ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2g22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ219480.1| Wheat putative protease mRNA, particial cds 355 1e-94
2dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clon... 220 5e-54
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
4dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
5dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D... 105 2e-19
6ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-t... 68 4e-08
7emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon 46 0.15
8dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
9dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.3
10dbj|AK069352.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.3
11gb|AE016830.1| Enterococcus faecalis V583, complete genome 42 2.3
12gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
13emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22... 40 9.3
14gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome... 40 9.3
15gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosom... 40 9.3
16emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chr... 40 9.3
17emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H... 40 9.3
18emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BA... 40 9.3
19emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 i... 40 9.3
20gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, comple... 40 9.3
21gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete s... 40 9.3
22gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, com... 40 9.3
23gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp12... 40 9.3
24dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.3
25gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ... 40 9.3
26gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ... 40 9.3
27gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ... 40 9.3
28gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ... 40 9.3
29gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 9.3
30emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in... 40 9.3
31gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromoso... 40 9.3
32dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:... 40 9.3 
>gb|DQ219480.1| Wheat putative protease mRNA, particial cds
          Length = 453

 Score =  355 bits (179), Expect = 1e-94
 Identities = 305/347 (87%)
 Strand = Plus / Minus

                                                                       
Query: 332 tccgccaccataatgcacgagtccatctccagactcgcggcctcgttgctctcggtgagc 391
           ||||||||||||||||||||||||||||  | ||||||||||| |||| |  ||||||| 
Sbjct: 355 tccgccaccataatgcacgagtccatctttaaactcgcggcctggttgtttccggtgagg 296

                                                                       
Query: 392 gaaggcgctctcggtaaggatagcgcgtcagcggtgcactgtatgtcgggttggatcccg 451
           |||||||| || ||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 295 gaaggcgccctgggtaaggatagcgggtcagcggtgcattgtatgtcgggttggatcccg 236

                                                                       
Query: 452 atatggtcgatttcgtgcagcgccggagagagatactttgcaaccgtgatgaatagagca 511
           | ||||||||||||||||||||| ||||||||||||||||||   |||||||||||||||
Sbjct: 235 acatggtcgatttcgtgcagcgcgggagagagatactttgcaggtgtgatgaatagagca 176

                                                                       
Query: 512 gagccatcatccagctctgtgacactctgtattcttcctttgccaaaggttttgtggcct 571
           |||  ||  | ||| | ||| |||||||||||||||| ||| |  |||||||||||||||
Sbjct: 175 gaggtattgtacagttttgtcacactctgtattcttcttttacagaaggttttgtggcct 116

                                                                       
Query: 572 accagaatagcacggccattgtcatgcagtgccccagccaaaatttcgcttgcactggca 631
           | |||||||| |||| |||||||||||| ||   |||||||||||| | ||| | |||||
Sbjct: 115 aacagaatagtacgggcattgtcatgcaatggtgcagccaaaatttggtttgaattggca 56

                                                          
Query: 632 ctttcttcgttgacaagcaccacaagaggatcatgtgttaaagattg 678
           |||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 55  ctttttttgttgacaagcaccacaagaggatcatgtgttaaagattg 9
to top
>dbj|AK069141.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008K20, full
            insert sequence
          Length = 1951

 Score =  220 bits (111), Expect = 5e-54
 Identities = 318/387 (82%)
 Strand = Plus / Minus

                                                                        
Query: 289  ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 348
            |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 1562 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 1503

                                                                        
Query: 349  cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 408
             || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 1502 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 1443

                                                                        
Query: 409  ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 468
             |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 1442 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 1383

                                                                        
Query: 469  cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 528
            ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 1382 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 1323

                                                                        
Query: 529  tgtgacactctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggcc 588
             || |||||||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| ||
Sbjct: 1322 agtcacactctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgacc 1263

                                                                        
Query: 589  attgtcatgcagtgccccagccaaaatttcgcttgcactggcactttcttcgttgacaag 648
            ||||||||| | ||| || ||||| ||||| |||||||| |||||| |||| ||||||||
Sbjct: 1262 attgtcatgtaatgctcctgccaagatttcacttgcacttgcacttccttcattgacaag 1203

