ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39d19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009288.1| Triticum aestivum clone wlm0.pk0021.g9:fis, full ... 868 0.0
2ref|XM_476718.1| Oryza sativa (japonica cultivar-group), mRNA 418 e-114
3dbj|AK106594.1| Oryza sativa (japonica cultivar-group) cDNA clon... 418 e-114
4gb|AY104268.1| Zea mays PCO142257 mRNA sequence 266 8e-68
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
6dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic D... 190 4e-45
7dbj|AB097406.1| Raphanus sativus RsProRS1 mRNA for prolyl-tRNA s... 52 0.002
8ref|NM_124631.2| Arabidopsis thaliana ATP binding / proline-tRNA... 44 0.55
9gb|BT010566.1| Arabidopsis thaliana At5g52520 gene, complete cds 44 0.55
10emb|AL357713.11| Human DNA sequence from clone RP11-3J23 on chro... 44 0.55
11gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence 44 0.55
12tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 44 0.55
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
14dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
15dbj|AK176421.1| Arabidopsis thaliana mRNA for prolyl tRNA synthe... 44 0.55
16dbj|AP000378.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.55
17gb|AE008752.1| Salmonella typhimurium LT2, section 56 of 220 of ... 42 2.2
18gb|CP000282.1| Saccharophagus degradans 2-40, complete genome 42 2.2
19gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 42 2.2
20gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 42 2.2
21gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductas... 40 8.6
22gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, co... 40 8.6
23gb|AC150707.3| Bos taurus BAC CH240-275I24 (Children's Hospital... 40 8.6
24gb|AY548445.1| Fremyella diplosiphon clone 3106A6 hypothetical p... 40 8.6
25gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, c... 40 8.6
26gb|AC146082.3| Pan troglodytes BAC clone RP43-55G24 from 7, comp... 40 8.6
27gb|AY957503.1| Anopheles gambiae vasa-like protein mRNA, complet... 40 8.6
28ref|XM_816417.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.6
29ref|XM_813773.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.6
30gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete se... 40 8.6
31gb|AC158588.3| Mus musculus chromosome 5, clone RP24-372I18, com... 40 8.6
32emb|AL121588.24|HSDJ54G6 Human DNA sequence from clone RP1-54G6 ... 40 8.6
33emb|BX008429.1|CNS08EO1 Single read from an extremity of a full-... 40 8.6
34emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 i... 40 8.6
35emb|BX470119.17| Zebrafish DNA sequence from clone CH211-225L4 i... 40 8.6
36emb|CR812483.4| Zebrafish DNA sequence from clone CH211-178I23 i... 40 8.6
37gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, comple... 40 8.6
38dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
39dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
40gb|AC154558.2| Mus musculus BAC clone RP23-240G18 from chromosom... 40 8.6
41gb|AC018646.3|AC018646 Homo sapiens chromosome 7 clone RP11-344L... 40 8.6
42dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
43gb|AC008154.6|AC008154 Homo sapiens clone RPC11-98D12 from 7q31,... 40 8.6
44emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 i... 40 8.6
45emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chr... 40 8.6
46gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome 40 8.6
47dbj|AK114409.1| Ciona intestinalis cDNA, clone:cieg001f17, full ... 40 8.6
48gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, comp... 40 8.6
49gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
50emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 40 8.6 
>gb|BT009288.1| Triticum aestivum clone wlm0.pk0021.g9:fis, full insert mRNA
           sequence
          Length = 1629

 Score =  868 bits (438), Expect = 0.0
 Identities = 498/518 (96%)
 Strand = Plus / Minus

                                                                       
Query: 114 ggtcagtaaagaccacagagaaactgtgtcgaagagaaaagaatctgtagtaaaaatatt 173
           ||||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||
Sbjct: 927 ggtcagtaaagaccacagagaaactgtggaaaagagaaaagaatctgtaataaaaatatt 868

                                                                       
Query: 174 ctgatttctggttgcacaaacatggcctaatatgacttcgcaaaaatagcaacttcatca 233
           ||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| 
Sbjct: 867 ctgatctctggttgcacaaagatggcctaatatgactttgcaaaaatagcaacttcatcg 808

                                                                       
Query: 234 gttggattgccggtcatgaaacatttcttcgcaccccccggttgatcaaagggaaagcac 293
           | |||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||
Sbjct: 807 gctggattgccggtcatgaaacattttttcgcaccctccggctgatcaaagggaaagcac 748

