ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39d15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY150913.1| Uncultured candidate division WYO bacterium clone... 46 0.15
2emb|AL513475.13| Human DNA sequence from clone RP11-277I20 on ch... 44 0.58
3gb|AC101812.19| Mus musculus chromosome 19, clone RP24-309C5, co... 44 0.58
4gb|AC079456.28| Homo sapiens 12 BAC RP11-206B11 (Roswell Park Ca... 42 2.3
5emb|AL591034.5| Human DNA sequence from clone RP11-96J19 on chro... 42 2.3
6emb|AL121752.13|HSDJ468N4 Human DNA sequence from clone RP3-468N... 42 2.3
7emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 i... 42 2.3
8gb|AC163761.3| Pan troglodytes BAC clone CH251-214O19 from chrom... 42 2.3
9gb|AC139568.5| Mus musculus chromosome 12, clone RP23-208G5, com... 40 9.0
10gb|U42846.1| Caenorhabditis elegans cosmid T19D2, complete sequence 40 9.0
11gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, comple... 40 9.0
12gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complet... 40 9.0
13ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosom... 40 9.0
14gb|DQ148197.1| Macaca mulatta clone ss1_l08_t7_423 LOC144363 mRN... 40 9.0
15gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome... 40 9.0
16gb|BC040553.1| Homo sapiens coiled-coil domain containing 60, mR... 40 9.0
17emb|Z83846.1|HS415G2 Human DNA sequence from clone CTA-415G2 on ... 40 9.0
18emb|AL591074.10| Human DNA sequence from clone XXyac-60D10 on ch... 40 9.0
19emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chro... 40 9.0
20emb|AL162373.16| Human DNA sequence from clone RP11-272M24 on ch... 40 9.0
21emb|AL121894.26|HSA218C14 Human DNA sequence from clone RP11-218... 40 9.0
22emb|AL096815.18|HSDJ310P5 Human DNA sequence from clone RP1-310P... 40 9.0
23emb|AL035406.25|HS233K16 Human DNA sequence from clone RP1-233K1... 40 9.0
24gb|BC100276.1| Homo sapiens hypothetical protein LOC144363, mRNA... 40 9.0
25gb|AC009321.18| Homo sapiens 12 BAC RP11-392B15 (Roswell Park Ca... 40 9.0
26gb|AC130895.2| Homo sapiens 12 BAC RP11-115H15 (Roswell Park Can... 40 9.0
27gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig co... 40 9.0
28gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chrom... 40 9.0
29emb|CR616971.1| full-length cDNA clone CS0DI082YC14 of Placenta ... 40 9.0
30dbj|AK095164.1| Homo sapiens cDNA FLJ37845 fis, clone BRSSN2012691 40 9.0
31gb|AC087507.7| Homo sapiens chromosome 18, clone RP11-748I20, co... 40 9.0
32gb|AC092794.10| Homo sapiens 12 BAC RP11-295I5 (Roswell Park Can... 40 9.0
33emb|CR601350.1| full-length cDNA clone CS0DI065YH12 of Placenta ... 40 9.0
34emb|CR593194.1| full-length cDNA clone CS0DI011YI16 of Placenta ... 40 9.0
35gb|AC073866.16| Homo sapiens 12q BAC RP11-120B18 (Roswell Park C... 40 9.0
36gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p1... 40 9.0
37gb|AC105410.1| Homo sapiens chromosome 16 clone CTD-2348G11, com... 40 9.0
38gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, com... 40 9.0
39gb|AF332093.1|AF332093 White spot syndrome virus, complete genome 40 9.0
40gb|AC008483.7| Homo sapiens chromosome 5 clone CTC-406I6, comple... 40 9.0
41gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae)... 40 9.0
42dbj|AK084228.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 9.0
43ref|NM_076282.4| Caenorhabditis elegans T19D2.2 (prl-1) mRNA, co... 40 9.0
44ref|NM_178499.2| Homo sapiens coiled-coil domain containing 60 (... 40 9.0
45gb|AC153606.3| Mus musculus 6 BAC RP23-252F12 (Roswell Park Canc... 40 9.0
46gb|AC063973.10|AC063973 Genomic Sequence For Arabidopsis thalian... 40 9.0
47dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
48gb|AC008551.5| Homo sapiens chromosome 16 clone CTC-508F8, compl... 40 9.0
49gb|AC150904.3| Pan troglodytes BAC clone CH251-1149I8 from chrom... 40 9.0
50gb|AF369029.2| White spot syndrome virus, complete genome 40 9.0
51ref|NM_001001660.1| Homo sapiens hypothetical protein LOC144363 ... 40 9.0
52gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, compl... 40 9.0
53gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, co... 40 9.0
54gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, part... 40 9.0
55gb|AF296826.1|F15I15 Arabidopsis thaliana BAC F15I15 40 9.0
56gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete s... 40 9.0
57gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, comp... 40 9.0
58gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosom... 40 9.0
59dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete ge... 40 9.0
60gb|AC155847.3| Mus musculus 6 BAC RP24-158J4 (Roswell Park Cance... 40 9.0
61dbj|AB046436.1| Arabidopsis thaliana DNA, chromosome 5 centromer... 40 9.0
62dbj|AB046435.1| Arabidopsis thaliana DNA, chromosome 5 centromer... 40 9.0
63dbj|AK057730.1| Homo sapiens cDNA FLJ25001 fis, clone CBL00443 40 9.0
64dbj|AK108771.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 9.0
65gb|AF440570.1| Shrimp white spot syndrome virus, complete genome 40 9.0
66gb|BC071769.1| Homo sapiens hypothetical protein LOC144363, mRNA... 40 9.0
67emb|AL133247.1|CNS01DUK BAC sequence from the SPG4 candidate reg... 40 9.0
68emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 40 9.0
69gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, comple... 40 9.0
70emb|CT009750.2| Medicago truncatula chromosome 5 clone mth2-46a1... 40 9.0
71emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chr... 40 9.0
72gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete... 40 9.0
73gb|AY227782.3| Bos taurus T cell receptor alpha (TCRA) gene, J s... 40 9.0
74emb|Z77867.1|HSPA10E3 H.sapiens flow-sorted chromosome 6 TaqI fr... 40 9.0
75emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on ch... 40 9.0
76emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chr... 40 9.0
77dbj|AB049871.1| Macaca fascicularis brain cDNA, clone:QnpA-16830 40 9.0
78gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosom... 40 9.0 
>gb|AY150913.1| Uncultured candidate division WYO bacterium clone WYO10C 16S
           ribosomal RNA gene, partial sequence
          Length = 873