                                       
Query: 649  caccacaagaggatcatgtgttaaaga 675
             || ||||| |||||||||||||||||
Sbjct: 1202 tacgacaaggggatcatgtgttaaaga 1176
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                            
Query: 289      ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 348
                |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 12192541 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 12192482

                                                                            
Query: 349      cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 408
                 || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 12192481 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 12192422

                                                                            
Query: 409      ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 468
                 |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 12192421 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 12192362

                                                                            
Query: 469      cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 528
                ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 12192361 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 12192302

                             
Query: 529      tgtgacactctgt 541
                 || |||||||||
Sbjct: 12192301 agtcacactctgt 12192289



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                            
Query: 538      ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 597
                ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 12192173 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 12192114

                                                                
Query: 598      cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 645
                 | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 12192113 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 12192066



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 644      acaagcaccacaagaggatcatgtgttaaaga 675
                ||||| || ||||| |||||||||||||||||
Sbjct: 12191970 acaagtacgacaaggggatcatgtgttaaaga 12191939
to top
>dbj|AP003543.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0592B08
          Length = 131096

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                         
Query: 289   ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 348
             |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 29563 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 29504

                                                                         
Query: 349   cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 408
              || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 29503 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 29444

                                                                         
Query: 409   ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 468
              |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 29443 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 29384

                                                                         
Query: 469   cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 528
             ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 29383 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 29324

                          
Query: 529   tgtgacactctgt 541
              || |||||||||
Sbjct: 29323 agtcacactctgt 29311



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                         
Query: 538   ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 597
             ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 29195 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 29136

                                                             
Query: 598   cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 645
              | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 29135 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 29088



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 644   acaagcaccacaagaggatcatgtgttaaaga 675
             ||||| || ||||| |||||||||||||||||
Sbjct: 28992 acaagtacgacaaggggatcatgtgttaaaga 28961
to top
>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0468A12
          Length = 143018

 Score =  105 bits (53), Expect = 2e-19
 Identities = 203/253 (80%)
 Strand = Plus / Minus

                                                                          
Query: 289    ctacgaagcagaacccttcgattgctgaatctccaacgcctgctccgccaccataatgca 348
              |||||||||||| ||||| |||| || ||| ||||| || ||||| |||||||| || ||
Sbjct: 135330 ctacgaagcagatccctttgatttctcaatttccaatgcttgctctgccaccatgataca 135271

                                                                          
Query: 349    cgagtccatctccagactcgcggcctcgttgctctcggtgagcgaaggcgctctcggtaa 408
               || |||||||||||| | | ||| | || |  |||  | |||||||| ||||| || ||
Sbjct: 135270 tgaatccatctccagatttgtggctttgtcgtcctcttttagcgaaggtgctcttggcaa 135211

                                                                          
Query: 409    ggatagcgcgtcagcggtgcactgtatgtcgggttggatcccgatatggtcgatttcgtg 468
               |||| |   |||| |||||| |||||||| |||||||| || |  ||||||||||| ||
Sbjct: 135210 agataacatttcaggggtgcattgtatgtcaggttggatgcctacttggtcgatttcatg 135151

                                                                          
Query: 469    cagcgccggagagagatactttgcaaccgtgatgaatagagcagagccatcatccagctc 528
              ||| || ||||||||||| ||||| |||||||| || |||||||| ||||||||||  ||
Sbjct: 135150 cagtgctggagagagatattttgcgaccgtgataaacagagcagatccatcatccaattc 135091

                           
Query: 529    tgtgacactctgt 541
               || |||||||||
Sbjct: 135090 agtcacactctgt 135078



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 92/108 (85%)
 Strand = Plus / Minus

                                                                          
Query: 538    ctgtattcttcctttgccaaaggttttgtggcctaccagaatagcacggccattgtcatg 597
              ||||||| ||||||| ||||| ||| ||||||| |||| ||||||||| |||||||||||
Sbjct: 134962 ctgtatttttccttttccaaaagttctgtggccgaccaaaatagcacgaccattgtcatg 134903

                                                              
Query: 598    cagtgccccagccaaaatttcgcttgcactggcactttcttcgttgac 645
               | ||| || ||||| ||||| |||||||| |||||| |||| |||||
Sbjct: 134902 taatgctcctgccaagatttcacttgcacttgcacttccttcattgac 134855