                                                                       
Query: 294 ctgatggtggcactggtctcttctttcactttcagctcatccacatcgctagctgaccat 353
           ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct: 747 ctgatggtggcactggtctcttctttcaccttcagctcatccgcatcgctagctgaccat 688

                                                                       
Query: 354 ggacctcttgcccatttgccctcagcaatgacctccttcagttctccatatgagttgaca 413
           ||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 687 ggacctcttgcccatttaccctcggaaatgacctccttcagttctccatatgagttgaca 628

                                                                       
Query: 414 tcaactatattactatcacgaaatgtgatggccttctgtagaagagatgcctgaatttcc 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tcaactatattactatcacgaaatgtgatggccttctgtagaagagatgcctgaatttcc 568

                                                                       
Query: 474 tctagacggccttttatatgatccaccaatattgatggttccatagatattccaaactcc 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tctagacggccttttatatgatccaccaatattgatggttccatagatattccaaactcc 508

                                                                       
Query: 534 tttccttgctttccagggacatctcgcctagaaagcacaacactcctgtttttcacatca 593
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| 
Sbjct: 507 tttccttgctttccagggacatctcgcctacaaagcacaacactcctgttttttacatcg 448

                                                 
Query: 594 cggggaccaagttcaatccttatgggaactcctttcat 631
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cggggaccaagttcaatccttatgggaactcctttcat 410



 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 50   tgacagaattaaaatcttgc 69
            ||||||||||||||||||||
Sbjct: 1010 tgacagaattaaaatcttgc 991
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>ref|XM_476718.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1638

 Score =  418 bits (211), Expect = e-114
 Identities = 379/435 (87%)
 Strand = Plus / Minus

                                                                        
Query: 200  ctaatatgacttcgcaaaaatagcaacttcatcagttggattgccggtcatgaaacattt 259
            |||||| |||||||||||||| |||||||| || | ||||||||| |||||||| |||||
Sbjct: 1638 ctaatacgacttcgcaaaaattgcaacttcctcggctggattgccagtcatgaagcattt 1579

                                                                        
Query: 260  cttcgcaccccccggttgatcaaagggaaagcacctgatggtggcactggtctcttcttt 319
            ||| || ||| | || || || || || ||||| ||||||||||| ||||||||||||||
Sbjct: 1578 cttagcgccctctggctgctcgaacgggaagcatctgatggtggcgctggtctcttcttt 1519

                                                                        
Query: 320  cactttcagctcatccacatcgctagctgaccatggacctcttgcccatttgccctcagc 379
            ||| |||||||||||  ||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 1518 caccttcagctcatcagcatcgctagctgaccatggccctctcgcccatttaccctcggc 1459

                                                                        
Query: 380  aatgacctccttcagttctccatatgagttgacatcaactatattactatcacgaaatgt 439
            |||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| |||| 
Sbjct: 1458 aatggcctccttcagttctccatatgagcttacatcaactatgttactatcacggaatgc 1399

                                                                        
Query: 440  gatggccttctgtagaagagatgcctgaatttcctctagacggccttttatatgatccac 499
             ||||||||||||||||| ||||| || |||||| ||||||| ||||||||||| |||||
Sbjct: 1398 aatggccttctgtagaagggatgcttggatttccactagacgaccttttatatggtccac 1339

                                                                        
Query: 500  caatattgatggttccatagatattccaaactcctttccttgctttccagggacatctcg 559
            || ||||||||| |||||||| | |||||||||||||||||| |||||||||| ||||||
Sbjct: 1338 cagtattgatggatccatagacactccaaactcctttccttgttttccagggatatctcg 1279

                                                                        
Query: 560  cctagaaagcacaacactcctgtttttcacatcacggggaccaagttcaatccttatggg 619
            ||||||||  ||||||||  ||||| | |||||||||||||||| ||| |  ||||| ||
Sbjct: 1278 cctagaaataacaacacttttgtttgtgacatcacggggaccaatttctagtcttatagg 1219

                           
Query: 620  aactcctttcatctc 634
            |||||| ||||||||
Sbjct: 1218 aactcccttcatctc 1204
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>dbj|AK106594.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-111-H09, full
            insert sequence
          Length = 1444

 Score =  418 bits (211), Expect = e-114
 Identities = 379/435 (87%)
 Strand = Plus / Minus

