ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX530091.6| Zebrafish DNA sequence from clone DKEYP-92C9 in ... 40 1.2
2emb|AJ833929.1| Branchiostoma floridae mRNA for forkhead transcr... 38 4.6
3gb|AY066446.1| Schmidtea mediterranea clone HB.22.3e unknown mRN... 38 4.6

>emb|BX530091.6| Zebrafish DNA sequence from clone DKEYP-92C9 in linkage group 19,
             complete sequence
          Length = 180025

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    cataatacaatcaaacattg 45
             ||||||||||||||||||||
Sbjct: 64555 cataatacaatcaaacattg 64536



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>emb|AJ833929.1| Branchiostoma floridae mRNA for forkhead transcription factor
            (amphiFoxQ1 gene)
          Length = 4013

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 27   ataatacaatcaaacattg 45
            |||||||||||||||||||
Sbjct: 3494 ataatacaatcaaacattg 3476



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>gb|AY066446.1| Schmidtea mediterranea clone HB.22.3e unknown mRNA sequence
          Length = 679

 Score = 38.2 bits (19), Expect = 4.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 24  tacataatacaatcaaaca 42
           |||||||||||||||||||
Sbjct: 94  tacataatacaatcaaaca 112


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 608,007
Number of Sequences: 3902068
Number of extensions: 608007
Number of successful extensions: 33556
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33551
Number of HSP's gapped (non-prelim): 5
length of query: 103
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 82
effective length of database: 17,151,101,840
effective search space: 1406390350880
effective search space used: 1406390350880
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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