Clone Information

BLAST Search Result

Clone Name	rbags38n23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	571	e-159
2	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	571	e-159
3	gb\|AC133007.4\| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom...	571	e-159
4	dbj\|AK069320.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	571	e-159
5	ref\|XM_470100.1\| Oryza sativa (japonica cultivar-group), mRNA	505	e-140
6	gb\|AC146971.16\| Medicago truncatula clone mth2-128d1, complete s...	52	0.003
7	gb\|AC149489.2\| Medicago truncatula chromosome 2 BAC clone mth2-2...	50	0.011
8	ref\|XM_474637.1\| Oryza sativa (japonica cultivar-group), predic...	46	0.17
9	gb\|AF457080.1\| HIV-1 isolate 00KE_MSA4069 from Kenya, partial ge...	46	0.17
10	emb\|Z99260.2\|SPAC3A11 S.pombe chromosome I cosmid c3A11	46	0.17
11	emb\|AL731589.3\|OSJN00239 Oryza sativa genomic DNA, chromosome 4,...	46	0.17
12	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	46	0.17
13	dbj\|AB017490.1\| Schizosaccharomyces pombe DNA for 2 ORFs, partia...	46	0.17
14	ref\|NM_124641.1\| Arabidopsis thaliana unknown protein AT5G52630 ...	44	0.65
15	ref\|XM_717004.1\| Candida albicans SC5314 hypothetical protein (C...	44	0.65
16	ref\|XM_716843.1\| Candida albicans SC5314 hypothetical protein (C...	44	0.65
17	gb\|DQ015898.1\| Synthetic construct loxP-HIS1-loxP disruption cas...	44	0.65
18	gb\|DQ015895.1\| Candida integrating vector CIp30, complete sequence	44	0.65
19	gb\|DQ015894.1\| Candida integrating vector CIp20, complete sequence	44	0.65
20	gb\|DQ414721.1\| Functional Analysis Plasmid pFA-CaHIS1-MAL2prom-6...	44	0.65
21	gb\|DQ414717.1\| Functional Analysis Plasmid pFA-CaHIS1-MAL2prom-G...	44	0.65
22	gb\|DQ414711.1\| Functional Analysis Plasmid pFA-CaHIS1-AgTEFprom,...	44	0.65
23	gb\|DQ414703.1\| Functional Analysis plasmid pFA-GFP-CaHIS1, compl...	44	0.65
24	gb\|DQ414700.1\| Functional Analysis plasmid pFA-CaHIS1-MET3prom, ...	44	0.65
25	gb\|DQ414697.1\| Functional Analysis plasmid pFA-CaHIS1-MAL2prom, ...	44	0.65
26	gb\|DQ414694.1\| Functional Analysis plasmid pFA-CaHIS1, complete ...	44	0.65
27	dbj\|AB025606.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	44	0.65
28	gb\|AF173955.1\|AF173955 Cloning vector pGEM-HIS1, complete sequence	44	0.65
29	emb\|X83871.1\|CAHIS1GEN C.albicans HIS1 gene for ATP phosphoribos...	44	0.65
30	ref\|NM_126050.1\| Arabidopsis thaliana unknown protein AT5G66520 ...	42	2.6
31	gb\|AY286123.1\| Cyanidioschyzon merolae DBV201 chloroplast, compl...	42	2.6
32	gb\|AC124477.4\| Mus musculus BAC clone RP24-103A12 from chromosom...	42	2.6
33	gb\|AC140547.18\| Medicago truncatula clone mth2-17p16, complete s...	42	2.6
34	dbj\|AB013389.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	2.6
35	emb\|AL646053.1\| Ralstonia solanacearum GMI1000 megaplasmid compl...	42	2.6
36	dbj\|AB002583.1\| Cyanidioschyzon merolae chloroplast DNA, complet...	42	2.6

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  571 bits (288), Expect = e-159
 Identities = 474/536 (88%)
 Strand = Plus / Minus

                                                                            
Query: 197      atcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcggcttacat 256
                |||||||||||||||| || |||||| | |||||| | ||||||||||||||||||||||
Sbjct: 33936715 atcaccaataatcacgacaagagcatctgccatctttaaaatggtgaaagcggcttacat 33936656

                                                                            
Query: 257      ctctgaccacaatctctcgagcagtgacctgggacatcaacttaatagcaacatggcagt 316
                |||||||||||||||| ||| |||| ||||||||||| ||||| ||||| | ||||||||
Sbjct: 33936655 ctctgaccacaatctcccgaccagttacctgggacattaacttgatagctagatggcagt 33936596