                                                                        
Query: 200  ctaatatgacttcgcaaaaatagcaacttcatcagttggattgccggtcatgaaacattt 259
            |||||| |||||||||||||| |||||||| || | ||||||||| |||||||| |||||
Sbjct: 1206 ctaatacgacttcgcaaaaattgcaacttcctcggctggattgccagtcatgaagcattt 1147

                                                                        
Query: 260  cttcgcaccccccggttgatcaaagggaaagcacctgatggtggcactggtctcttcttt 319
            ||| || ||| | || || || || || ||||| ||||||||||| ||||||||||||||
Sbjct: 1146 cttagcgccctctggctgctcgaacgggaagcatctgatggtggcgctggtctcttcttt 1087

                                                                        
Query: 320  cactttcagctcatccacatcgctagctgaccatggacctcttgcccatttgccctcagc 379
            ||| |||||||||||  ||||||||||||||||||| ||||| |||||||| ||||| ||
Sbjct: 1086 caccttcagctcatcagcatcgctagctgaccatggccctctcgcccatttaccctcggc 1027

                                                                        
Query: 380  aatgacctccttcagttctccatatgagttgacatcaactatattactatcacgaaatgt 439
            |||| ||||||||||||||||||||||| | ||||||||||| ||||||||||| |||| 
Sbjct: 1026 aatggcctccttcagttctccatatgagcttacatcaactatgttactatcacggaatgc 967

                                                                        
Query: 440  gatggccttctgtagaagagatgcctgaatttcctctagacggccttttatatgatccac 499
             ||||||||||||||||| ||||| || |||||| ||||||| ||||||||||| |||||
Sbjct: 966  aatggccttctgtagaagggatgcttggatttccactagacgaccttttatatggtccac 907

                                                                        
Query: 500  caatattgatggttccatagatattccaaactcctttccttgctttccagggacatctcg 559
            || ||||||||| |||||||| | |||||||||||||||||| |||||||||| ||||||
Sbjct: 906  cagtattgatggatccatagacactccaaactcctttccttgttttccagggatatctcg 847

                                                                        
Query: 560  cctagaaagcacaacactcctgtttttcacatcacggggaccaagttcaatccttatggg 619
            ||||||||  ||||||||  ||||| | |||||||||||||||| ||| |  ||||| ||
Sbjct: 846  cctagaaataacaacacttttgtttgtgacatcacggggaccaatttctagtcttatagg 787

                           
Query: 620  aactcctttcatctc 634
            |||||| ||||||||
Sbjct: 786  aactcccttcatctc 772
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>gb|AY104268.1| Zea mays PCO142257 mRNA sequence
          Length = 1687

 Score =  266 bits (134), Expect = 8e-68
 Identities = 293/346 (84%)
 Strand = Plus / Minus

                                                                        
Query: 289  agcacctgatggtggcactggtctcttctttcactttcagctcatccacatcgctagctg 348
            |||| ||||||||||| |||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 1322 agcatctgatggtggcgctggtctcttctttcactttcagctcatcagcatcgctagctg 1263

                                                                        
Query: 349  accatggacctcttgcccatttgccctcagcaatgacctccttcagttctccatatgagt 408
            |||| |||||||| ||||| || || |||| |||  | |||||||| || ||||||||| 
Sbjct: 1262 accaaggacctctagcccactttccttcagaaatagcttccttcagctcgccatatgagc 1203

                                                                        
Query: 409  tgacatcaactatattactatcacgaaatgtgatggccttctgtagaagagatgcctgaa 468
            | || || || || ||||||||||| ||||| ||||||||||||| ||| ||||| || |
Sbjct: 1202 ttacgtcgacaatgttactatcacggaatgttatggccttctgtaaaagggatgcttgta 1143

                                                                        
Query: 469  tttcctctagacggccttttatatgatccaccaatattgatggttccatagatattccaa 528
            | || |||||||| || |||||||| | ||||||||| || || |||||||| | |||||
Sbjct: 1142 tgtcatctagacgaccctttatatggttcaccaatatcgaaggctccatagacactccaa 1083

                                                                        
Query: 529  actcctttccttgctttccagggacatctcgcctagaaagcacaacactcctgtttttca 588
            |||||||||||||||||||||||||||| |||||||||| |||||||||| | ||| | |
Sbjct: 1082 actcctttccttgctttccagggacatcacgcctagaaaccacaacactcttatttgtga 1023