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 59  aacaccaatggctaaagcaatcttctg 85
           |||||||||||| ||||||||||||||
Sbjct: 666 aacaccaatggcgaaagcaatcttctg 692
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>emb|AL513475.13| Human DNA sequence from clone RP11-277I20 on chromosome 6 Contains part
              of the UTRN gene for utrophin (homologous to dystrophin)
              (DRP, DRP1, DMDL), a novel pseudogene similar to
              hypothetical protein HT023 and a novel pseudogene, complete
              sequence
          Length = 191752

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 320    atgaaatgctcccatttctcag 341
              ||||||||||||||||||||||
Sbjct: 183818 atgaaatgctcccatttctcag 183839
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>gb|AC101812.19| Mus musculus chromosome 19, clone RP24-309C5, complete sequence
          Length = 169224

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 114   tgataaaaggaaataaaagaaa 135
             ||||||||||||||||||||||
Sbjct: 88297 tgataaaaggaaataaaagaaa 88276
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>gb|AC079456.28| Homo sapiens 12 BAC RP11-206B11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177640

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 168   tcagagaaaaagaagtggcccaaca 192
             ||||||||||||||||||| |||||
Sbjct: 68855 tcagagaaaaagaagtggctcaaca 68831
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>emb|AL591034.5| Human DNA sequence from clone RP11-96J19 on chromosome 6 Contains a
            60S ribosomal protein L31 (RPL31) pseudogene, a
            replication protein A3 (RPA3) pseudogene and the gene for
            a novel protein, complete sequence
          Length = 94727

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 59   aacaccaatggctaaagcaat 79
            |||||||||||||||||||||
Sbjct: 9137 aacaccaatggctaaagcaat 9117
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>emb|AL121752.13|HSDJ468N4 Human DNA sequence from clone RP3-468N4 on chromosome 20 Contains part
             of the C20orf44 gene for chromosome 20 open reading frame
             44, complete sequence
          Length = 68692

