ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38o15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on ch... 44 0.61
2gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 44 0.61
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.61
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.61
5emb|CT476825.1| S.lycopersicum DNA sequence from clone LE_HBa-19... 44 0.61
6gb|AY803272.1| Homo sapiens AKAP9-BRAF fusion protein mRNA, comp... 42 2.4
7ref|XM_519576.1| PREDICTED: Pan troglodytes LOC463952 (LOC463952... 42 2.4
8gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 42 2.4
9gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromo... 42 2.4
10ref|XM_532456.2| PREDICTED: Canis familiaris similar to A-kinase... 42 2.4
11ref|XM_572952.1| Cryptococcus neoformans var. neoformans JEC21 h... 42 2.4
12gb|AC126676.3| Mus musculus BAC clone RP23-445H7 from chromosome... 42 2.4
13emb|AL513324.9| Human DNA sequence from clone RP11-355F22 on chr... 42 2.4
14emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in... 42 2.4
15ref|NM_005751.3| Homo sapiens A kinase (PRKA) anchor protein (yo... 42 2.4
16ref|NM_147171.1| Homo sapiens A kinase (PRKA) anchor protein (yo... 42 2.4
17ref|NM_147166.1| Homo sapiens A kinase (PRKA) anchor protein (yo... 42 2.4
18ref|NM_147185.1| Homo sapiens A kinase (PRKA) anchor protein (yo... 42 2.4
19gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q... 42 2.4
20emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50 42 2.4
21emb|AJ131693.1|HSA131693 Homo sapiens mRNA for AKAP450 protein 42 2.4
22gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, compl... 42 2.4
23gb|AF026245.1|AF026245 Homo sapiens yotiao mRNA, complete cds 42 2.4
24gb|AF083037.1|AF083037 Homo sapiens A-kinase anchoring protein A... 42 2.4
25emb|AJ547615.1|FRU547615 Takifugu rubripes pth2 gene for parathy... 42 2.4
26dbj|AB019691.1| Homo sapiens mRNA for Centrosome- and Golgi-loca... 42 2.4
27ref|NM_180688.1| Arabidopsis thaliana unknown protein AT3G55880 ... 40 9.5
28gb|AC121552.14| Mus musculus chromosome 19, clone RP24-145I16, c... 40 9.5
29gb|AC123882.6| Mus musculus chromosome 1, clone RP23-447L15, com... 40 9.5
30gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete... 40 9.5
31gb|BT011194.1| Drosophila melanogaster LD16247 full insert cDNA 40 9.5
32gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete s... 40 9.5
33emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on ch... 40 9.5
34ref|XM_504781.1| Yarrowia lipolytica CLIB122, YALI0E34650g predi... 40 9.5
35gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 40 9.5
36emb|AL163832.1|ATF27K19 Arabidopsis thaliana DNA chromosome 3, B... 40 9.5
37ref|NM_001014695.1| Drosophila melanogaster Sox102F CG11153-RB, ... 40 9.5
38gb|AC155282.1| Medicago truncatula chromosome 2 BAC clone mth2-6... 40 9.5
39emb|AL732435.17| Mouse DNA sequence from clone RP23-48L13 on chr... 40 9.5
40dbj|AB018121.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 9.5
41emb|CR392004.12| Zebrafish DNA sequence from clone CH211-165H11 ... 40 9.5
42emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 i... 40 9.5
43gb|AE003847.5| Drosophila melanogaster chromosome 4, section 4 o... 40 9.5
44gb|AC115781.9| Mus musculus chromosome 19, clone RP23-167K23, co... 40 9.5
45emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 9.5 
>emb|AL354896.16| Human DNA sequence from clone RP11-512M17 on chromosome 13, complete
              sequence
          Length = 209743

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 271    ttgtatttttcatttaccttct 292
              ||||||||||||||||||||||
Sbjct: 175496 ttgtatttttcatttaccttct 175475
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 274   tatttttcatttaccttcttat 295
             ||||||||||||||||||||||
Sbjct: 86387 tatttttcatttaccttcttat 86408
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 274      tatttttcatttaccttcttat 295
                ||||||||||||||||||||||
Sbjct: 18264783 tatttttcatttaccttcttat 18264762
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 274      tatttttcatttaccttcttat 295
                ||||||||||||||||||||||
Sbjct: 18274036 tatttttcatttaccttcttat 18274015
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>emb|CT476825.1| S.lycopersicum DNA sequence from clone LE_HBa-198L24 on chromosome 4,
             complete sequence
          Length = 160432

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 294   atgctcttaacatatactatat 315
             ||||||||||||||||||||||
Sbjct: 87516 atgctcttaacatatactatat 87537
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>gb|AY803272.1| Homo sapiens AKAP9-BRAF fusion protein mRNA, complete cds
          Length = 4567

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2138 tccaaaattaattgattctgc 2118
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>ref|XM_519576.1| PREDICTED: Pan troglodytes LOC463952 (LOC463952), mRNA
          Length = 2805

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 332 tccaaaattaattgattctgc 352
           |||||||||||||||||||||
Sbjct: 668 tccaaaattaattgattctgc 648
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>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
              sequence
          Length = 1178688