                                                          
Query: 589  catcacggggaccaagttcaatccttatgggaactcctttcatctc 634
            ||||||| ||||| |  || || ||||  ||||| |||||||||||
Sbjct: 1022 catcacgtggacctatctctattcttacaggaacccctttcatctc 977
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  190 bits (96), Expect = 4e-45
 Identities = 174/200 (87%)
 Strand = Plus / Minus

                                                                           
Query: 426     ctatcacgaaatgtgatggccttctgtagaagagatgcctgaatttcctctagacggcct 485
               |||||||| ||||  ||||||||||||||||| ||||| || |||||| ||||||| |||
Sbjct: 3517138 ctatcacggaatgcaatggccttctgtagaagggatgcttggatttccactagacgacct 3517079

                                                                           
Query: 486     tttatatgatccaccaatattgatggttccatagatattccaaactcctttccttgcttt 545
               |||||||| ||||||| ||||||||| |||||||| | |||||||||||||||||| |||
Sbjct: 3517078 tttatatggtccaccagtattgatggatccatagacactccaaactcctttccttgtttt 3517019

                                                                           
Query: 546     ccagggacatctcgcctagaaagcacaacactcctgtttttcacatcacggggaccaagt 605
               ||||||| ||||||||||||||  ||||||||  ||||| | |||||||||||||||| |
Sbjct: 3517018 ccagggatatctcgcctagaaataacaacacttttgtttgtgacatcacggggaccaatt 3516959

                                   
Query: 606     tcaatccttatgggaactcc 625
               || |  ||||| ||||||||
Sbjct: 3516958 tctagtcttataggaactcc 3516939



 Score =  119 bits (60), Expect = 1e-23
 Identities = 123/144 (85%)
 Strand = Plus / Minus

                                                                           
Query: 200     ctaatatgacttcgcaaaaatagcaacttcatcagttggattgccggtcatgaaacattt 259
               |||||| |||||||||||||| |||||||| || | ||||||||| |||||||| |||||
Sbjct: 3517785 ctaatacgacttcgcaaaaattgcaacttcctcggctggattgccagtcatgaagcattt 3517726

                                                                           
Query: 260     cttcgcaccccccggttgatcaaagggaaagcacctgatggtggcactggtctcttcttt 319
               ||| || ||| | || || || || || ||||| ||||||||||| ||||||||||||||
Sbjct: 3517725 cttagcgccctctggctgctcgaacgggaagcatctgatggtggcgctggtctcttcttt 3517666

                                       
Query: 320     cactttcagctcatccacatcgct 343
               ||| |||||||||||  |||||||
Sbjct: 3517665 caccttcagctcatcagcatcgct 3517642



 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                           
Query: 342     ctagctgaccatggacctcttgcccatttgccctcagcaatgacctccttcagttctcca 401
               |||||||||||||| ||||| |||||||| ||||| |||||| |||||||||||||||||
Sbjct: 3517554 ctagctgaccatggccctctcgcccatttaccctcggcaatggcctccttcagttctcca 3517495

                                         
Query: 402     tatgagttgacatcaactatattact 427
               |||||| | ||||||||||| |||||
Sbjct: 3517494 tatgagcttacatcaactatgttact 3517469
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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0039H02
          Length = 169162

 Score =  190 bits (96), Expect = 4e-45
 Identities = 174/200 (87%)
 Strand = Plus / Minus

                                                                         
Query: 426   ctatcacgaaatgtgatggccttctgtagaagagatgcctgaatttcctctagacggcct 485
             |||||||| ||||  ||||||||||||||||| ||||| || |||||| ||||||| |||
Sbjct: 55088 ctatcacggaatgcaatggccttctgtagaagggatgcttggatttccactagacgacct 55029

                                                                         
Query: 486   tttatatgatccaccaatattgatggttccatagatattccaaactcctttccttgcttt 545
             |||||||| ||||||| ||||||||| |||||||| | |||||||||||||||||| |||
Sbjct: 55028 tttatatggtccaccagtattgatggatccatagacactccaaactcctttccttgtttt 54969

                                                                         
Query: 546   ccagggacatctcgcctagaaagcacaacactcctgtttttcacatcacggggaccaagt 605
             ||||||| ||||||||||||||  ||||||||  ||||| | |||||||||||||||| |
Sbjct: 54968 ccagggatatctcgcctagaaataacaacacttttgtttgtgacatcacggggaccaatt 54909