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 17    aaaagaaatgaccagnagctgggt 40
             ||||||||||||||| ||||||||
Sbjct: 26553 aaaagaaatgaccaggagctgggt 26576
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>emb|BX088654.11| Zebrafish DNA sequence from clone CH211-195H6 in linkage group 15,
             complete sequence
          Length = 205794

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 332   catttctcagctgtcatttgt 352
             |||||||||||||||||||||
Sbjct: 92073 catttctcagctgtcatttgt 92093
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>gb|AC163761.3| Pan troglodytes BAC clone CH251-214O19 from chromosome unknown, complete
              sequence
          Length = 193316

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 17     aaaagaaatgaccagnagctgggt 40
              ||||||||||||||| ||||||||
Sbjct: 151451 aaaagaaatgaccaggagctgggt 151474
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>gb|AC139568.5| Mus musculus chromosome 12, clone RP23-208G5, complete sequence
          Length = 202882

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   gaaatgctcccatttctcag 341
             ||||||||||||||||||||
Sbjct: 11243 gaaatgctcccatttctcag 11224
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>gb|U42846.1| Caenorhabditis elegans cosmid T19D2, complete sequence
          Length = 28406

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 10714 ataaaaggaaataaaagaaa 10733
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>gb|AC125332.3| Mus musculus BAC clone RP23-113I20 from 3, complete sequence
          Length = 220068

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   tttgataaaaggaaataaaa 131
             ||||||||||||||||||||
Sbjct: 21202 tttgataaaaggaaataaaa 21183
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>gb|AC116571.5| Mus musculus BAC clone RP23-97B18 from 6, complete sequence
          Length = 113258

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 292   caaggtgctgctgtctgcttcctg 315
             ||||| ||||||||||||||||||
Sbjct: 80268 caaggagctgctgtctgcttcctg 80245
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>ref|NG_000839.1| Homo sapiens cystatin locus (CST@) on chromosome 20
          Length = 477159

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 541    aaaacataatatcaccacca 560
              ||||||||||||||||||||
Sbjct: 247145 aaaacataatatcaccacca 247126



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 541    aaaacataatatcaccacca 560
              ||||||||||||||||||||
Sbjct: 115998 aaaacataatatcaccacca 115979
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>gb|DQ148197.1| Macaca mulatta clone ss1_l08_t7_423 LOC144363 mRNA, 3' UTR
          Length = 354

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 111 ctttgataaaaggaaataaa 130
           ||||||||||||||||||||
Sbjct: 296 ctttgataaaaggaaataaa 315
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>gb|AC152061.6| Mus musculus BAC clone RP23-351K4 from chromosome 12, complete sequence
          Length = 206383

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 322    gaaatgctcccatttctcag 341
              ||||||||||||||||||||
Sbjct: 117653 gaaatgctcccatttctcag 117672
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>gb|BC040553.1| Homo sapiens coiled-coil domain containing 60, mRNA (cDNA clone
            MGC:39827 IMAGE:5301593), complete cds
          Length = 2465

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  gatgaaatgctcccatttct 338
            ||||||||||||||||||||
Sbjct: 1101 gatgaaatgctcccatttct 1082
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>emb|Z83846.1|HS415G2 Human DNA sequence from clone CTA-415G2 on chromosome 22 Contains the
             5' end of the SYN3 gene for Synapsin III, a novel
             pseudogene and a CpG island, complete sequence
          Length = 129957

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ctttgataaaaggaaataaa 130
             ||||||||||||||||||||
Sbjct: 46496 ctttgataaaaggaaataaa 46515
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>emb|AL591074.10| Human DNA sequence from clone XXyac-60D10 on chromosome 20 Contains the
             CST5 gene for cystatin D, the CST2 gene for cystatin SA,
             the CST1 gene for cystatin SN and the CSTP2 gene for
             cystatin pseudogene 2, complete sequence
          Length = 203076

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 541   aaaacataatatcaccacca 560
             ||||||||||||||||||||
Sbjct: 90714 aaaacataatatcaccacca 90733
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>emb|AL513187.6| Human DNA sequence from clone RP11-436H6 on chromosome 1 Contains part
             of the NTNG1 gene for netrin G1, complete sequence
          Length = 122032