                                                                            
Query: 317      catcacacacacgtagattcttcattactcggataggaactccttcaggtaagctcagaa 376
                ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 33936595 catcacatacacgtagattcttcatcactcggataggaactccttcaggtaagctcagaa 33936536

                                                                            
Query: 377      acgcaaatgccatcgccaatttctcactgtggtgagttaaactaacttctttctcctcat 436
                | ||||| || || ||||| ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 33936535 aagcaaacgctattgccaacttctcactgtggtgagacaaactaacttctttctcctcat 33936476

                                                                            
Query: 437      cctccatatcatggaacaccatgctcatgtctggtgcatagccacattgcctgattttgg 496
                ||||||||||||||| ||||||||||||||| |||| ||| ||||| ||||| || ||||
Sbjct: 33936475 cctccatatcatggagcaccatgctcatgtccggtgaatacccacactgcctaatcttgg 33936416

                                                                            
Query: 497      ccatcatttcttccaagtactcatcgatctctccttgccttggatgagatttatctcctg 556
                ||||||| ||||||||  | |||||||||||   ||| |||||||| |||| |||||| |
Sbjct: 33936415 ccatcatctcttccaaacattcatcgatctccttttgtcttggatgcgattcatctccag 33936356

                                                                            
Query: 557      tgcagaactgatgcacttgacccttaagctctacccaactgacaccaggttcctttctca 616
                ||||||| || || |  |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 33936355 tgcagaattggtgtatgtgacccttaagctccacccagctgacaccaggctccttcctca 33936296

                                                                            
Query: 617      cgttcttctccctcatgtttttccttacctcgctgacatctccccatctcctgctggtag 676
                | || || || ||||||  ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 33936295 cattgttatctctcatggcttttcttacctcactgacatctccccatctcctgctggtag 33936236

                                                                        
Query: 677      ctcgaatatttgatagcagaacataaggcgcagaatcttgagggtcaaactcaatg 732
                |||||||||||||||||||||||||||  ||||| || |||||||| |||||||||
Sbjct: 33936235 ctcgaatatttgatagcagaacataagaggcagagtcatgagggtccaactcaatg 33936180

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  571 bits (288), Expect = e-159
 Identities = 474/536 (88%)
 Strand = Plus / Minus

                                                                            
Query: 197      atcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcggcttacat 256
                |||||||||||||||| || |||||| | |||||| | ||||||||||||||||||||||
Sbjct: 34027187 atcaccaataatcacgacaagagcatctgccatctttaaaatggtgaaagcggcttacat 34027128

                                                                            
Query: 257      ctctgaccacaatctctcgagcagtgacctgggacatcaacttaatagcaacatggcagt 316
                |||||||||||||||| ||| |||| ||||||||||| ||||| ||||| | ||||||||
Sbjct: 34027127 ctctgaccacaatctcccgaccagttacctgggacattaacttgatagctagatggcagt 34027068

                                                                            
Query: 317      catcacacacacgtagattcttcattactcggataggaactccttcaggtaagctcagaa 376
                ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 34027067 catcacatacacgtagattcttcatcactcggataggaactccttcaggtaagctcagaa 34027008

                                                                            
Query: 377      acgcaaatgccatcgccaatttctcactgtggtgagttaaactaacttctttctcctcat 436
                | ||||| || || ||||| ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 34027007 aagcaaacgctattgccaacttctcactgtggtgagacaaactaacttctttctcctcat 34026948

                                                                            
Query: 437      cctccatatcatggaacaccatgctcatgtctggtgcatagccacattgcctgattttgg 496
                ||||||||||||||| ||||||||||||||| |||| ||| ||||| ||||| || ||||
Sbjct: 34026947 cctccatatcatggagcaccatgctcatgtccggtgaatacccacactgcctaatcttgg 34026888

                                                                            
Query: 497      ccatcatttcttccaagtactcatcgatctctccttgccttggatgagatttatctcctg 556
                ||||||| ||||||||  | |||||||||||   ||| |||||||| |||| |||||| |
Sbjct: 34026887 ccatcatctcttccaaacattcatcgatctccttttgtcttggatgcgattcatctccag 34026828

                                                                            
Query: 557      tgcagaactgatgcacttgacccttaagctctacccaactgacaccaggttcctttctca 616
                ||||||| || || |  |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 34026827 tgcagaattggtgtatgtgacccttaagctccacccagctgacaccaggctccttcctca 34026768

