| Clone Name | rbags39d10 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0072P10, complete sequence Length = 147540 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 306 cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365 |||||| |||||||| | ||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 97480 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 97539 Query: 366 ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417 | | |||||||||||||| |||||| |||| || ||||||||||| |||||| Sbjct: 97540 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 97591
>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05, complete sequence Length = 148785 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 306 cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365 |||||| |||||||| | ||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 147402 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 147461 Query: 366 ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417 | | |||||||||||||| |||||| |||| || ||||||||||| |||||| Sbjct: 147462 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 147513
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 306 cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365 |||||| |||||||| | ||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 19741907 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 19741966 Query: 366 ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417 | | |||||||||||||| |||||| |||| || ||||||||||| |||||| Sbjct: 19741967 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 19742018
>dbj|AK106372.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C11, full insert sequence Length = 1330 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Minus Query: 306 cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365 |||||| |||||||| | ||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 1084 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 1025 Query: 366 ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417 | | |||||||||||||| |||||| |||| || ||||||||||| |||||| Sbjct: 1024 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 973
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 111 bits (56), Expect = 3e-21 Identities = 98/112 (87%) Strand = Plus / Plus Query: 306 cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365 |||||| |||||||| | ||||||||| |||||||||||||| || ||||| |||||||| Sbjct: 20027758 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 20027817 Query: 366 ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417 | | |||||||||||||| |||||| |||| || ||||||||||| |||||| Sbjct: 20027818 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 20027869
>gb|AY118920.1| Drosophila melanogaster LD23608 full insert cDNA Length = 1111 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 425 tctcggtctccagctccttaagcagc 450 ||||| |||||||||||||||||||| Sbjct: 796 tctcgttctccagctccttaagcagc 771
>ref|NM_079111.2| Drosophila melanogaster Tal CG2827-RA (Tal), mRNA Length = 1113 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 425 tctcggtctccagctccttaagcagc 450 ||||| |||||||||||||||||||| Sbjct: 816 tctcgttctccagctccttaagcagc 791
>gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60A-60B, BAC clone BACR28M05, complete sequence Length = 154840 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 425 tctcggtctccagctccttaagcagc 450 ||||| |||||||||||||||||||| Sbjct: 33207 tctcgttctccagctccttaagcagc 33182
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 425 tctcggtctccagctccttaagcagc 450 ||||| |||||||||||||||||||| Sbjct: 463006 tctcgttctccagctccttaagcagc 462981
>gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence (P1s DS03050 (D194) and DS06185 (D246)), complete sequence Length = 98645 Score = 44.1 bits (22), Expect = 0.64 Identities = 25/26 (96%) Strand = Plus / Minus Query: 425 tctcggtctccagctccttaagcagc 450 ||||| |||||||||||||||||||| Sbjct: 95204 tctcgttctccagctccttaagcagc 95179
>emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C18 on chromosome 22q13.3 Contains the KIAA0027 gene, ESTs, STSs, GSSs and seven putative CpG islands, complete sequence Length = 101270 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 552 gcatcttccttttgaatcctc 572 ||||||||||||||||||||| Sbjct: 78575 gcatcttccttttgaatcctc 78555
>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence Length = 194322 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 ttttcctccttgagcagctca 531 ||||||||||||||||||||| Sbjct: 13274 ttttcctccttgagcagctca 13254
>ref|NM_058760.1| Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-63) (tag-63) mRNA, complete cds Length = 1815 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 511 ttttcctccttgagcagctca 531 ||||||||||||||||||||| Sbjct: 1361 ttttcctccttgagcagctca 1341
>gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, complete sequence Length = 163948 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 165 actagaaagcccagcacactg 185 ||||||||||||||||||||| Sbjct: 62008 actagaaagcccagcacactg 61988
>gb|AF015277.1|AF015277 Drosophila mercatorum mercatorum 28S ribosomal RNA gene, partial sequence; and gag-like zinc-finger protein and reverse transcriptase genes, partial cds Length = 3914 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 423 cctctcggtctccagctcctt 443 ||||||||||||||||||||| Sbjct: 1107 cctctcggtctccagctcctt 1087
>emb|AJ893559.1| Trichechus manatus partial ar gene for androgen receptor, exon 1 Length = 1464 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 261 ccagagcagctgaggctctca 281 ||||||||||||||||||||| Sbjct: 935 ccagagcagctgaggctctca 915 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,392,200 Number of Sequences: 3902068 Number of extensions: 6392200 Number of successful extensions: 114810 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 114718 Number of HSP's gapped (non-prelim): 92 length of query: 730 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 707 effective length of database: 17,143,297,704 effective search space: 12120311476728 effective search space used: 12120311476728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)