 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 644    acaagcaccacaagaggatcatgtgttaaaga 675
              ||||| || ||||| |||||||||||||||||
Sbjct: 134759 acaagtacgacaaggggatcatgtgttaaaga 134728
to top
>ref|NM_115628.3| Arabidopsis thaliana protein binding / serine-type peptidase
            AT3G57680 mRNA, complete cds
          Length = 1551

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 608  gccaaaatttcgcttgcactggcactttcttcgttgacaagcaccacaagaggatcatgt 667
            ||||||||||| |||||||| |||||| |||| || |||||||| ||||| |||||||||
Sbjct: 1229 gccaaaatttcacttgcactagcacttccttcattcacaagcacaacaagtggatcatgt 1170

              
Query: 668  gt 669
            ||
Sbjct: 1169 gt 1168
to top
>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon
          Length = 2858

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 584 cggccattgtcatgcagtgccccagccaaaatttc 618
           ||||||||||| || ||||||||||| ||||||||
Sbjct: 263 cggccattgtcttggagtgccccagctaaaatttc 297
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 33       acaacaatacaagttacaatc 53
                |||||||||||||||||||||
Sbjct: 19088221 acaacaatacaagttacaatc 19088201
to top
>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0047A17
          Length = 149142

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 33    acaacaatacaagttacaatc 53
             |||||||||||||||||||||
Sbjct: 93742 acaacaatacaagttacaatc 93722
to top
>dbj|AK069352.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N14, full
            insert sequence
          Length = 3604

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 33   acaacaatacaagttacaatc 53
            |||||||||||||||||||||
Sbjct: 1358 acaacaatacaagttacaatc 1338
to top
>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                        
Query: 593     tcatgcagtgccccagccaaaatttcgcttgcactggcact 633
               |||||||||||  |||| |||||||||  ||||||||||||
Sbjct: 1631410 tcatgcagtgctgcagcaaaaatttcggatgcactggcact 1631450
to top
>gb|AC134926.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0056I10, complete sequence
          Length = 158833

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 455   tggtcgatttcgtgcagcgc 474
             ||||||||||||||||||||
Sbjct: 64351 tggtcgatttcgtgcagcgc 64332
to top
>emb|CR974470.7| L.saxatilis DNA sequence from clone CH317-148L22, complete sequence
          Length = 112797

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   cactctgtattcttcctttg 553
             ||||||||||||||||||||
Sbjct: 26387 cactctgtattcttcctttg 26368
to top
>gb|AC140268.2| Mus musculus BAC clone RP23-321K4 from chromosome 7, complete sequence
          Length = 193572

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 521    tccagctctgtgacactctg 540
              ||||||||||||||||||||
Sbjct: 179913 tccagctctgtgacactctg 179894
to top
>gb|AC124520.4| Mus musculus BAC clone RP23-395G14 from chromosome 7, complete sequence
          Length = 205352

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 521   tccagctctgtgacactctg 540
             ||||||||||||||||||||
Sbjct: 12430 tccagctctgtgacactctg 12411
to top
>emb|AL662837.2| Human DNA sequence from clone RP5-1133A12 on chromosome 1q25.1-31.1
             Contains the 3' end of the DHX9 gene for DEAH
             (Asp-Glu-Ala-His) box polypeptide 9 and the 3' end of a
             gene for a novel protein, complete sequence
          Length = 42262

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 224   tatttatttacagaggtagt 243
             ||||||||||||||||||||
Sbjct: 26217 tatttatttacagaggtagt 26198
to top
>emb|AL132773.14|HSDJ741H3 Human DNA sequence from clone RP4-741H3 on chromosome 20 Contains the
             3' end of the ATRN gene for attractin (with
             dipeptidylpeptidase IV activity) (KIAA0548), ESTs, STSs
             and GSSs, complete sequence
          Length = 104907

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 544   tcttcctttgccaaaggttttgtg 567
             |||||||||||||| |||||||||
Sbjct: 75005 tcttcctttgccaatggttttgtg 75028
to top
>emb|AL049660.1|ATF15B8 Arabidopsis thaliana DNA chromosome 3, BAC clone F15B8
          Length = 94378

