ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38o01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_482167.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1501 Score = 301 bits (152), Expect = 1e-78 Identities = 350/412 (84%), Gaps = 3/412 (0%) Strand = Plus / Minus Query: 194 tgtcaaaatggagcactaaattgatcaatccaggaaccagccaaagatacccaattca-g 252 |||||||||||| || ||||||| |||||||| || |||||||||||| |||| |||| | Sbjct: 1465 tgtcaaaatggaccattaaattgttcaatccatgagccagccaaagatgcccagttcacg 1406 Query: 253 actgttttccacaagaaactcccaaaaccatagatccactgcaagaactgaagaaaagat 312 | || ||||||||| |||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 1405 gcagtac-ccacaagaagctcccagaaccaaagatccactgcgagaactgaagaaaagat 1347 Query: 313 gagcaaagcaagtgtttcgtatctattcaaaggccaccctgaaacctcagccatcgtctt 372 |||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 1346 aagcagagcaagtgtctcgtatctattcaaaggccaccctgagacttcagccatggtctt 1287 Query: 373 caagaatggaagcgattttttatctagctcccggcttcttattgaccatgcagtgaccca 432 || ||||||||| |||| | ||||||||||||||||| ||||||||||| || ||||| Sbjct: 1286 caggaatggaagagattccctgtctagctcccggcttctaattgaccatgctgtcaccca 1227 Query: 433 ttgcacattggatgggaccatattcagctcttctcgaagacgtcttccaaggtctggcat 492 || || | | |||||||||||| |||||||| |||||||||||||| ||||| ||||| Sbjct: 1226 ctggacgtcagctgggaccatattgagctcttcacgaagacgtcttcccaggtccggcat 1167 Query: 493 gtggccaccctccgtacagaaccgctattctcctgtaccctcggtttatcgcacccttta 552 || ||| ||||| || || || ||||||||| ||||||| ||||||| || ||| || Sbjct: 1166 atgccca-cctccataaaggacagctattctcttgtacccatggtttattgcttcctgta 1108 Query: 553 tcttctcagttgcaactctgttcctctccccaattataaccgacttatcctc 604 |||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||| Sbjct: 1107 tcttctcagtagcaactctattcctttccccaatgataactgacttttcctc 1056
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 301 bits (152), Expect = 1e-78 Identities = 350/412 (84%), Gaps = 3/412 (0%) Strand = Plus / Plus Query: 194 tgtcaaaatggagcactaaattgatcaatccaggaaccagccaaagatacccaattca-g 252 |||||||||||| || ||||||| |||||||| || |||||||||||| |||| |||| | Sbjct: 18302392 tgtcaaaatggaccattaaattgttcaatccatgagccagccaaagatgcccagttcacg 18302451 Query: 253 actgttttccacaagaaactcccaaaaccatagatccactgcaagaactgaagaaaagat 312 | || ||||||||| |||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 18302452 gcagtac-ccacaagaagctcccagaaccaaagatccactgcgagaactgaagaaaagat 18302510 Query: 313 gagcaaagcaagtgtttcgtatctattcaaaggccaccctgaaacctcagccatcgtctt 372 |||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 18302511 aagcagagcaagtgtctcgtatctattcaaaggccaccctgagacttcagccatggtctt 18302570 Query: 373 caagaatggaagcgattttttatctagctcccggcttcttattgaccatgcagtgaccca 432 || ||||||||| |||| | ||||||||||||||||| ||||||||||| || ||||| Sbjct: 18302571 caggaatggaagagattccctgtctagctcccggcttctaattgaccatgctgtcaccca 18302630 Query: 433 ttgcacattggatgggaccatattcagctcttctcgaagacgtcttccaaggtctggcat 492 || || | | |||||||||||| |||||||| |||||||||||||| ||||| ||||| Sbjct: 18302631 ctggacgtcagctgggaccatattgagctcttcacgaagacgtcttcccaggtccggcat 18302690 Query: 493 gtggccaccctccgtacagaaccgctattctcctgtaccctcggtttatcgcacccttta 552 || ||| ||||| || || || ||||||||| ||||||| ||||||| || ||| || Sbjct: 18302691 atgccca-cctccataaaggacagctattctcttgtacccatggtttattgcttcctgta 18302749 Query: 553 tcttctcagttgcaactctgttcctctccccaattataaccgacttatcctc 604 |||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||| Sbjct: 18302750 tcttctcagtagcaactctattcctttccccaatgataactgacttttcctc 18302801