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   ctactttgataaaaggaaataaaa 131
             ||||||||||||| ||||||||||
Sbjct: 19697 ctactttgataaatggaaataaaa 19674
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>emb|AL162373.16| Human DNA sequence from clone RP11-272M24 on chromosome 13 Contains a
              novel pseudogene, complete sequence
          Length = 176797

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ataaaaggaaataaaagaaa 135
              ||||||||||||||||||||
Sbjct: 144724 ataaaaggaaataaaagaaa 144705
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>emb|AL121894.26|HSA218C14 Human DNA sequence from clone RP11-218C14 on chromosome 20 Contains the
              3' end of a novel gene, two genes for novel proteins
              similar to cystatin 9-like (mouse) (CST9L), the CST9L gene
              for cystatin 9-like (mouse), a cystatin 9-like (mouse)
              pseudogene, the CST3 gene for cystatin C, a novel gene and
              a CpG island, complete sequence
          Length = 141079

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 541    aaaacataatatcaccacca 560
              ||||||||||||||||||||
Sbjct: 138871 aaaacataatatcaccacca 138890
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>emb|AL096815.18|HSDJ310P5 Human DNA sequence from clone RP1-310P5 on chromosome 6q22.33-24.1
             Contains a novel pseudogene, complete sequence
          Length = 31859

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   aaaaggaaataaaagaaacg 137
             ||||||||||||||||||||
Sbjct: 28986 aaaaggaaataaaagaaacg 28967
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>emb|AL035406.25|HS233K16 Human DNA sequence from clone RP1-233K16 on chromosome 1p36.21-36.33
              Contains the 5' end of the NPHP4 gene for nephronophthisis
              4, the KCNAB2 gene for potassium voltage-gated channel,
              shaker-related subfamily, beta member 2, the 3' end of the
              CHD5 gene for chromodomain helicase DNA binding protein 5
              and a CpG island, complete sequence
          Length = 161651

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 334    tttctcagctgtcatttgtg 353
              ||||||||||||||||||||
Sbjct: 129428 tttctcagctgtcatttgtg 129409
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>gb|BC100276.1| Homo sapiens hypothetical protein LOC144363, mRNA (cDNA clone
            MGC:117195 IMAGE:6178563), complete cds
          Length = 1097

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1047 ctttgataaaaggaaataaa 1066
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>gb|AC009321.18| Homo sapiens 12 BAC RP11-392B15 (Roswell Park Cancer Institute
           Human BAC Library) complete sequence
          Length = 88746

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 331 ccatttctcagctgtcattt 350
           ||||||||||||||||||||
Sbjct: 464 ccatttctcagctgtcattt 483
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>gb|AC130895.2| Homo sapiens 12 BAC RP11-115H15 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123162

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 331    ccatttctcagctgtcattt 350
              ||||||||||||||||||||
Sbjct: 121622 ccatttctcagctgtcattt 121641
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>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox
              cluster, cholinesterase, and COLP5alpha genes, complete
              sequence
          Length = 796348

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 323    aaatgctcccatttctcagc 342
              ||||||||||||||||||||
Sbjct: 593376 aaatgctcccatttctcagc 593395
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>gb|AC175467.3| Pan troglodytes BAC clone CH251-302C22 from chromosome unknown, complete
              sequence
          Length = 186532

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 111    ctttgataaaaggaaataaa 130
              ||||||||||||||||||||
Sbjct: 120831 ctttgataaaaggaaataaa 120850
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>emb|CR616971.1| full-length cDNA clone CS0DI082YC14 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 2171

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1043 ctttgataaaaggaaataaa 1062
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>dbj|AK095164.1| Homo sapiens cDNA FLJ37845 fis, clone BRSSN2012691
          Length = 2632

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 2597 ctttgataaaaggaaataaa 2616
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>gb|AC087507.7| Homo sapiens chromosome 18, clone RP11-748I20, complete sequence
          Length = 129457

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 111   ctttgataaaaggaaataaaagaa 134
             ||||||||| ||||||||||||||
Sbjct: 79912 ctttgataagaggaaataaaagaa 79889
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>gb|AC092794.10| Homo sapiens 12 BAC RP11-295I5 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125756

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ctttgataaaaggaaataaa 130
             ||||||||||||||||||||
Sbjct: 22669 ctttgataaaaggaaataaa 22650
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>emb|CR601350.1| full-length cDNA clone CS0DI065YH12 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1068

