ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39d24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016572.1| Zea mays clone Contig405 mRNA sequence 88 3e-14
2gb|AY110043.1| Zea mays CL5496_1 mRNA sequence 88 3e-14
3ref|XM_474393.1| Oryza sativa (japonica cultivar-group), predic... 70 7e-09
4ref|XM_474324.1| Oryza sativa (japonica cultivar-group), predic... 62 2e-06
5dbj|AK102124.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 2e-06
6emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4,... 48 0.025
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.025
8emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 48 0.025
9emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 48 0.025
10gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete... 44 0.39
11gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E... 44 0.39
12emb|BX072530.5| Zebrafish DNA sequence from clone DKEY-221K19, c... 44 0.39
13gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 ... 44 0.39
14gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, comple... 42 1.5
15gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 42 1.5
16gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.0
17emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4,... 40 6.0
18gb|AC010501.7| Homo sapiens chromosome 5 clone CTD-2377O17, comp... 40 6.0
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
20gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, co... 40 6.0
21gb|AC116337.2| Homo sapiens chromosome 5 clone CTD-2503O16, comp... 40 6.0
22dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
23dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
24emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 6.0 
>gb|BT016572.1| Zea mays clone Contig405 mRNA sequence
          Length = 1144

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 146/181 (80%)
 Strand = Plus / Minus

                                                                       
Query: 267 catcatatgtcggctgagaggaagttatcagacaaggtaaccttctcgcccaacttgaac 326
           ||||||||||| || |  ||||||||  ||||||||| ||||||||||||   |||||| 
Sbjct: 824 catcatatgtcagcagcaaggaagttgccagacaaggaaaccttctcgccaggcttgaat 765

                                                                       
Query: 327 ggtgccangcctntgtatgggcaggtgctgcatcggaacgcgtngcccaacccacaactg 386
           ||||  |  ||| |||| || ||||| |  || ||||| || |  |||||||||||||||
Sbjct: 764 ggtggaagacctctgtagggacaggttccacagcggaaggcatcacccaacccacaactg 705

                                                                       
Query: 387 ccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccaccttc 446
           ||||||||||||  |||||||| |||||| || ||||| ||| |||||||| | ||||||
Sbjct: 704 ccacaagctgactgagggttattgatctgctccgcagtgagctccagcttcccaaccttc 645

            
Query: 447 t 447
           |
Sbjct: 644 t 644
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>gb|AY110043.1| Zea mays CL5496_1 mRNA sequence
          Length = 1258

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 146/181 (80%)
 Strand = Plus / Minus

                                                                       
Query: 267 catcatatgtcggctgagaggaagttatcagacaaggtaaccttctcgcccaacttgaac 326
           ||||||||||| || |  ||||||||  ||||||||| ||||||||||||   |||||| 
Sbjct: 863 catcatatgtcagcagcaaggaagttgccagacaaggaaaccttctcgccaggcttgaat 804

                                                                       
Query: 327 ggtgccangcctntgtatgggcaggtgctgcatcggaacgcgtngcccaacccacaactg 386
           ||||  |  ||| |||| || ||||| |  || ||||| || |  |||||||||||||||
Sbjct: 803 ggtggaagacctctgtagggacaggttccacagcggaaggcatcacccaacccacaactg 744

                                                                       
Query: 387 ccacaagctgacacagggttatcgatctgttctgcagtcagccccagcttctccaccttc 446
           ||||||||||||  |||||||| |||||| || ||||| ||| |||||||| | ||||||
Sbjct: 743 ccacaagctgactgagggttattgatctgctccgcagtgagctccagcttcccaaccttc 684

            
Query: 447 t 447
           |
Sbjct: 683 t 683
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>ref|XM_474393.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 795

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 72/85 (84%)
 Strand = Plus / Minus

                                                                       
Query: 336 cctntgtatgggcaggtgctgcatcggaacgcgtngcccaacccacaactgccacaagct 395
           ||| |||||||||| || |  ||||| || || | ||||||||||||| |||||||||||
Sbjct: 728 cctctgtatgggcaagtaccacatcgaaatgcatcgcccaacccacaattgccacaagct 669

                                    
Query: 396 gacacagggttatcgatctgttctg 420
           |||  |||||||| |||||||||||
Sbjct: 668 gactgagggttattgatctgttctg 644
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>ref|XM_474324.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 798

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                       
Query: 336 cctntgtatgggcaggtgctgcatcggaacgcgtngcccaacccacaactgccacaagct 395
           ||| |||||||||| || |  ||||| || || | ||||||||||||| |||||||||| 
Sbjct: 731 cctctgtatgggcaagtaccacatcgaaatgcatcgcccaacccacaattgccacaagcg 672

                                    
Query: 396 gacacagggttatcgatctgttctg 420
           |||  |||||||| |||||||||||
Sbjct: 671 gactgagggttattgatctgttctg 647
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>dbj|AK102124.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033084O13, full
           insert sequence
          Length = 1379

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 71/85 (83%)
 Strand = Plus / Minus

                                                                       
Query: 336 cctntgtatgggcaggtgctgcatcggaacgcgtngcccaacccacaactgccacaagct 395
           ||| |||||||||| || |  ||||| || || | ||||||||||||| |||||||||| 
Sbjct: 810 cctctgtatgggcaagtaccacatcgaaatgcatcgcccaacccacaattgccacaagcg 751