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 40     tggagtggaggagggaaaggg 60
              |||||||||||||||||||||
Sbjct: 155202 tggagtggaggagggaaaggg 155182
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>gb|AC183665.2| Pan troglodytes BAC clone CH251-655J2 from chromosome unknown, complete
             sequence
          Length = 194692

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   tccaaaattaattgattctgc 352
             |||||||||||||||||||||
Sbjct: 87287 tccaaaattaattgattctgc 87267
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>ref|XM_532456.2| PREDICTED: Canis familiaris similar to A-kinase anchor protein 9
            isoform 2 (LOC475224), mRNA
          Length = 12421

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2300 tccaaaattaattgattctgc 2280
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>ref|XM_572952.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNI00640) partial mRNA
          Length = 3686

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 40   tggagtggaggagggaaaggg 60
            |||||||||||||||||||||
Sbjct: 1962 tggagtggaggagggaaaggg 1942
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>gb|AC126676.3| Mus musculus BAC clone RP23-445H7 from chromosome 7, complete sequence
          Length = 190059

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 275   atttttcatttaccttcttat 295
             |||||||||||||||||||||
Sbjct: 43415 atttttcatttaccttcttat 43395
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>emb|AL513324.9| Human DNA sequence from clone RP11-355F22 on chromosome 10, complete
              sequence
          Length = 131195

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 41     ggagtggaggagggaaagggtggatgaaa 69
              |||||||||||||||||||| ||| ||||
Sbjct: 111920 ggagtggaggagggaaagggaggaagaaa 111948
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>emb|CR376737.4| Zebrafish DNA sequence from clone CH211-14G13 in linkage group 24,
            complete sequence
          Length = 158366

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 237  aaattaaaatgaatgtcgaaa 257
            |||||||||||||||||||||
Sbjct: 4247 aaattaaaatgaatgtcgaaa 4227
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>ref|NM_005751.3| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9),
            transcript variant 2, mRNA
          Length = 12462

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2315 tccaaaattaattgattctgc 2295
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>ref|NM_147171.1| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9),
            transcript variant 1, mRNA
          Length = 12474

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2351 tccaaaattaattgattctgc 2331
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>ref|NM_147166.1| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9),
            transcript variant 4, mRNA
          Length = 6058

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2351 tccaaaattaattgattctgc 2331
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>ref|NM_147185.1| Homo sapiens A kinase (PRKA) anchor protein (yotiao) 9 (AKAP9),
            transcript variant 3, mRNA
          Length = 12450

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2315 tccaaaattaattgattctgc 2295
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>gb|AC000066.1|AC000066 Homo sapiens BAC clone CTA-293F11 from 7q21-7q22, complete sequence
          Length = 94960

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   tccaaaattaattgattctgc 352
             |||||||||||||||||||||
Sbjct: 47312 tccaaaattaattgattctgc 47292
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>emb|AJ010770.1|HSA010770 Homo sapiens hyperion gene, exons 1-50
          Length = 170008

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 332   tccaaaattaattgattctgc 352
             |||||||||||||||||||||
Sbjct: 61421 tccaaaattaattgattctgc 61401
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>emb|AJ131693.1|HSA131693 Homo sapiens mRNA for AKAP450 protein
          Length = 12465

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2315 tccaaaattaattgattctgc 2295
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>gb|AC154756.2| Mus musculus BAC clone RP23-114J15 from 13, complete sequence
          Length = 189515

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 299    cttaacatatactatattccg 319
              |||||||||||||||||||||
Sbjct: 143425 cttaacatatactatattccg 143445
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>gb|AF026245.1|AF026245 Homo sapiens yotiao mRNA, complete cds
          Length = 6018

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2313 tccaaaattaattgattctgc 2293
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>gb|AF083037.1|AF083037 Homo sapiens A-kinase anchoring protein AKAP350 mRNA, partial cds
          Length = 11318

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 1163 tccaaaattaattgattctgc 1143
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>emb|AJ547615.1|FRU547615 Takifugu rubripes pth2 gene for parathyroid hormone receptor, exons
           1-13
          Length = 28920

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 17  tagtaaaatagaaatggagga 37
           |||||||||||||||||||||
Sbjct: 753 tagtaaaatagaaatggagga 773
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>dbj|AB019691.1| Homo sapiens mRNA for Centrosome- and Golgi-localized PKN-associated
            protein (CG-NAP), complete cds
          Length = 12278

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 332  tccaaaattaattgattctgc 352
            |||||||||||||||||||||
Sbjct: 2179 tccaaaattaattgattctgc 2159
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>ref|NM_180688.1| Arabidopsis thaliana unknown protein AT3G55880 transcript variant
            AT3G55880.1 mRNA, complete cds
          Length = 1028

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  actagaggaaattgtatttt 279
            ||||||||||||||||||||
Sbjct: 996  actagaggaaattgtatttt 1015
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>gb|AC121552.14| Mus musculus chromosome 19, clone RP24-145I16, complete sequence
          Length = 179737

