>HTS1_COCCA (Q01886) HC-toxin synthetase (EC 6.3.2.-) (HTS)|
          Length = 5218

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +2

Query: 347  HPETSAIVFKNGSDFLSSS----RLLIDHAVTHCTLDGTIFSSSRRRLPRSGMWPPSVQN 514
            H     I+ + GS  + +S    +L +  +V     DG++FSS+++ LP +   PPS   
Sbjct: 4212 HERLEHIISETGSSVIVTSAAYSKLCLSLSVRGIVCDGSVFSSTKKPLPSTADSPPSFSV 4271

Query: 515  R 517
            R
Sbjct: 4272 R 4272

>MURB_BORGA (Q660S4) UDP-N-acetylenolpyruvoylglucosamine reductase (EC|
           1.1.1.158) (UDP-N-acetylmuramate dehydrogenase)
          Length = 306

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +2

Query: 230 PAKDTQFRLFSTRNSQNHRSTARTEEKMSKASVSYLFKGHP--ETSAIVFKNGSDFLSSS 403
           P ++  F +  T  +    +    EEKM+K   + + KGH    +S   FKN   FL  S
Sbjct: 176 PFQNKNFFILKTELNLKKENKKIIEEKMNKNKQARINKGHYLFPSSGSTFKNNKSFLRPS 235

Query: 404 RLLIDHAVTHCTLDG 448
             +I+     C L G
Sbjct: 236 GQIIE----ECKLKG 246

>PST1_YEAST (Q12355) Protoplast secreted protein 1 precursor|
          Length = 444

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 21/71 (29%), Positives = 31/71 (43%)
 Frame = +2

Query: 191 LCQNGALN*SIQEPAKDTQFRLFSTRNSQNHRSTARTEEKMSKASVSYLFKGHPETSAIV 370
           +C+NGA           T  +L ST  SQ+ ++TA+  +  SKA       G  + +A  
Sbjct: 350 VCKNGA---------SSTSVKLSSTSKSQSSQTTAKVSKSSSKAEEKKFTSGDIKAAASA 400

Query: 371 FKNGSDFLSSS 403
               S   SSS
Sbjct: 401 SSVSSSGASSS 411

>TRPA_AQUAE (O67502) Tryptophan synthase alpha chain (EC 4.2.1.20)|
          Length = 262

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
 Frame = +2

Query: 302 EEKMSKASVSYLFKGHP--ETSAIVF----KNGSDFL 394
           +EK  KA VSYL  G+P  ETS   F    KNG+D L
Sbjct: 12  KEKREKALVSYLMVGYPDYETSLKAFKEVLKNGTDIL 48

>DNL4_YEAST (Q08387) DNA ligase 4 (EC 6.5.1.1) (DNA ligase IV)|
           (Polydeoxyribonucleotide synthase [ATP] 4) (DNA ligase
           II)
          Length = 944

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 23/121 (19%)
 Frame = +2

Query: 302 EEKMSKASVSYLFKGHPETSAIVFKNGSDFLS-----------SSRLLIDHAVTHCTLDG 448
           EEKM    +   +  + E+     + G D+             S  L    +V  C LDG
Sbjct: 280 EEKMDGERIQVHYMNYGESIKFFSRRGIDYTYLYGASLSSGTISQHLRFTDSVKECVLDG 339

Query: 449 TI--FSSSRRRLPRSGMWPPSVQNRYS----------PVPSVYRTLYLLSCNSVPLPNYN 592
            +  F + RR +   G+   S +   S          P+  V+  LYL   +  PLP + 
Sbjct: 340 EMVTFDAKRRVILPFGLVKGSAKEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQ 399

Query: 593 R 595
           R
Sbjct: 400 R 400


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,658,261
Number of Sequences: 219361
Number of extensions: 1998041
Number of successful extensions: 5270
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5269
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)