                                    
Query: 396 gacacagggttatcgatctgttctg 420
           |||  |||||||| |||||||||||
Sbjct: 750 gactgagggttattgatctgttctg 726
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>emb|AL606641.3|OSJN00074 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0032F06,
             complete sequence
          Length = 148023

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 385   tgccacaagctgacacagggttatcgatctgttctg 420
             ||||||||||||||  |||||||| |||||||||||
Sbjct: 62572 tgccacaagctgactgagggttattgatctgttctg 62607
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 385      tgccacaagctgacacagggttatcgatctgttctg 420
                ||||||||||||||  |||||||| |||||||||||
Sbjct: 34856459 tgccacaagctgactgagggttattgatctgttctg 34856494



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                    
Query: 385      tgccacaagctgacacagggttatcgatctgttctg 420
                |||||||||| |||  |||||||| |||||||||||
Sbjct: 34460549 tgccacaagcggactgagggttattgatctgttctg 34460514
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>emb|AL732352.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0124B04, complete
             sequence
          Length = 115564

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 385   tgccacaagctgacacagggttatcgatctgttctg 420
             ||||||||||||||  |||||||| |||||||||||
Sbjct: 36105 tgccacaagctgactgagggttattgatctgttctg 36140
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>emb|AL732354.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0901F07, complete
              sequence
          Length = 110682

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 385    tgccacaagctgacacagggttatcgatctgttctg 420
              ||||||||||||||  |||||||| |||||||||||
Sbjct: 110181 tgccacaagctgactgagggttattgatctgttctg 110216
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>gb|AC154050.1| Drosophila melanogaster clone BACR22M24, complete sequence
          Length = 161653

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 8      cagtcaaattacatgcacgtaa 29
              ||||||||||||||||||||||
Sbjct: 120776 cagtcaaattacatgcacgtaa 120755
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>gb|AC021639.5| Drosophila melanogaster, chromosome X, region 12E-12E, BAC clone
              BACR02C24, complete sequence
          Length = 234783

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 8      cagtcaaattacatgcacgtaa 29
              ||||||||||||||||||||||
Sbjct: 114262 cagtcaaattacatgcacgtaa 114283
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>emb|BX072530.5| Zebrafish DNA sequence from clone DKEY-221K19, complete sequence
          Length = 167009

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 196    tacatagatatcttcctaaaga 217
              ||||||||||||||||||||||
Sbjct: 157345 tacatagatatcttcctaaaga 157324
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>gb|AE003494.4| Drosophila melanogaster chromosome X, section 46 of 74 of the complete
              sequence
          Length = 310498

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 8      cagtcaaattacatgcacgtaa 29
              ||||||||||||||||||||||
Sbjct: 219441 cagtcaaattacatgcacgtaa 219420
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>gb|AC007365.3| Homo sapiens BAC clone RP11-451M22 from 2, complete sequence
          Length = 184285

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 428    ccccagcttctccaccttctg 448
              |||||||||||||||||||||
Sbjct: 116034 ccccagcttctccaccttctg 116054
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 428     ccccagcttctccaccttctg 448
               |||||||||||||||||||||
Sbjct: 2343757 ccccagcttctccaccttctg 2343737
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 424     tcagccccagcttctccacc 443
               ||||||||||||||||||||
Sbjct: 2239381 tcagccccagcttctccacc 2239400
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>emb|AL606457.3|OSJN00002 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0018M05,
             complete sequence
          Length = 164943

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 385   tgccacaagctgacacagggttatcgatctgttctg 420
             |||||||||| |||  |||||||| |||||||||||
Sbjct: 78034 tgccacaagcggactgagggttattgatctgttctg 77999
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>gb|AC010501.7| Homo sapiens chromosome 5 clone CTD-2377O17, complete sequence
          Length = 61738

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 429   cccagcttctccaccttctg 448
             ||||||||||||||||||||
Sbjct: 56039 cccagcttctccaccttctg 56020
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 424      tcagccccagcttctccaccttct 447
                ||||||||| ||||||||||||||
Sbjct: 13206992 tcagccccaccttctccaccttct 13206969
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>gb|AC138229.16| Mus musculus chromosome 1, clone RP23-399N18, complete sequence
          Length = 211732

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 284   gaggaagttatcagacaagg 303
             ||||||||||||||||||||
Sbjct: 85253 gaggaagttatcagacaagg 85272
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>gb|AC116337.2| Homo sapiens chromosome 5 clone CTD-2503O16, complete sequence
          Length = 122363

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 429    cccagcttctccaccttctg 448
              ||||||||||||||||||||
Sbjct: 103393 cccagcttctccaccttctg 103412
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>dbj|AP005692.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0055N01
          Length = 154783

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 424   tcagccccagcttctccaccttct 447
             ||||||||| ||||||||||||||
Sbjct: 28426 tcagccccaccttctccaccttct 28403
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>dbj|AP005728.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0048A13
          Length = 137680

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 424    tcagccccagcttctccaccttct 447
              ||||||||| ||||||||||||||
Sbjct: 129082 tcagccccaccttctccaccttct 129059
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>emb|AL732344.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0403D02, complete
             sequence
          Length = 138387

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                 
Query: 385   tgccacaagctgacacagggttatcgatctgttctg 420
             |||||||||| |||  |||||||| |||||||||||
Sbjct: 81857 tgccacaagcggactgagggttattgatctgttctg 81822


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,921,747
Number of Sequences: 3902068
Number of extensions: 2921747
Number of successful extensions: 53034
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52922
Number of HSP's gapped (non-prelim): 112
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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