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1032 ctttgataaaaggaaataaa 1051
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>emb|CR593194.1| full-length cDNA clone CS0DI011YI16 of Placenta Cot 25-normalized of
            Homo sapiens (human)
          Length = 1039

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1015 ctttgataaaaggaaataaa 1034
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>gb|AC073866.16| Homo sapiens 12q BAC RP11-120B18 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 153756

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   gatgaaatgctcccatttct 338
             ||||||||||||||||||||
Sbjct: 74717 gatgaaatgctcccatttct 74736
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>gb|AC001228.1|HSAC001228 244Kb Contig from Human Chromosome 11p15.5 spanning D11S1 through D11S25,
              complete sequence
          Length = 244254

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 225    gaccaaaccagaaagaaacatgct 248
              |||||||| |||||||||||||||
Sbjct: 215664 gaccaaactagaaagaaacatgct 215687
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>gb|AC105410.1| Homo sapiens chromosome 16 clone CTD-2348G11, complete sequence
          Length = 133838

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 466    gccttggtcttgccccattt 485
              ||||||||||||||||||||
Sbjct: 133784 gccttggtcttgccccattt 133765
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>gb|AC092295.2| Homo sapiens chromosome 19 clone CTD-2630F21, complete sequence
          Length = 165566

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 64080 ataaaaggaaataaaagaaa 64099
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>gb|AF332093.1|AF332093 White spot syndrome virus, complete genome
          Length = 305107

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    atcctctatgaccaaaccag 235
              ||||||||||||||||||||
Sbjct: 100756 atcctctatgaccaaaccag 100775
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>gb|AC008483.7| Homo sapiens chromosome 5 clone CTC-406I6, complete sequence
          Length = 152533

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 111   ctttgataaaaggaaataaa 130
             ||||||||||||||||||||
Sbjct: 32277 ctttgataaaaggaaataaa 32296
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>gb|AE016826.1| Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome
          Length = 615980

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 538    cagaaaacataatatcacca 557
              ||||||||||||||||||||
Sbjct: 506149 cagaaaacataatatcacca 506168
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>dbj|AK084228.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230010P07
           product:unclassifiable, full insert sequence
          Length = 1395

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 112 tttgataaaaggaaataaaagaaa 135
           |||| |||||||||||||||||||
Sbjct: 643 tttgttaaaaggaaataaaagaaa 620
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>ref|NM_076282.4| Caenorhabditis elegans T19D2.2 (prl-1) mRNA, complete cds
          Length = 1549

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 116  ataaaaggaaataaaagaaa 135
            ||||||||||||||||||||
Sbjct: 1041 ataaaaggaaataaaagaaa 1022
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>ref|NM_178499.2| Homo sapiens coiled-coil domain containing 60 (CCDC60), mRNA
          Length = 2465

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  gatgaaatgctcccatttct 338
            ||||||||||||||||||||
Sbjct: 1101 gatgaaatgctcccatttct 1082
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>gb|AC153606.3| Mus musculus 6 BAC RP23-252F12 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 203410

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 228   caaaccagaaagaaacatgctaaa 251
             ||||||||||| ||||||||||||
Sbjct: 95505 caaaccagaaaaaaacatgctaaa 95528
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>gb|AC063973.10|AC063973 Genomic Sequence For Arabidopsis thaliana Clone T6F08 From Chromosome
             V, complete sequence
          Length = 138940

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 15740 ataaaaggaaataaaagaaa 15759



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   tttgataaaaggaaataaaagaaa 135
             ||||| ||||||||||||||||||
Sbjct: 15579 tttgagaaaaggaaataaaagaaa 15602
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 331      ccatttctcagctgtcatttgtgg 354
                ||||||||||||||||| ||||||
Sbjct: 22312451 ccatttctcagctgtcaattgtgg 22312474
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>gb|AC008551.5| Homo sapiens chromosome 16 clone CTC-508F8, complete sequence
          Length = 160138

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   gccttggtcttgccccattt 485
             ||||||||||||||||||||
Sbjct: 23528 gccttggtcttgccccattt 23509
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>gb|AC150904.3| Pan troglodytes BAC clone CH251-1149I8 from chromosome y, complete
             sequence
          Length = 204128

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 466   gccttggtcttgccccattt 485
             ||||||||||||||||||||
Sbjct: 77131 gccttggtcttgccccattt 77112
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>gb|AF369029.2| White spot syndrome virus, complete genome
          Length = 292967