                                                                            
Query: 617      cgttcttctccctcatgtttttccttacctcgctgacatctccccatctcctgctggtag 676
                | || || || ||||||  ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 34026767 cattgttatctctcatggcttttcttacctcactgacatctccccatctcctgctggtag 34026708

                                                                        
Query: 677      ctcgaatatttgatagcagaacataaggcgcagaatcttgagggtcaaactcaatg 732
                |||||||||||||||||||||||||||  ||||| || |||||||| |||||||||
Sbjct: 34026707 ctcgaatatttgatagcagaacataagaggcagagtcatgagggtccaactcaatg 34026652

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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
              sequence
          Length = 172337

 Score =  571 bits (288), Expect = e-159
 Identities = 474/536 (88%)
 Strand = Plus / Plus

                                                                          
Query: 197    atcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcggcttacat 256
              |||||||||||||||| || |||||| | |||||| | ||||||||||||||||||||||
Sbjct: 120976 atcaccaataatcacgacaagagcatctgccatctttaaaatggtgaaagcggcttacat 121035

                                                                          
Query: 257    ctctgaccacaatctctcgagcagtgacctgggacatcaacttaatagcaacatggcagt 316
              |||||||||||||||| ||| |||| ||||||||||| ||||| ||||| | ||||||||
Sbjct: 121036 ctctgaccacaatctcccgaccagttacctgggacattaacttgatagctagatggcagt 121095

                                                                          
Query: 317    catcacacacacgtagattcttcattactcggataggaactccttcaggtaagctcagaa 376
              ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 121096 catcacatacacgtagattcttcatcactcggataggaactccttcaggtaagctcagaa 121155

                                                                          
Query: 377    acgcaaatgccatcgccaatttctcactgtggtgagttaaactaacttctttctcctcat 436
              | ||||| || || ||||| ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 121156 aagcaaacgctattgccaacttctcactgtggtgagacaaactaacttctttctcctcat 121215

                                                                          
Query: 437    cctccatatcatggaacaccatgctcatgtctggtgcatagccacattgcctgattttgg 496
              ||||||||||||||| ||||||||||||||| |||| ||| ||||| ||||| || ||||
Sbjct: 121216 cctccatatcatggagcaccatgctcatgtccggtgaatacccacactgcctaatcttgg 121275

                                                                          
Query: 497    ccatcatttcttccaagtactcatcgatctctccttgccttggatgagatttatctcctg 556
              ||||||| ||||||||  | |||||||||||   ||| |||||||| |||| |||||| |
Sbjct: 121276 ccatcatctcttccaaacattcatcgatctccttttgtcttggatgcgattcatctccag 121335

                                                                          
Query: 557    tgcagaactgatgcacttgacccttaagctctacccaactgacaccaggttcctttctca 616
              ||||||| || || |  |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 121336 tgcagaattggtgtatgtgacccttaagctccacccagctgacaccaggctccttcctca 121395

                                                                          
Query: 617    cgttcttctccctcatgtttttccttacctcgctgacatctccccatctcctgctggtag 676
              | || || || ||||||  ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 121396 cattgttatctctcatggcttttcttacctcactgacatctccccatctcctgctggtag 121455

                                                                      
Query: 677    ctcgaatatttgatagcagaacataaggcgcagaatcttgagggtcaaactcaatg 732
              |||||||||||||||||||||||||||  ||||| || |||||||| |||||||||
Sbjct: 121456 ctcgaatatttgatagcagaacataagaggcagagtcatgagggtccaactcaatg 121511

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>dbj|AK069320.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C14, full
            insert sequence
          Length = 2822

 Score =  571 bits (288), Expect = e-159
 Identities = 474/536 (88%)
 Strand = Plus / Minus

                                                                        
Query: 197  atcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcggcttacat 256
            |||||||||||||||| || |||||| | |||||| | ||||||||||||||||||||||
Sbjct: 2129 atcaccaataatcacgacaagagcatctgccatctttaaaatggtgaaagcggcttacat 2070

                                                                        
Query: 257  ctctgaccacaatctctcgagcagtgacctgggacatcaacttaatagcaacatggcagt 316
            |||||||||||||||| ||| |||| ||||||||||| ||||| ||||| | ||||||||
Sbjct: 2069 ctctgaccacaatctcccgaccagttacctgggacattaacttgatagctagatggcagt 2010

