ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
2gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-21
4dbj|AK106372.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-21
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 111 3e-21
6gb|AY118920.1| Drosophila melanogaster LD23608 full insert cDNA 44 0.64
7ref|NM_079111.2| Drosophila melanogaster Tal CG2827-RA (Tal), mRNA 44 0.64
8gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60... 44 0.64
9gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69... 44 0.64
10gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence (P1s... 44 0.64
11emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C1... 42 2.5
12gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete se... 42 2.5
13ref|NM_058760.1| Caenorhabditis elegans Temporarily Assigned Gen... 42 2.5
14gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, comple... 42 2.5
15gb|AF015277.1|AF015277 Drosophila mercatorum mercatorum 28S ribo... 42 2.5
16emb|AJ893559.1| Trichechus manatus partial ar gene for androgen ... 42 2.5

>gb|AC150698.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0072P10, complete sequence
          Length = 147540

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                         
Query: 306   cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365
             |||||| |||||||| | ||||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 97480 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 97539

                                                                 
Query: 366   ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417
             | | |||||||||||||| |||||| |||| || ||||||||||| ||||||
Sbjct: 97540 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 97591



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>gb|AC134624.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0041I05,
              complete sequence
          Length = 148785

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                          
Query: 306    cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365
              |||||| |||||||| | ||||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 147402 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 147461

                                                                  
Query: 366    ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417
              | | |||||||||||||| |||||| |||| || ||||||||||| ||||||
Sbjct: 147462 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 147513



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                            
Query: 306      cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365
                |||||| |||||||| | ||||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 19741907 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 19741966

                                                                    
Query: 366      ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417
                | | |||||||||||||| |||||| |||| || ||||||||||| ||||||
Sbjct: 19741967 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 19742018



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>dbj|AK106372.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-C11, full
            insert sequence
          Length = 1330

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Minus

                                                                        
Query: 306  cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365
            |||||| |||||||| | ||||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 1084 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 1025

                                                                
Query: 366  ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417
            | | |||||||||||||| |||||| |||| || ||||||||||| ||||||
Sbjct: 1024 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 973



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  111 bits (56), Expect = 3e-21
 Identities = 98/112 (87%)
 Strand = Plus / Plus

                                                                            
Query: 306      cttgcaattctccacgacggccttggatttggtgtacagggacgtcagctgaccctgcct 365
                |||||| |||||||| | ||||||||| |||||||||||||| || ||||| ||||||||
Sbjct: 20027758 cttgcagttctccacaatggccttggacttggtgtacagggaggtgagctgcccctgcct 20027817

                                                                    
Query: 366      ctgtgagaaggcctggctaaagagcctgatatcttgcttgagctcctccatc 417
                | | |||||||||||||| |||||| |||| || ||||||||||| ||||||
Sbjct: 20027818 cagcgagaaggcctggctgaagagcttgatctcctgcttgagctcatccatc 20027869



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>gb|AY118920.1| Drosophila melanogaster LD23608 full insert cDNA
          Length = 1111

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 425 tctcggtctccagctccttaagcagc 450
           ||||| ||||||||||||||||||||
Sbjct: 796 tctcgttctccagctccttaagcagc 771



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>ref|NM_079111.2| Drosophila melanogaster Tal CG2827-RA (Tal), mRNA
          Length = 1113

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 425 tctcggtctccagctccttaagcagc 450
           ||||| ||||||||||||||||||||
Sbjct: 816 tctcgttctccagctccttaagcagc 791



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>gb|AC099018.1| Drosophila melanogaster, chromosome 2R, region 60A-60B, BAC clone
             BACR28M05, complete sequence
          Length = 154840

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 425   tctcggtctccagctccttaagcagc 450
             ||||| ||||||||||||||||||||
Sbjct: 33207 tctcgttctccagctccttaagcagc 33182



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>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete
              sequence
          Length = 598988

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 425    tctcggtctccagctccttaagcagc 450
              ||||| ||||||||||||||||||||
Sbjct: 463006 tctcgttctccagctccttaagcagc 462981



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>gb|AC005267.1|AC005267 Drosophila melanogaster DNA sequence (P1s DS03050 (D194) and DS06185
             (D246)), complete sequence
          Length = 98645

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 425   tctcggtctccagctccttaagcagc 450
             ||||| ||||||||||||||||||||
Sbjct: 95204 tctcgttctccagctccttaagcagc 95179



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>emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C18 on chromosome 22q13.3 Contains
             the KIAA0027 gene, ESTs, STSs, GSSs and seven putative CpG
             islands, complete sequence
          Length = 101270

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 552   gcatcttccttttgaatcctc 572
             |||||||||||||||||||||
Sbjct: 78575 gcatcttccttttgaatcctc 78555



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>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence
          Length = 194322

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 511   ttttcctccttgagcagctca 531
             |||||||||||||||||||||
Sbjct: 13274 ttttcctccttgagcagctca 13254



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>ref|NM_058760.1| Caenorhabditis elegans Temporarily Assigned Gene name family member
            (tag-63) (tag-63) mRNA, complete cds
          Length = 1815

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 511  ttttcctccttgagcagctca 531
            |||||||||||||||||||||
Sbjct: 1361 ttttcctccttgagcagctca 1341



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>gb|AC104650.2| Homo sapiens BAC clone RP11-117J13 from 4, complete sequence
          Length = 163948

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 165   actagaaagcccagcacactg 185
             |||||||||||||||||||||
Sbjct: 62008 actagaaagcccagcacactg 61988



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>gb|AF015277.1|AF015277 Drosophila mercatorum mercatorum 28S ribosomal RNA gene, partial
            sequence; and gag-like zinc-finger protein and reverse
            transcriptase genes, partial cds
          Length = 3914

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 423  cctctcggtctccagctcctt 443
            |||||||||||||||||||||
Sbjct: 1107 cctctcggtctccagctcctt 1087



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>emb|AJ893559.1| Trichechus manatus partial ar gene for androgen receptor, exon 1
          Length = 1464

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 261 ccagagcagctgaggctctca 281
           |||||||||||||||||||||
Sbjct: 935 ccagagcagctgaggctctca 915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,392,200
Number of Sequences: 3902068
Number of extensions: 6392200
Number of successful extensions: 114810
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114718
Number of HSP's gapped (non-prelim): 92
length of query: 730
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 707
effective length of database: 17,143,297,704
effective search space: 12120311476728
effective search space used: 12120311476728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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