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 608   gccaaaatttcgcttgcactggcactttcttc 639
             ||||||||||| |||||||| |||||| ||||
Sbjct: 26832 gccaaaatttcacttgcactagcacttccttc 26863
to top
>emb|CR759923.6| Zebrafish DNA sequence from clone CH211-147L19 in linkage group 21,
             complete sequence
          Length = 147564

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 561   ttttgtggcctaccagaata 580
             ||||||||||||||||||||
Sbjct: 73783 ttttgtggcctaccagaata 73764
to top
>gb|AC104796.4| Homo sapiens BAC clone RP11-318E19 from 4, complete sequence
          Length = 169106

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   atatttatttacagaggtag 242
             ||||||||||||||||||||
Sbjct: 77128 atatttatttacagaggtag 77109
to top
>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence
          Length = 38838

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   cgatttcgtgcagcgccgga 478
             ||||||||||||||||||||
Sbjct: 14591 cgatttcgtgcagcgccgga 14572
to top
>gb|AC104209.7| Homo sapiens chromosome 18, clone RP11-653G8, complete sequence
          Length = 210849

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    tatttatttacagaggtagt 243
              ||||||||||||||||||||
Sbjct: 104286 tatttatttacagaggtagt 104305
to top
>gb|AF038081.1|AF038081 HIV-1 isolate TZB0031 from Tanzania, gp120 C2-C4 region (env) gene,
           partial cds
          Length = 649

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 177 cacactacaatgcagaatacaaca 200
           ||||||||||||||||||| ||||
Sbjct: 406 cacactacaatgcagaataaaaca 429
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 455      tggtcgatttcgtgcagcgc 474
                ||||||||||||||||||||
Sbjct: 18328986 tggtcgatttcgtgcagcgc 18328967
to top
>gb|AF225301.1|AF225301 Bambusicola thoracica clone 4 endogenous ASLV retrovirus gag
           pseudogene, partial sequence
          Length = 826

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 604 cccagccaaaatttcgcttg 623
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
to top
>gb|AF225300.1|AF225300 Bambusicola thoracica clone 3 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 825

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 604 cccagccaaaatttcgcttg 623
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
to top
>gb|AF225299.1|AF225299 Bambusicola thoracica clone 2 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 777

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 604 cccagccaaaatttcgcttg 623
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
to top
>gb|AF225298.1|AF225298 Bambusicola thoracica clone 1 endogenous ASLV retrovirus gag
           polyprotein (gag) gene, partial cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 604 cccagccaaaatttcgcttg 623
           ||||||||||||||||||||
Sbjct: 267 cccagccaaaatttcgcttg 248
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 455      tggtcgatttcgtgcagcgc 474
                ||||||||||||||||||||
Sbjct: 18488387 tggtcgatttcgtgcagcgc 18488368
to top
>emb|CR392357.6| Zebrafish DNA sequence from clone CH211-196I2 in linkage group 21,
             complete sequence
          Length = 136791

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 561   ttttgtggcctaccagaata 580
             ||||||||||||||||||||
Sbjct: 48247 ttttgtggcctaccagaata 48266
to top
>gb|AC145942.4| Gallus gallus BAC clone CH261-21I23 from chromosome unknown, complete
            sequence
          Length = 228603

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 643  gacaagcaccacaagaggat 662
            ||||||||||||||||||||
Sbjct: 3990 gacaagcaccacaagaggat 3971
to top
>dbj|AP002898.1| Homo sapiens genomic DNA, chromosome 20p, clone:13N6, complete sequence
          Length = 206647

 Score = 40.1 bits (20), Expect = 9.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 544   tcttcctttgccaaaggttttgtg 567
             |||||||||||||| |||||||||
Sbjct: 99680 tcttcctttgccaatggttttgtg 99703


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,218,805
Number of Sequences: 3902068
Number of extensions: 5218805
Number of successful extensions: 92999
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92820
Number of HSP's gapped (non-prelim): 178
length of query: 678
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 655
effective length of database: 17,143,297,704
effective search space: 11228859996120
effective search space used: 11228859996120
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top