>dbj|AP004689.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0434E03 Length = 142414 Score = 301 bits (152), Expect = 1e-78 Identities = 350/412 (84%), Gaps = 3/412 (0%) Strand = Plus / Plus Query: 194 tgtcaaaatggagcactaaattgatcaatccaggaaccagccaaagatacccaattca-g 252 |||||||||||| || ||||||| |||||||| || |||||||||||| |||| |||| | Sbjct: 124704 tgtcaaaatggaccattaaattgttcaatccatgagccagccaaagatgcccagttcacg 124763 Query: 253 actgttttccacaagaaactcccaaaaccatagatccactgcaagaactgaagaaaagat 312 | || ||||||||| |||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 124764 gcagtac-ccacaagaagctcccagaaccaaagatccactgcgagaactgaagaaaagat 124822 Query: 313 gagcaaagcaagtgtttcgtatctattcaaaggccaccctgaaacctcagccatcgtctt 372 |||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 124823 aagcagagcaagtgtctcgtatctattcaaaggccaccctgagacttcagccatggtctt 124882 Query: 373 caagaatggaagcgattttttatctagctcccggcttcttattgaccatgcagtgaccca 432 || ||||||||| |||| | ||||||||||||||||| ||||||||||| || ||||| Sbjct: 124883 caggaatggaagagattccctgtctagctcccggcttctaattgaccatgctgtcaccca 124942 Query: 433 ttgcacattggatgggaccatattcagctcttctcgaagacgtcttccaaggtctggcat 492 || || | | |||||||||||| |||||||| |||||||||||||| ||||| ||||| Sbjct: 124943 ctggacgtcagctgggaccatattgagctcttcacgaagacgtcttcccaggtccggcat 125002 Query: 493 gtggccaccctccgtacagaaccgctattctcctgtaccctcggtttatcgcacccttta 552 || ||| ||||| || || || ||||||||| ||||||| ||||||| || ||| || Sbjct: 125003 atgccca-cctccataaaggacagctattctcttgtacccatggtttattgcttcctgta 125061 Query: 553 tcttctcagttgcaactctgttcctctccccaattataaccgacttatcctc 604 |||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||| Sbjct: 125062 tcttctcagtagcaactctattcctttccccaatgataactgacttttcctc 125113
>dbj|AK105106.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-E10, full insert sequence Length = 1501 Score = 301 bits (152), Expect = 1e-78 Identities = 350/412 (84%), Gaps = 3/412 (0%) Strand = Plus / Minus Query: 194 tgtcaaaatggagcactaaattgatcaatccaggaaccagccaaagatacccaattca-g 252 |||||||||||| || ||||||| |||||||| || |||||||||||| |||| |||| | Sbjct: 1465 tgtcaaaatggaccattaaattgttcaatccatgagccagccaaagatgcccagttcacg 1406 Query: 253 actgttttccacaagaaactcccaaaaccatagatccactgcaagaactgaagaaaagat 312 | || ||||||||| |||||| ||||| ||||||||||| ||||||||||||||||| Sbjct: 1405 gcagtac-ccacaagaagctcccagaaccaaagatccactgcgagaactgaagaaaagat 1347 Query: 313 gagcaaagcaagtgtttcgtatctattcaaaggccaccctgaaacctcagccatcgtctt 372 |||| ||||||||| |||||||||||||||||||||||||| || |||||||| ||||| Sbjct: 1346 aagcagagcaagtgtctcgtatctattcaaaggccaccctgagacttcagccatggtctt 1287 Query: 373 caagaatggaagcgattttttatctagctcccggcttcttattgaccatgcagtgaccca 432 || ||||||||| |||| | ||||||||||||||||| ||||||||||| || ||||| Sbjct: 1286 caggaatggaagagattccctgtctagctcccggcttctaattgaccatgctgtcaccca 1227 Query: 433 ttgcacattggatgggaccatattcagctcttctcgaagacgtcttccaaggtctggcat 492 || || | | |||||||||||| |||||||| |||||||||||||| ||||| ||||| Sbjct: 1226 ctggacgtcagctgggaccatattgagctcttcacgaagacgtcttcccaggtccggcat 1167 Query: 493 gtggccaccctccgtacagaaccgctattctcctgtaccctcggtttatcgcacccttta 552 || ||| ||||| || || || ||||||||| ||||||| ||||||| || ||| || Sbjct: 1166 atgccca-cctccataaaggacagctattctcttgtacccatggtttattgcttcctgta 1108 Query: 553 tcttctcagttgcaactctgttcctctccccaattataaccgacttatcctc 604 |||||||||| |||||||| ||||| |||||||| ||||| ||||| ||||| Sbjct: 1107 tcttctcagtagcaactctattcctttccccaatgataactgacttttcctc 1056