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   tatttttcatttaccttctt 293
             ||||||||||||||||||||
Sbjct: 21273 tatttttcatttaccttctt 21254
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>gb|AC123882.6| Mus musculus chromosome 1, clone RP23-447L15, complete sequence
          Length = 177559

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 226    aaatgtggtacaaattaaaa 245
              ||||||||||||||||||||
Sbjct: 103916 aaatgtggtacaaattaaaa 103935
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>gb|AC010916.9| Drosophila melanogaster clone BACR11A04, complete sequence
          Length = 165458

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 269    aattgtatttttcatttaccttct 292
              |||||||||||||||||| |||||
Sbjct: 142239 aattgtatttttcatttatcttct 142216
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>gb|BT011194.1| Drosophila melanogaster LD16247 full insert cDNA
          Length = 3444

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 269  aattgtatttttcatttaccttct 292
            |||||||||||||||||| |||||
Sbjct: 2666 aattgtatttttcatttatcttct 2643
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>gb|AC149268.21| Medicago truncatula clone mth2-94j16, complete sequence
          Length = 146810

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 547    taataatgtattgctcatta 566
              ||||||||||||||||||||
Sbjct: 101524 taataatgtattgctcatta 101505
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>emb|AL731561.12| Human DNA sequence from clone RP11-463P17 on chromosome 10 Contains a
              novel gene, gene FLJ32104, a novel gene, the RBP3 gene for
              retinol binding protein 3, the GDF2 gene for growth
              differentiation factor 2, the GDF10 gene for growth
              differentiation factor 10 and three CpG islands, complete
              sequence
          Length = 204512

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     ggagtggaggagggaaaggg 60
              ||||||||||||||||||||
Sbjct: 193085 ggagtggaggagggaaaggg 193104
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>ref|XM_504781.1| Yarrowia lipolytica CLIB122, YALI0E34650g predicted mRNA
          Length = 1638

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  gaaatggaggacgtggagtg 46
           ||||||||||||||||||||
Sbjct: 322 gaaatggaggacgtggagtg 341
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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tgtgttccatgttcattccc 218
             ||||||||||||||||||||
Sbjct: 26232 tgtgttccatgttcattccc 26213
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>emb|AL163832.1|ATF27K19 Arabidopsis thaliana DNA chromosome 3, BAC clone F27K19
          Length = 95111

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 260   actagaggaaattgtatttt 279
             ||||||||||||||||||||
Sbjct: 22823 actagaggaaattgtatttt 22842
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>ref|NM_001014695.1| Drosophila melanogaster Sox102F CG11153-RB, transcript variant B
            (Sox102F), mRNA
          Length = 3430

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 269  aattgtatttttcatttaccttct 292
            |||||||||||||||||| |||||
Sbjct: 2664 aattgtatttttcatttatcttct 2641
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>gb|AC155282.1| Medicago truncatula chromosome 2 BAC clone mth2-63e12, complete sequence
          Length = 251117

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 228    atgtggtacaaattaaaatgaatg 251
              ||||||||||||||||| ||||||
Sbjct: 160811 atgtggtacaaattaaactgaatg 160834
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>emb|AL732435.17| Mouse DNA sequence from clone RP23-48L13 on chromosome X, complete
             sequence
          Length = 127212

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 271   ttgtatttttcatttacctt 290
             ||||||||||||||||||||
Sbjct: 26990 ttgtatttttcatttacctt 27009
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>dbj|AB018121.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2
          Length = 86854

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 227   aatgtggtacaaattaaaatgaat 250
             |||||||||||||| |||||||||
Sbjct: 44585 aatgtggtacaaatgaaaatgaat 44562
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>emb|CR392004.12| Zebrafish DNA sequence from clone CH211-165H11 in linkage group 18,
             complete sequence
          Length = 64955

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   aatgtggtacaaattaaaat 246
             ||||||||||||||||||||
Sbjct: 44076 aatgtggtacaaattaaaat 44057
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>emb|BX927103.12| Zebrafish DNA sequence from clone DKEY-262M23 in linkage group 18,
             complete sequence
          Length = 185008

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 227   aatgtggtacaaattaaaat 246
             ||||||||||||||||||||
Sbjct: 37869 aatgtggtacaaattaaaat 37850
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>gb|AE003847.5| Drosophila melanogaster chromosome 4, section 4 of 5 of the complete
            sequence
          Length = 107108

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 269  aattgtatttttcatttaccttct 292
            |||||||||||||||||| |||||
Sbjct: 3347 aattgtatttttcatttatcttct 3370
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>gb|AC115781.9| Mus musculus chromosome 19, clone RP23-167K23, complete sequence
          Length = 210190

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 274   tatttttcatttaccttctt 293
             ||||||||||||||||||||
Sbjct: 40802 tatttttcatttaccttctt 40821
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 27      gaaatggaggacgtggagtg 46
               ||||||||||||||||||||
Sbjct: 4127543 gaaatggaggacgtggagtg 4127562


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,698,693
Number of Sequences: 3902068
Number of extensions: 6698693
Number of successful extensions: 129910
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129716
Number of HSP's gapped (non-prelim): 194
length of query: 697
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 674
effective length of database: 17,143,297,704
effective search space: 11554582652496
effective search space used: 11554582652496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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