                                                                        
Query: 317  catcacacacacgtagattcttcattactcggataggaactccttcaggtaagctcagaa 376
            ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 2009 catcacatacacgtagattcttcatcactcggataggaactccttcaggtaagctcagaa 1950

                                                                        
Query: 377  acgcaaatgccatcgccaatttctcactgtggtgagttaaactaacttctttctcctcat 436
            | ||||| || || ||||| ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 1949 aagcaaacgctattgccaacttctcactgtggtgagacaaactaacttctttctcctcat 1890

                                                                        
Query: 437  cctccatatcatggaacaccatgctcatgtctggtgcatagccacattgcctgattttgg 496
            ||||||||||||||| ||||||||||||||| |||| ||| ||||| ||||| || ||||
Sbjct: 1889 cctccatatcatggagcaccatgctcatgtccggtgaatacccacactgcctaatcttgg 1830

                                                                        
Query: 497  ccatcatttcttccaagtactcatcgatctctccttgccttggatgagatttatctcctg 556
            ||||||| ||||||||  | |||||||||||   ||| |||||||| |||| |||||| |
Sbjct: 1829 ccatcatctcttccaaacattcatcgatctccttttgtcttggatgcgattcatctccag 1770

                                                                        
Query: 557  tgcagaactgatgcacttgacccttaagctctacccaactgacaccaggttcctttctca 616
            ||||||| || || |  |||||||||||||| ||||| ||||||||||| ||||| ||||
Sbjct: 1769 tgcagaattggtgtatgtgacccttaagctccacccagctgacaccaggctccttcctca 1710

                                                                        
Query: 617  cgttcttctccctcatgtttttccttacctcgctgacatctccccatctcctgctggtag 676
            | || || || ||||||  ||| |||||||| ||||||||||||||||||||||||||||
Sbjct: 1709 cattgttatctctcatggcttttcttacctcactgacatctccccatctcctgctggtag 1650

                                                                    
Query: 677  ctcgaatatttgatagcagaacataaggcgcagaatcttgagggtcaaactcaatg 732
            |||||||||||||||||||||||||||  ||||| || |||||||| |||||||||
Sbjct: 1649 ctcgaatatttgatagcagaacataagaggcagagtcatgagggtccaactcaatg 1594

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>ref|XM_470100.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2115

 Score =  505 bits (255), Expect = e-140
 Identities = 423/479 (88%)
 Strand = Plus / Minus

                                                                        
Query: 254  catctctgaccacaatctctcgagcagtgacctgggacatcaacttaatagcaacatggc 313
            ||||||||||||||||||| ||| |||| ||||||||||| ||||| ||||| | |||||
Sbjct: 2083 catctctgaccacaatctcccgaccagttacctgggacattaacttgatagctagatggc 2024

                                                                        
Query: 314  agtcatcacacacacgtagattcttcattactcggataggaactccttcaggtaagctca 373
            |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 2023 agtcatcacatacacgtagattcttcatcactcggataggaactccttcaggtaagctca 1964

                                                                        
Query: 374  gaaacgcaaatgccatcgccaatttctcactgtggtgagttaaactaacttctttctcct 433
            |||| ||||| || || ||||| ||||||||||||||||  |||||||||||||||||||
Sbjct: 1963 gaaaagcaaacgctattgccaacttctcactgtggtgagacaaactaacttctttctcct 1904

                                                                        
Query: 434  catcctccatatcatggaacaccatgctcatgtctggtgcatagccacattgcctgattt 493
            |||||||||||||||||| ||||||||||||||| |||| ||| ||||| ||||| || |
Sbjct: 1903 catcctccatatcatggagcaccatgctcatgtccggtgaatacccacactgcctaatct 1844

                                                                        
Query: 494  tggccatcatttcttccaagtactcatcgatctctccttgccttggatgagatttatctc 553
            |||||||||| ||||||||  | |||||||||||   ||| |||||||| |||| |||||
Sbjct: 1843 tggccatcatctcttccaaacattcatcgatctccttttgtcttggatgcgattcatctc 1784

                                                                        
Query: 554  ctgtgcagaactgatgcacttgacccttaagctctacccaactgacaccaggttcctttc 613
            | |||||||| || || |  |||||||||||||| ||||| ||||||||||| ||||| |
Sbjct: 1783 cagtgcagaattggtgtatgtgacccttaagctccacccagctgacaccaggctccttcc 1724

                                                                        
Query: 614  tcacgttcttctccctcatgtttttccttacctcgctgacatctccccatctcctgctgg 673
            |||| || || || ||||||  ||| |||||||| |||||||||||||||||||||||||
Sbjct: 1723 tcacattgttatctctcatggcttttcttacctcactgacatctccccatctcctgctgg 1664