>gb|AC073608.19| Homo sapiens 12 BAC RP11-36P3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 111182 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Minus Query: 256 gttttccacaagaaactcccaaaa 279 |||||||||||||||||||||||| Sbjct: 40330 gttttccacaagaaactcccaaaa 40307
>dbj|BS000052.1| Pan troglodytes chromosome 22 clone:RP43-049N07, map 22, complete sequences Length = 180152 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 104 cagtaaatagttctgtatttttcttt 129 ||||||||||||| |||||||||||| Sbjct: 29250 cagtaaatagttcagtatttttcttt 29225
>dbj|BS000051.1| Pan troglodytes chromosome 22 clone:RP43-089B14, map 22, complete sequences Length = 165502 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 104 cagtaaatagttctgtatttttcttt 129 ||||||||||||| |||||||||||| Sbjct: 148171 cagtaaatagttcagtatttttcttt 148146
>emb|AL845317.7| Mouse DNA sequence from clone RP23-222K9 on chromosome 4 Contains a ribosomal protein L7 (Rpl7) pseudogene, the gene for a novel protein similar to stathmin 1 Stmn1 and a eukaryotic translation initiation factor 3 subunit 8 (Eif3s8) pseudogene, complete sequence Length = 181889 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 293 gcaagaactgaagaaaagatg 313 ||||||||||||||||||||| Sbjct: 66194 gcaagaactgaagaaaagatg 66214
>emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in linkage group 16, complete sequence Length = 215158 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 102 aacagtaaatagttctgtatttttctttg 130 |||||||||||||||||||| ||||||| Sbjct: 30612 aacagtaaatagttctgtatagttctttg 30640
>gb|AC122698.2| Homo sapiens chromosome 5 clone CTD-2313P7, complete sequence Length = 107685 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 250 cagactgttttccacaagaaactcc 274 |||||||||||||||||||| |||| Sbjct: 47379 cagactgttttccacaagaatctcc 47355
>gb|AC010926.12|AC010926 Arabidopsis thaliana chromosome 1 BAC F28P22 genomic sequence, complete sequence Length = 101105 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 303 aagaaaagatgagcaaagcaa 323 ||||||||||||||||||||| Sbjct: 4415 aagaaaagatgagcaaagcaa 4395
>gb|AF506905.1| Solidago sempervirens clone SS5A microsatellite sequence Length = 261 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 atagatccactgcaagaactg 302 ||||||||||||||||||||| Sbjct: 100 atagatccactgcaagaactg 120
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 303 aagaaaagatgagcaaagcaa 323 ||||||||||||||||||||| Sbjct: 8675 aagaaaagatgagcaaagcaa 8695
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 98 ctgcaacagtaaatagttctg 118 ||||||||||||||||||||| Sbjct: 1709662 ctgcaacagtaaatagttctg 1709642
>gb|AC149392.2| Phakopsora pachyrhizi clone JGIAFNA-5B18, complete sequence Length = 36599 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 45 attgttatctacaattttgcatag 68 |||||||||||||||| ||||||| Sbjct: 29502 attgttatctacaattctgcatag 29525
>gb|BT018917.1| Zea mays clone Contig3.F mRNA sequence Length = 1242 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 tgaagaaaagatgagcaaag 320 |||||||||||||||||||| Sbjct: 220 tgaagaaaagatgagcaaag 239
>gb|AC119857.10| Mus musculus chromosome 3, clone RP23-257A18, complete sequence Length = 152106 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cccaattcagactgttttcc 262 |||||||||||||||||||| Sbjct: 82189 cccaattcagactgttttcc 82208
>gb|AC164002.4| Mus musculus chromosome 3, clone RP24-114A9, complete sequence Length = 198340 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 cccaattcagactgttttcc 262 |||||||||||||||||||| Sbjct: 182873 cccaattcagactgttttcc 182854