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    atcctctatgaccaaaccag 235
              ||||||||||||||||||||
Sbjct: 149700 atcctctatgaccaaaccag 149719
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>ref|NM_001001660.1| Homo sapiens hypothetical protein LOC144363 (LOC144363), mRNA
          Length = 1095

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1030 ctttgataaaaggaaataaa 1049
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>gb|AC010423.8| Homo sapiens chromosome 5 clone CTD-2193G5, complete sequence
          Length = 183787

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 111   ctttgataaaaggaaataaa 130
             ||||||||||||||||||||
Sbjct: 62417 ctttgataaaaggaaataaa 62398
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>gb|AC091167.19| Homo sapiens chromosome 15, clone RP11-697E2, complete sequence
          Length = 202381

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   aaagaaacatgctaaaggat 255
             ||||||||||||||||||||
Sbjct: 42704 aaagaaacatgctaaaggat 42723
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>gb|AY144442.1| Sorghum bicolor BAC 95A23/98N8.1 Rph region, partial sequence
          Length = 268433

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ataaaaggaaataaaagaaa 135
              ||||||||||||||||||||
Sbjct: 253013 ataaaaggaaataaaagaaa 252994



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ataaaaggaaataaaagaaa 135
              ||||||||||||||||||||
Sbjct: 252537 ataaaaggaaataaaagaaa 252518



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 116    ataaaaggaaataaaagaaa 135
              ||||||||||||||||||||
Sbjct: 252096 ataaaaggaaataaaagaaa 252077
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>gb|AF296826.1|F15I15 Arabidopsis thaliana BAC F15I15
          Length = 93896

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 76386 ataaaaggaaataaaagaaa 76405



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   tttgataaaaggaaataaaagaaa 135
             ||||| ||||||||||||||||||
Sbjct: 76225 tttgagaaaaggaaataaaagaaa 76248
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>gb|AC009756.9|AC009756 Homo sapiens, clone RP11-45P2, complete sequence
          Length = 178624

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 69833 ataaaaggaaataaaagaaa 69852
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>gb|AC131971.9| Homo sapiens chromosome 11, clone CTC-343N3, complete sequence
          Length = 176226

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 225   gaccaaaccagaaagaaacatgct 248
             |||||||| |||||||||||||||
Sbjct: 59974 gaccaaactagaaagaaacatgct 59951
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>gb|AC138117.4| Mus musculus BAC clone RP24-146K16 from chromosome 6, complete sequence
          Length = 230020

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 292    caaggtgctgctgtctgcttcctg 315
              ||||| ||||||||||||||||||
Sbjct: 168503 caaggagctgctgtctgcttcctg 168480
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>dbj|BA000016.3| Clostridium perfringens str. 13 DNA, complete genome
          Length = 3031430

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    tgataaaaggaaataaaaga 133
              ||||||||||||||||||||
Sbjct: 987386 tgataaaaggaaataaaaga 987405
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>gb|AC155847.3| Mus musculus 6 BAC RP24-158J4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 151171

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 114   tgataaaaggaaataaaaga 133
             ||||||||||||||||||||
Sbjct: 21551 tgataaaaggaaataaaaga 21532
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>dbj|AB046436.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T32O2
          Length = 108720

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 116  ataaaaggaaataaaagaaa 135
            ||||||||||||||||||||
Sbjct: 2870 ataaaaggaaataaaagaaa 2889



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 112  tttgataaaaggaaataaaagaaa 135
            ||||| ||||||||||||||||||
Sbjct: 2709 tttgagaaaaggaaataaaagaaa 2732
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>dbj|AB046435.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:F15I15
          Length = 93896

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 76386 ataaaaggaaataaaagaaa 76405



 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 112   tttgataaaaggaaataaaagaaa 135
             ||||| ||||||||||||||||||
Sbjct: 76225 tttgagaaaaggaaataaaagaaa 76248
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>dbj|AK057730.1| Homo sapiens cDNA FLJ25001 fis, clone CBL00443
          Length = 1127

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1092 ctttgataaaaggaaataaa 1111
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>dbj|AK108771.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-150-H06, full
            insert sequence
          Length = 1403