                                                                       
Query: 674  tagctcgaatatttgatagcagaacataaggcgcagaatcttgagggtcaaactcaatg 732
            ||||||||||||||||||||||||||||||  ||||| || |||||||| |||||||||
Sbjct: 1663 tagctcgaatatttgatagcagaacataagaggcagagtcatgagggtccaactcaatg 1605

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>gb|AC146971.16| Medicago truncatula clone mth2-128d1, complete sequence
          Length = 125569

 Score = 52.0 bits (26), Expect = 0.003
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                           
Query: 200   accaataatcacggcaggagcatttcccatctctgaaatggtgaaa 245
             |||| |||||||  || ||||||||||||||| |||||||||||||
Sbjct: 29105 accagtaatcaccacaagagcatttcccatctttgaaatggtgaaa 29150

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>gb|AC149489.2| Medicago truncatula chromosome 2 BAC clone mth2-24b4, complete
            sequence
          Length = 110753

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 295  aacttaatagcaacatggcagtcatcaca 323
            ||||||||||||||||||||||| |||||
Sbjct: 9164 aacttaatagcaacatggcagtcctcaca 9136

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>ref|XM_474637.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                               
Query: 198  tcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcg 248
            ||||||||||||||  || ||||| ||||||||  |||||||||| |||||
Sbjct: 1674 tcaccaataatcaccacaagagcacttcccatccttgaaatggtggaagcg 1624

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>gb|AF457080.1| HIV-1 isolate 00KE_MSA4069 from Kenya, partial genome
          Length = 8825

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 421  acttctttctcctcatcctccat 443
            |||||||||||||||||||||||
Sbjct: 8558 acttctttctcctcatcctccat 8536

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>emb|Z99260.2|SPAC3A11 S.pombe chromosome I cosmid c3A11
          Length = 30562

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 51    tagctaaaattcaaaacagtcaa 73
             |||||||||||||||||||||||
Sbjct: 29101 tagctaaaattcaaaacagtcaa 29123

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>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
             complete sequence
          Length = 144144

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                
Query: 198   tcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcg 248
             ||||||||||||||  || ||||| ||||||||  |||||||||| |||||
Sbjct: 52946 tcaccaataatcaccacaagagcacttcccatccttgaaatggtggaagcg 52996

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 44/51 (86%)
 Strand = Plus / Plus

                                                                  
Query: 198     tcaccaataatcacggcaggagcatttcccatctctgaaatggtgaaagcg 248
               ||||||||||||||  || ||||| ||||||||  |||||||||| |||||
Sbjct: 5076673 tcaccaataatcaccacaagagcacttcccatccttgaaatggtggaagcg 5076723

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>dbj|AB017490.1| Schizosaccharomyces pombe DNA for 2 ORFs, partial cds
          Length = 3021

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 51  tagctaaaattcaaaacagtcaa 73
           |||||||||||||||||||||||
Sbjct: 813 tagctaaaattcaaaacagtcaa 791

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>ref|NM_124641.1| Arabidopsis thaliana unknown protein AT5G52630 mRNA, complete cds
          Length = 1767

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 325  acacgtagattcttcattactcggat 350
            ||||| ||||||||||||||||||||
Sbjct: 1640 acacgcagattcttcattactcggat 1615

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>ref|XM_717004.1| Candida albicans SC5314 hypothetical protein (CaO19_11511), mRNA
          Length = 987

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 909 actaacttctgtctcctcatcctcca 884

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>ref|XM_716843.1| Candida albicans SC5314 hypothetical protein (CaO19_4028), mRNA
          Length = 987

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 909 actaacttctgtctcctcatcctcca 884

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>gb|DQ015898.1| Synthetic construct loxP-HIS1-loxP disruption cassette, complete
           sequence
          Length = 1600

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 273 actaacttctgtctcctcatcctcca 248

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>gb|DQ015895.1| Candida integrating vector CIp30, complete sequence
          Length = 8492

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 417  actaacttctttctcctcatcctcca 442
            |||||||||| |||||||||||||||
Sbjct: 5334 actaacttctgtctcctcatcctcca 5359

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>gb|DQ015894.1| Candida integrating vector CIp20, complete sequence
          Length = 6481

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 417  actaacttctttctcctcatcctcca 442
            |||||||||| |||||||||||||||
Sbjct: 3323 actaacttctgtctcctcatcctcca 3348