>gb|AY330643.1|AY330643S1 Helicobacter pylori strain Du23:2 cag pathogenicity island section 1, partial sequence Length = 9863 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 aactgaagaaaagatgagcaaagc 321 ||||||||||||||||| |||||| Sbjct: 5576 aactgaagaaaagatgatcaaagc 5553
>gb|AY330636.1|AY330636S1 Helicobacter pylori strain Ca52 cag pathogenicity island section 1, partial sequence Length = 10839 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 aactgaagaaaagatgagcaaagc 321 ||||||||||||||||| |||||| Sbjct: 6554 aactgaagaaaagatgatcaaagc 6531
>emb|BX045928.1|CNS097LO Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC2BB11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 968 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 ttgcaactctgttcctctcc 581 |||||||||||||||||||| Sbjct: 154 ttgcaactctgttcctctcc 173
>ref|XM_781940.1| PREDICTED: Strongylocentrotus purpuratus similar to myosin light chain kinase isoform 1 (LOC581963), mRNA Length = 8112 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 77 tcaactaatatctcgaactaactgcaac 104 ||||||||||||||||| || ||||||| Sbjct: 2440 tcaactaatatctcgaattatctgcaac 2467
>emb|X92494.1|SCBNI1 S.cerevisiae BNI1, N0647, APL1, N0665, N0670, LYP1, PIK1, N0800, N0809, N0810, N0815, N0820, POL2, and N0830 genes Length = 24152 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtatttttctttggactgtc 137 |||||||||||||||||||| Sbjct: 1667 gtatttttctttggactgtc 1686
>emb|CR380954.1| Candida glabrata strain CBS138 chromosome H complete sequence Length = 1050361 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 aagaatggaagcgattttttatct 397 |||||||||||| ||||||||||| Sbjct: 1033164 aagaatggaagctattttttatct 1033141
>emb|AL672083.7| Zebrafish DNA sequence from clone BUSM1-69G10 in linkage group 1 Contains the 3' end of a novel gene similar to ITSN1 (intersectin long variant, SH3 domain protein), the pknox1.2 gene (pbx/knotted 1 homeobox 1.2), a novel gene similar to TMPRSS3 (transmembrane protease, serine 3), a novel gene similar to PDXK (pyridoxal kinase) and a CpG island, complete sequence Length = 111516 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 gaactgaagaaaagatgagc 316 |||||||||||||||||||| Sbjct: 52102 gaactgaagaaaagatgagc 52121
>emb|AL845255.2| Mouse DNA sequence from clone RP23-298K19 on chromosome 4 Contains a K+ channel tetramerisation domain protein pseudogene and a novel gene, complete sequence Length = 199040 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 cttcatttcccccctttttc 181 |||||||||||||||||||| Sbjct: 158379 cttcatttcccccctttttc 158360
>gb|AC133492.10| Rattus norvegicus clone rp32-478o16, complete sequence Length = 170268 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 gaagaaaagatgagcaaagc 321 |||||||||||||||||||| Sbjct: 23194 gaagaaaagatgagcaaagc 23213
>gb|AC161265.2| Mus musculus BAC clone RP23-271F18 from chromosome 9, complete sequence Length = 203839 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 156 gttaaacttcatttcccccctttt 179 |||||||||| ||||||||||||| Sbjct: 59662 gttaaacttcctttcccccctttt 59639
>gb|AC154363.2| Mus musculus BAC clone RP23-154K12 from chromosome 13, complete sequence Length = 203241 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ctgcaagaactgaagaaaag 310 |||||||||||||||||||| Sbjct: 45042 ctgcaagaactgaagaaaag 45061
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gacaaactctttgtcaaaat 202 |||||||||||||||||||| Sbjct: 15494937 gacaaactctttgtcaaaat 15494956