                                 
Query: 606   tcaatccttatgggaactcc 625
             || |  ||||| ||||||||
Sbjct: 54908 tctagtcttataggaactcc 54889



 Score =  119 bits (60), Expect = 1e-23
 Identities = 123/144 (85%)
 Strand = Plus / Minus

                                                                         
Query: 200   ctaatatgacttcgcaaaaatagcaacttcatcagttggattgccggtcatgaaacattt 259
             |||||| |||||||||||||| |||||||| || | ||||||||| |||||||| |||||
Sbjct: 55735 ctaatacgacttcgcaaaaattgcaacttcctcggctggattgccagtcatgaagcattt 55676

                                                                         
Query: 260   cttcgcaccccccggttgatcaaagggaaagcacctgatggtggcactggtctcttcttt 319
             ||| || ||| | || || || || || ||||| ||||||||||| ||||||||||||||
Sbjct: 55675 cttagcgccctctggctgctcgaacgggaagcatctgatggtggcgctggtctcttcttt 55616

                                     
Query: 320   cactttcagctcatccacatcgct 343
             ||| |||||||||||  |||||||
Sbjct: 55615 caccttcagctcatcagcatcgct 55592



 Score =  107 bits (54), Expect = 4e-20
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                         
Query: 342   ctagctgaccatggacctcttgcccatttgccctcagcaatgacctccttcagttctcca 401
             |||||||||||||| ||||| |||||||| ||||| |||||| |||||||||||||||||
Sbjct: 55504 ctagctgaccatggccctctcgcccatttaccctcggcaatggcctccttcagttctcca 55445

                                       
Query: 402   tatgagttgacatcaactatattact 427
             |||||| | ||||||||||| |||||
Sbjct: 55444 tatgagcttacatcaactatgttact 55419
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>dbj|AB097406.1| Raphanus sativus RsProRS1 mRNA for prolyl-tRNA synthetase, complete
            cds
          Length = 1820

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                      
Query: 345  gctgaccatggacctcttgcccattt 370
            ||||||||||||||||||||||||||
Sbjct: 1490 gctgaccatggacctcttgcccattt 1465
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>ref|NM_124631.2| Arabidopsis thaliana ATP binding / proline-tRNA ligase/ tRNA ligase
            AT5G52520 mRNA, complete cds
          Length = 1858

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 345  gctgaccatggacctcttgcccattt 370
            |||||||| |||||||||||||||||
Sbjct: 1487 gctgaccaaggacctcttgcccattt 1462
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>gb|BT010566.1| Arabidopsis thaliana At5g52520 gene, complete cds
          Length = 1632

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 345  gctgaccatggacctcttgcccattt 370
            |||||||| |||||||||||||||||
Sbjct: 1487 gctgaccaaggacctcttgcccattt 1462
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>emb|AL357713.11| Human DNA sequence from clone RP11-3J23 on chromosome 1 Contains part
             of the RERE gene for arginine-glutamic acid dipeptide (RE)
             repeats (FLJ38775), complete sequence
          Length = 103513

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 145   aagagaaaagaatctgtagtaaaaat 170
             ||||| ||||||||||||||||||||
Sbjct: 73998 aagaggaaagaatctgtagtaaaaat 74023
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>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 145    aagagaaaagaatctgtagtaaaaat 170
              ||||| ||||||||||||||||||||
Sbjct: 127691 aagaggaaagaatctgtagtaaaaat 127666
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>tpg|BK005012.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY
            transcription factor 9 (WRKY9) gene, complete cds
          Length = 8241

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 159  tgtagtaaaaatattctgattt 180
            ||||||||||||||||||||||
Sbjct: 5084 tgtagtaaaaatattctgattt 5105
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 159      tgtagtaaaaatattctgattt 180
                ||||||||||||||||||||||
Sbjct: 10473719 tgtagtaaaaatattctgattt 10473740
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>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              clone:P0469E05
          Length = 160769

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 159    tgtagtaaaaatattctgattt 180
              ||||||||||||||||||||||
Sbjct: 118679 tgtagtaaaaatattctgattt 118700
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>dbj|AK176421.1| Arabidopsis thaliana mRNA for prolyl tRNA synthetase, complete cds,
            clone: RAFL24-15-P22
          Length = 1996