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 331  ccatttctcagctgtcatttgtgg 354
            ||||||||||||||||| ||||||
Sbjct: 1103 ccatttctcagctgtcaattgtgg 1080
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>gb|AF440570.1| Shrimp white spot syndrome virus, complete genome
          Length = 307287

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 216    atcctctatgaccaaaccag 235
              ||||||||||||||||||||
Sbjct: 134343 atcctctatgaccaaaccag 134362
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>gb|BC071769.1| Homo sapiens hypothetical protein LOC144363, mRNA (cDNA clone
            MGC:88411 IMAGE:4246777), complete cds
          Length = 1095

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1030 ctttgataaaaggaaataaa 1049
to top
>emb|AL133247.1|CNS01DUK BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 11B22 of
              library CITB_978_SKB from chromosome 2 of Homo sapiens
              (Human)
          Length = 189316

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 115    gataaaaggaaataaaagaa 134
              ||||||||||||||||||||
Sbjct: 147019 gataaaaggaaataaaagaa 147000
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
             complete sequence
          Length = 147214

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 331   ccatttctcagctgtcatttgtgg 354
             ||||||||||||||||| ||||||
Sbjct: 63355 ccatttctcagctgtcaattgtgg 63378
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>gb|AC147152.3| Mus musculus BAC clone RP24-257J19 from 3, complete sequence
          Length = 186839

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   tttgataaaaggaaataaaa 131
             ||||||||||||||||||||
Sbjct: 33492 tttgataaaaggaaataaaa 33511
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>emb|CT009750.2| Medicago truncatula chromosome 5 clone mth2-46a17, COMPLETE SEQUENCE
          Length = 120704

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   cgcattcatcatcagagaaa 176
             ||||||||||||||||||||
Sbjct: 86658 cgcattcatcatcagagaaa 86639
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>emb|CT009684.7| Mouse DNA sequence from clone RP23-127L21 on chromosome 13, complete
             sequence
          Length = 205067

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    aactttgaaaagaaatgacc 29
             ||||||||||||||||||||
Sbjct: 49628 aactttgaaaagaaatgacc 49609
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>gb|AC002070.1|HSAC002070 Human BAC clone 7E17 from 12q, complete sequence
          Length = 165197

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 319   gatgaaatgctcccatttct 338
             ||||||||||||||||||||
Sbjct: 39183 gatgaaatgctcccatttct 39164
to top
>gb|AY227782.3| Bos taurus T cell receptor alpha (TCRA) gene, J segments and C region
          Length = 141711

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 321   tgaaatgctcccatttctca 340
             ||||||||||||||||||||
Sbjct: 48094 tgaaatgctcccatttctca 48113
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>emb|Z77867.1|HSPA10E3 H.sapiens flow-sorted chromosome 6 TaqI fragment, SC6pA10E3
          Length = 547

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 118 aaaaggaaataaaagaaacg 137
           ||||||||||||||||||||
Sbjct: 424 aaaaggaaataaaagaaacg 405
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>emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on chromosome 4, complete
             sequence
          Length = 211580

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ataaaaggaaataaaagaaa 135
             ||||||||||||||||||||
Sbjct: 70292 ataaaaggaaataaaagaaa 70273
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>emb|AL928658.6| Mouse DNA sequence from clone RP23-238A18 on chromosome 2, complete
              sequence
          Length = 220679

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 163    catcatcagagaaaaagaag 182
              ||||||||||||||||||||
Sbjct: 116548 catcatcagagaaaaagaag 116567
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>dbj|AB049871.1| Macaca fascicularis brain cDNA, clone:QnpA-16830
          Length = 1718

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 111  ctttgataaaaggaaataaa 130
            ||||||||||||||||||||
Sbjct: 1643 ctttgataaaaggaaataaa 1662
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>gb|AC169127.3| Mus musculus BAC clone RP24-493G21 from chromosome 9, complete sequence
          Length = 156163

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 112   tttgataaaaggaaataaaagaaa 135
             |||| |||||||||||||||||||
Sbjct: 14092 tttgttaaaaggaaataaaagaaa 14069


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,095,336
Number of Sequences: 3902068
Number of extensions: 7095336
Number of successful extensions: 147231
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146946
Number of HSP's gapped (non-prelim): 285
length of query: 662
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 639
effective length of database: 17,143,297,704
effective search space: 10954567232856
effective search space used: 10954567232856
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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