>dbj|AB120425.1| Helicobacter pylori genes for cag pathogenicity island protein, complete cds, strain:OK112 Length = 37037 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 aactgaagaaaagatgagcaaagc 321 ||||||||||||||||| |||||| Sbjct: 5386 aactgaagaaaagatgatcaaagc 5363
>gb|AC002073.1|AC002073 Human PAC clone RP3-515N1 from 22q11.2-q22, complete sequence Length = 128978 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 agtaaatagttctgtatttt 124 |||||||||||||||||||| Sbjct: 31244 agtaaatagttctgtatttt 31225
>emb|Z71547.1|SCYNL271C S.cerevisiae chromosome XIV reading frame ORF YNL271c Length = 6856 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtatttttctttggactgtc 137 |||||||||||||||||||| Sbjct: 3308 gtatttttctttggactgtc 3327
>emb|Z71546.1|SCYNL270C S.cerevisiae chromosome XIV reading frame ORF YNL270c Length = 6974 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gtatttttctttggactgtc 137 |||||||||||||||||||| Sbjct: 1667 gtatttttctttggactgtc 1686
>dbj|AP002449.4| Homo sapiens genomic DNA, chromosome 18 clone:RP11-773H22, complete sequence Length = 184000 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 aacagtaaatagttctgtattttt 125 ||||||||||| |||||||||||| Sbjct: 100383 aacagtaaatatttctgtattttt 100360
>dbj|AP001676.1| Homo sapiens genomic DNA, chromosome 21q, section 20/105 Length = 340000 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 gtaaatagttctgtatttttcttt 129 ||||||||||| |||||||||||| Sbjct: 85797 gtaaatagttcagtatttttcttt 85774
>dbj|AP000566.4| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-102B11, complete sequence Length = 104542 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 gtaaatagttctgtatttttcttt 129 ||||||||||| |||||||||||| Sbjct: 72099 gtaaatagttcagtatttttcttt 72076
>gb|AC136738.23| Mus musculus chromosome 6, clone RP23-173F22, complete sequence Length = 195153 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 agacagcacttcaactaata 86 |||||||||||||||||||| Sbjct: 141180 agacagcacttcaactaata 141161
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 gacaaactctttgtcaaaat 202 |||||||||||||||||||| Sbjct: 15449220 gacaaactctttgtcaaaat 15449239
>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126680 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gacaaactctttgtcaaaat 202 |||||||||||||||||||| Sbjct: 7550 gacaaactctttgtcaaaat 7531
>gb|AC140470.3| Mus musculus BAC clone RP24-396I22 from 6, complete sequence Length = 166343 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 agacagcacttcaactaata 86 |||||||||||||||||||| Sbjct: 73017 agacagcacttcaactaata 72998
>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome Length = 2905187 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 aagaatggaagcgatttttt 393 |||||||||||||||||||| Sbjct: 1317400 aagaatggaagcgatttttt 1317381
>gb|L31766.1|YSCBNI1A Saccharomyces cerevisiae synthetic lethal 39 (bni1) gene, complete cds Length = 7025 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gtatttttctttggactgtc 137 |||||||||||||||||||| Sbjct: 4094 gtatttttctttggactgtc 4075
>dbj|D38411.1| Saccharomyces cerevisiae DNA for 'Ppf3p', complete cds Length = 6574 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gtatttttctttggactgtc 137 |||||||||||||||||||| Sbjct: 3642 gtatttttctttggactgtc 3623 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,736,298 Number of Sequences: 3902068 Number of extensions: 5736298 Number of successful extensions: 110782 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110566 Number of HSP's gapped (non-prelim): 208 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