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 345  gctgaccatggacctcttgcccattt 370
            |||||||| |||||||||||||||||
Sbjct: 1536 gctgaccaaggacctcttgcccattt 1511
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>dbj|AP000378.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:T4M5
          Length = 18384

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 345   gctgaccatggacctcttgcccattt 370
             |||||||| |||||||||||||||||
Sbjct: 11452 gctgaccaaggacctcttgcccattt 11427
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>gb|AE008752.1| Salmonella typhimurium LT2, section 56 of 220 of the complete genome
          Length = 20097

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 497   caccaatattgatggttccat 517
             |||||||||||||||||||||
Sbjct: 10718 caccaatattgatggttccat 10698
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>gb|CP000282.1| Saccharophagus degradans 2-40, complete genome
          Length = 5057531

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 320     cactttcagctcatccacatc 340
               |||||||||||||||||||||
Sbjct: 1247923 cactttcagctcatccacatc 1247903
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 497     caccaatattgatggttccat 517
               |||||||||||||||||||||
Sbjct: 1712232 caccaatattgatggttccat 1712252
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 497     caccaatattgatggttccat 517
               |||||||||||||||||||||
Sbjct: 1269333 caccaatattgatggttccat 1269313
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>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and
             partial cds
          Length = 270752

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   accaatattgatggttccat 517
             ||||||||||||||||||||
Sbjct: 93572 accaatattgatggttccat 93553
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>gb|AC114671.14| Mus musculus chromosome 5, clone RP24-199D21, complete sequence
          Length = 172228

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    cagtaaagaccacagagaaa 136
              ||||||||||||||||||||
Sbjct: 129887 cagtaaagaccacagagaaa 129906
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>gb|AC150707.3| Bos taurus  BAC CH240-275I24 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 153353

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 310   tctcttctttcactttcagc 329
             ||||||||||||||||||||
Sbjct: 43441 tctcttctttcactttcagc 43460
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>gb|AY548445.1| Fremyella diplosiphon clone 3106A6 hypothetical protein genes,
           complete cds
          Length = 3834

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 gtagtaaaaatattctgatt 179
           ||||||||||||||||||||
Sbjct: 2   gtagtaaaaatattctgatt 21
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>gb|AC110209.11| Mus musculus chromosome 12, clone RP23-279O18, complete sequence
          Length = 177587

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    gttttgctgaagtgagatta 42
             ||||||||||||||||||||
Sbjct: 16475 gttttgctgaagtgagatta 16456
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>gb|AC146082.3| Pan troglodytes BAC clone RP43-55G24 from 7, complete sequence
          Length = 189996

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ttgacactgatgttttgctg 31
             ||||||||||||||||||||
Sbjct: 89350 ttgacactgatgttttgctg 89331
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>gb|AY957503.1| Anopheles gambiae vasa-like protein mRNA, complete cds
          Length = 2301

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 526  caaactcctttccttgcttt 545
            ||||||||||||||||||||
Sbjct: 2152 caaactcctttccttgcttt 2171
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>ref|XM_816417.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506885.364) partial mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 379 caatgacctccttcagttct 398
           ||||||||||||||||||||
Sbjct: 820 caatgacctccttcagttct 801
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>ref|XM_813773.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053510729.40) partial mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 379 caatgacctccttcagttct 398
           ||||||||||||||||||||
Sbjct: 820 caatgacctccttcagttct 801
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>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence
          Length = 115175

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 55    gaattaaaatcttgctgattgtgg 78
             |||||||||||||||| |||||||
Sbjct: 13904 gaattaaaatcttgcttattgtgg 13927
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>gb|AC158588.3| Mus musculus chromosome 5, clone RP24-372I18, complete sequence
          Length = 179677

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    cagtaaagaccacagagaaa 136
              ||||||||||||||||||||
Sbjct: 138736 cagtaaagaccacagagaaa 138717
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>emb|AL121588.24|HSDJ54G6 Human DNA sequence from clone RP1-54G6 on chromosome 20 Contains an
             autophagy Apg3p/Aut1p-like (APG3) pseudogene, complete
             sequence
          Length = 84871

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tcagcaatgacctccttcag 394
             ||||||||||||||||||||
Sbjct: 48181 tcagcaatgacctccttcag 48162
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>emb|BX008429.1|CNS08EO1 Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAA13DE02 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 960

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 526 caaactcctttccttgcttt 545
           ||||||||||||||||||||
Sbjct: 132 caaactcctttccttgcttt 113
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>emb|CR354549.7| Zebrafish DNA sequence from clone CH211-151O16 in linkage group 25,
              complete sequence
          Length = 136578

