaagctcacggccaaaccacccca 122406
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 184 bits (93), Expect = 3e-43 Identities = 132/145 (91%) Strand = Plus / Plus Query: 518 ttcctttactgcaatggttccttctatcacttcaccaaatacagaccatcttccgacaga 577 ||||||| || ||| || ||||||||||||||||||||| ||||||||||| || ||||| Sbjct: 21600645 ttcctttgctacaacggatccttctatcacttcaccaaacacagaccatctcccaacaga 21600704 Query: 578 tgtgatcttcgcatctgctgatgttcctagcatactatctggagcaatgacaagaacctg 637 |||||||||| |||||||||||||||||| ||| ||||| |||||||||||||| ||||| Sbjct: 21600705 tgtgatcttcacatctgctgatgttcctaacatgctatcaggagcaatgacaagcacctg 21600764 Query: 638 gatataccctttggtatgtccaacc 662 |||||| |||||||||||||||||| Sbjct: 21600765 gatatatcctttggtatgtccaacc 21600789 Score = 119 bits (60), Expect = 1e-23 Identities = 93/104 (89%) Strand = Plus / Plus Query: 660 accagatgaacaccatcagtagctatttcagtgatccatatcctctccactttgcctttc 719 |||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct: 21600894 accaaatgaacaccatcagtagctatttcagtgatccatatcctctctactttgccttcc 21600953 Query: 720 agtccttcgtatggtgaaaaagcttcaaaaactgacgtcaattc 763 | ||||| ||| |||||||| | || |||||||| |||||||| Sbjct: 21600954 attccttggtagggtgaaaatgactcgaaaactgaggtcaattc 21600997 Score = 46.1 bits (23), Expect = 0.17 Identities = 32/35 (91%) Strand = Plus / Plus Query: 141 actgttgtggcaaaacttacggccaaaccacccca 175 ||||| |||||||| || ||||||||||||||||| Sbjct: 21600283 actgtcgtggcaaagctcacggccaaaccacccca 21600317
>gb|AY105923.1| Zea mays PCO122658 mRNA sequence Length = 985 Score = 111 bits (56), Expect = 3e-21 Identities = 185/228 (81%) Strand = Plus / Minus Query: 536 tccttctatcacttcaccaaatacagaccatcttccgacagatgtgatcttcgcatctgc 595 |||||||| |||| |||| || || ||||||| ||||||||| ||||||||||| || || Sbjct: 629 tccttctaccactacaccgaagacggaccatcgtccgacagacgtgatcttcgcgtccgc 570 Query: 596 tgatgttcctagcatactatctggagcaatgacaagaacctggatataccctttggtatg 655 || ||||| | ||| ||||| |||||| | || || |||||||| || || |||||||| Sbjct: 569 ggacgttcccaacatgctatcaggagcagttaccagcacctggatgtatcccttggtatg 510 Query: 656 tccaaccagatgaacaccatcagtagctatttcagtgatccatatcctctccactttgcc 715 ||| ||||| |||||||| || | || || || |||||||| ||| |||| |||||||| Sbjct: 509 tccgaccaggtgaacaccgtcggacgcaatctcggtgatccagatcttctctactttgcc 450 Query: 716 tttcagtccttcgtatggtgaaaaagcttcaaaaactgacgtcaattc 763 || || ||||| |||||| ||||| | ||| || ||||| |||||||| Sbjct: 449 ttccattccttggtatggcgaaaacgattcgaagactgaagtcaattc 402
>ref|NM_105867.2| Arabidopsis thaliana catalytic/ iron ion binding AT1G72090 mRNA, complete cds Length = 1976 Score = 79.8 bits (40), Expect = 1e-11 Identities = 133/164 (81%) Strand = Plus / Minus Query: 543 atcacttcaccaaatacagaccatcttccgacagatgtgatcttcgcatctgctgatgtt 602 |||||||| |||||||| |||||||| || |||||||| ||| |||| ||||| || Sbjct: 1502 atcacttccccaaatactgaccatctccccacagatgttatcctcgccatagctgaagtc 1443 Query: 603 cctagcatactatctggagcaatgacaagaacctggatataccctttggtatgtccaacc 662 || |||||||| ||||| || | || | ||||| | ||| || || |||||||||||| Sbjct: 1442 ccaagcatactttctggtccagtaactaagacctgtacatatcccttcgtatgtccaacc 1383 Query: 663 agatgaacaccatcagtagctatttcagtgatccatatcctctc 706 | ||||| ||||||||||||| |||||| |||||||||||||| Sbjct: 1382 aaatgaattccatcagtagctacttcagttatccatatcctctc 1339
>gb|AF367274.1|AF367274 Arabidopsis thaliana At1g72090/F28P5_4 mRNA, complete cds Length = 1977 Score = 79.8 bits (40), Expect = 1e-11 Identities = 133/164 (81%) Strand = Plus / Minus Query: 543 atcacttcaccaaatacagaccatcttccgacagatgtgatcttcgcatctgctgatgtt 602 |||||||| |||||||| |||||||| || |||||||| ||| |||| ||||| || Sbjct: 1502 atcacttccccaaatactgaccatctccccacagatgttatcctcgccatagctgaagtc 1443 Query: 603 cctagcatactatctggagcaatgacaagaacctggatataccctttggtatgtccaacc 662 || |||||||| ||||| || | || | ||||| | ||| || || |||||||||||| Sbjct: 1442 ccaagcatactttctggtccagtaactaagacctgtacatatcccttcgtatgtccaacc 1383 Query: 663 agatgaacaccatcagtagctatttcagtgatccatatcctctc 706 | ||||| ||||||||||||| |||||| |||||||||||||| Sbjct: 1382 aaatgaattccatcagtagctacttcagttatccatatcctctc 1339