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>gb|DQ414721.1| Functional Analysis Plasmid pFA-CaHIS1-MAL2prom-6x-His-tag,
           complete sequence
          Length = 4372

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 74  actaacttctgtctcctcatcctcca 49

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>gb|DQ414717.1| Functional Analysis Plasmid pFA-CaHIS1-MAL2prom-GFP(GA)6, complete
           sequence
          Length = 5114

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 74  actaacttctgtctcctcatcctcca 49

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>gb|DQ414711.1| Functional Analysis Plasmid pFA-CaHIS1-AgTEFprom, complete sequence
          Length = 4202

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 74  actaacttctgtctcctcatcctcca 49

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>gb|DQ414703.1| Functional Analysis plasmid pFA-GFP-CaHIS1, complete sequence
          Length = 4824

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 417  actaacttctttctcctcatcctcca 442
            |||||||||| |||||||||||||||
Sbjct: 1050 actaacttctgtctcctcatcctcca 1025

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>gb|DQ414700.1| Functional Analysis plasmid pFA-CaHIS1-MET3prom, complete sequence
          Length = 5217

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 74  actaacttctgtctcctcatcctcca 49

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>gb|DQ414697.1| Functional Analysis plasmid pFA-CaHIS1-MAL2prom, complete sequence
          Length = 4551

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 74  actaacttctgtctcctcatcctcca 49

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>gb|DQ414694.1| Functional Analysis plasmid pFA-CaHIS1, complete sequence
          Length = 3848

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 74  actaacttctgtctcctcatcctcca 49

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>dbj|AB025606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F6N7
          Length = 74282

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 325   acacgtagattcttcattactcggat 350
             ||||| ||||||||||||||||||||
Sbjct: 31352 acacgcagattcttcattactcggat 31327

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>gb|AF173955.1|AF173955 Cloning vector pGEM-HIS1, complete sequence
          Length = 5558

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 417  actaacttctttctcctcatcctcca 442
            |||||||||| |||||||||||||||
Sbjct: 3007 actaacttctgtctcctcatcctcca 2982

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>emb|X83871.1|CAHIS1GEN C.albicans HIS1 gene for ATP phosphoribosyltransferase
          Length = 1265

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 417 actaacttctttctcctcatcctcca 442
           |||||||||| |||||||||||||||
Sbjct: 32  actaacttctgtctcctcatcctcca 7

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>ref|NM_126050.1| Arabidopsis thaliana unknown protein AT5G66520 mRNA, complete cds
          Length = 1863

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 219  gcatttcccatctctgaaatg 239
            |||||||||||||||||||||
Sbjct: 1842 gcatttcccatctctgaaatg 1822

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>gb|AY286123.1| Cyanidioschyzon merolae DBV201 chloroplast, complete genome
          Length = 149705

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 423    ttctttctcctcatcctccat 443
              |||||||||||||||||||||
Sbjct: 148274 ttctttctcctcatcctccat 148254

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>gb|AC124477.4| Mus musculus BAC clone RP24-103A12 from chromosome 9, complete sequence
          Length = 151238

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 423   ttctttctcctcatcctccat 443
             |||||||||||||||||||||
Sbjct: 88939 ttctttctcctcatcctccat 88919

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>gb|AC140547.18| Medicago truncatula clone mth2-17p16, complete sequence
          Length = 123189

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 414  taaactaacttctttctcctc 434
            |||||||||||||||||||||
Sbjct: 9584 taaactaacttctttctcctc 9604

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>dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1F13
          Length = 83511

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   gcatttcccatctctgaaatg 239
             |||||||||||||||||||||
Sbjct: 42636 gcatttcccatctctgaaatg 42616

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>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence
          Length = 2094509

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 448   tggaacaccatgctcatgtct 468
             |||||||||||||||||||||
Sbjct: 76170 tggaacaccatgctcatgtct 76150

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>dbj|AB002583.1| Cyanidioschyzon merolae chloroplast DNA, complete genome, strain:10D
          Length = 149987

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 423   ttctttctcctcatcctccat 443
             |||||||||||||||||||||
Sbjct: 67077 ttctttctcctcatcctccat 67097


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,233,597
Number of Sequences: 3902068
Number of extensions: 7233597
Number of successful extensions: 145291
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145119
Number of HSP's gapped (non-prelim): 172
length of query: 744
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 721
effective length of database: 17,143,297,704
effective search space: 12360317644584
effective search space used: 12360317644584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result