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 571    caacactcctgtttttcaca 590
              ||||||||||||||||||||
Sbjct: 114395 caacactcctgtttttcaca 114414
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>emb|BX470119.17| Zebrafish DNA sequence from clone CH211-225L4 in linkage group 20,
            complete sequence
          Length = 106989

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 571  caacactcctgtttttcaca 590
            ||||||||||||||||||||
Sbjct: 3806 caacactcctgtttttcaca 3787
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>emb|CR812483.4| Zebrafish DNA sequence from clone CH211-178I23 in linkage group 20,
             complete sequence
          Length = 22512

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 571   caacactcctgtttttcaca 590
             ||||||||||||||||||||
Sbjct: 18707 caacactcctgtttttcaca 18726
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>gb|AC093796.3| Homo sapiens BAC clone RP11-301H24 from 4, complete sequence
          Length = 165929

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   aaaagaatctgtagtaaaaatatt 173
             |||||||||||||| |||||||||
Sbjct: 26901 aaaagaatctgtagaaaaaatatt 26924
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 290     gcacctgatggtggcactggtctcttctttca 321
               ||||| ||||||  ||||||||||||||||||
Sbjct: 2149849 gcacccgatggttacactggtctcttctttca 2149818
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 165      aaaaatattctgatttctgg 184
                ||||||||||||||||||||
Sbjct: 26119383 aaaaatattctgatttctgg 26119402
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>gb|AC154558.2| Mus musculus BAC clone RP23-240G18 from chromosome 13, complete sequence
          Length = 186758

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 365    ccatttgccctcagcaatga 384
              ||||||||||||||||||||
Sbjct: 119327 ccatttgccctcagcaatga 119346
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>gb|AC018646.3|AC018646 Homo sapiens chromosome 7 clone RP11-344L16, complete sequence
          Length = 184718

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     ttgacactgatgttttgctg 31
              ||||||||||||||||||||
Sbjct: 149448 ttgacactgatgttttgctg 149467
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>dbj|AP003888.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1191_A10
          Length = 140643

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   aaaaatattctgatttctgg 184
             ||||||||||||||||||||
Sbjct: 63314 aaaaatattctgatttctgg 63333
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>gb|AC008154.6|AC008154 Homo sapiens clone RPC11-98D12 from 7q31, complete sequence
          Length = 172241

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttgacactgatgttttgctg 31
             ||||||||||||||||||||
Sbjct: 59508 ttgacactgatgttttgctg 59527
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>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20,
             complete sequence
          Length = 196432

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 571   caacactcctgtttttcaca 590
             ||||||||||||||||||||
Sbjct: 53411 caacactcctgtttttcaca 53430
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>emb|CT009504.11| Mouse DNA sequence from clone RP23-149M9 on chromosome 12, complete
            sequence
          Length = 190345

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   gttttgctgaagtgagatta 42
            ||||||||||||||||||||
Sbjct: 7053 gttttgctgaagtgagatta 7072
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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    aatagcaacttcatcagttg 237
              ||||||||||||||||||||
Sbjct: 250199 aatagcaacttcatcagttg 250218
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>dbj|AK114409.1| Ciona intestinalis cDNA, clone:cieg001f17, full insert sequence
          Length = 2203

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 26   ttgctgaagtgagattacat 45
            ||||||||||||||||||||
Sbjct: 2165 ttgctgaagtgagattacat 2184
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>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence
          Length = 188290

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    gatgttttgctgaagtgaga 39
             ||||||||||||||||||||
Sbjct: 80326 gatgttttgctgaagtgaga 80345
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 290     gcacctgatggtggcactggtctcttctttca 321
               ||||| ||||||  ||||||||||||||||||
Sbjct: 2149793 gcacccgatggttacactggtctcttctttca 2149762
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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 290   gcacctgatggtggcactggtctcttctttca 321
             ||||| ||||||  ||||||||||||||||||
Sbjct: 32073 gcacccgatggttacactggtctcttctttca 32042


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,641,219
Number of Sequences: 3902068
Number of extensions: 6641219
Number of successful extensions: 123041
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122697
Number of HSP's gapped (non-prelim): 344
length of query: 634
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 611
effective length of database: 17,143,297,704
effective search space: 10474554897144
effective search space used: 10474554897144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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