>gb|BT002712.1| Arabidopsis thaliana At1g72090/F28P5_4 gene, complete cds Length = 1806 Score = 79.8 bits (40), Expect = 1e-11 Identities = 133/164 (81%) Strand = Plus / Minus Query: 543 atcacttcaccaaatacagaccatcttccgacagatgtgatcttcgcatctgctgatgtt 602 |||||||| |||||||| |||||||| || |||||||| ||| |||| ||||| || Sbjct: 1460 atcacttccccaaatactgaccatctccccacagatgttatcctcgccatagctgaagtc 1401 Query: 603 cctagcatactatctggagcaatgacaagaacctggatataccctttggtatgtccaacc 662 || |||||||| ||||| || | || | ||||| | ||| || || |||||||||||| Sbjct: 1400 ccaagcatactttctggtccagtaactaagacctgtacatatcccttcgtatgtccaacc 1341 Query: 663 agatgaacaccatcagtagctatttcagtgatccatatcctctc 706 | ||||| ||||||||||||| |||||| |||||||||||||| Sbjct: 1340 aaatgaattccatcagtagctacttcagttatccatatcctctc 1297
>gb|BT013138.1| Lycopersicon esculentum clone 114440F, mRNA sequence Length = 2084 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Minus Query: 654 tgtccaaccagatgaacaccatcagtagctatttcagtgatccatatcctctccactttg 713 |||||||||| |||||| ||||| | ||||| ||||| |||||||||||||| ||||| Sbjct: 1371 tgtccaaccaaatgaaccccatctgaagctacgtcagtaatccatatcctctctactttt 1312 Query: 714 cctt 717 |||| Sbjct: 1311 cctt 1308
>gb|AC069273.4|AC069273 Arabidopsis thaliana chromosome 1 BAC F28P5 genomic sequence, complete sequence Length = 38629 Score = 54.0 bits (27), Expect = 7e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 672 ccatcagtagctatttcagtgatccatatcctctc 706 ||||||||||||| |||||| |||||||||||||| Sbjct: 15217 ccatcagtagctacttcagttatccatatcctctc 15251
>dbj|AK221306.1| Arabidopsis thaliana mRNA for hypothetical protein, partial cds, clone: RAFL25-02-C21 Length = 506 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 aaacaaaaaattacagttacaa 82 |||||||||||||||||||||| Sbjct: 456 aaacaaaaaattacagttacaa 435
>gb|AC007060.3|T5I8 Arabidopsis thaliana chromosome 1 BAC T5I8 sequence, complete sequence Length = 96183 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Minus Query: 61 aaacaaaaaattacagttacaa 82 |||||||||||||||||||||| Sbjct: 15930 aaacaaaaaattacagttacaa 15909
>gb|AC009243.3|AC009243 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence Length = 110565 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 61 aaacaaaaaattacagttacaa 82 |||||||||||||||||||||| Sbjct: 85733 aaacaaaaaattacagttacaa 85754
>gb|AC135587.3| Homo sapiens 3 BAC RP11-309B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 71577 Score = 44.1 bits (22), Expect = 0.67 Identities = 22/22 (100%) Strand = Plus / Plus Query: 634 cctggatataccctttggtatg 655 |||||||||||||||||||||| Sbjct: 12371 cctggatataccctttggtatg 12392
>ref|XM_419622.1| PREDICTED: Gallus gallus similar to solute carrier family 22 member 2; solute carrier family 22, member 2 (LOC421584), mRNA Length = 1735 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 149 ggcaaaacttacggccaaacc 169 ||||||||||||||||||||| Sbjct: 535 ggcaaaacttacggccaaacc 515 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,939,652 Number of Sequences: 3902068 Number of extensions: 6939652 Number of successful extensions: 114653 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114585 Number of HSP's gapped (non-prelim): 68 length of query: 763 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 740 effective length of database: 17,143,297,704 effective search space: 12686040300960 effective search space used: 12686040300960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
