ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GIDRP_HUMAN (Q7Z5L2) Growth inhibition and differentiation-relat... 31 3.3
2BTD_FUGRU (Q8AV84) Biotinidase precursor (EC 3.5.1.12) 30 4.3
3C12E1_DROME (Q9VGZ0) Probable cytochrome P450 12e1, mitochondria... 30 5.7
4ACOX_PICPA (Q9Y7B1) Acyl-coenzyme A oxidase (EC 1.3.3.6) (Acyl-C... 29 9.7

>GIDRP_HUMAN (Q7Z5L2) Growth inhibition and differentiation-related protein 88|
           (Putative mitochondrial space protein 32.1)
          Length = 792

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -2

Query: 565 DDLHVLHEDTEASVLAANTRFYNAFKN-GDFT 473
           D+LHV HE  + +VLA  T   + FKN GD T
Sbjct: 341 DELHVKHEPPDTAVLAHETHRDSGFKNVGDIT 372



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>BTD_FUGRU (Q8AV84) Biotinidase precursor (EC 3.5.1.12)|
          Length = 504

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -3

Query: 210 MAHGIFAFTMLHTSKNKMLTLSGGLCCILHSRWRYMPSWVILYMTGIY 67
           M +  F F +L+ +  +M   +G  CC L  RW        LY  G +
Sbjct: 354 MMYDPFTFALLNATDGEMRVCNGTFCCYLQYRWVTETGRTELYALGAF 401



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>C12E1_DROME (Q9VGZ0) Probable cytochrome P450 12e1, mitochondrial precursor (EC|
           1.14.-.-) (CYPXIIE1)
          Length = 514

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 451 KGDYVYVVHPGAGRISGYDVVLQSWEMVCNADYEFPLNIELKNIEVHV 308
           +G  +Y + PG  R   +DVVL  + +V   D     N ++ N+E  V
Sbjct: 373 EGIRMYPIGPGTLRRMPHDVVLSGYRVVAGTDVGIAANYQMANMEQFV 420



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>ACOX_PICPA (Q9Y7B1) Acyl-coenzyme A oxidase (EC 1.3.3.6) (Acyl-CoA oxidase)|
          Length = 719

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
 Frame = -2

Query: 454 AKGDYVYVVHPGAGRISGYDVVLQSWE------------MVCNADYEFPLNIELKNIEVH 311
           A G + Y  + G G+     VV  +WE            ++CN      L    K  E  
Sbjct: 423 ACGGHGYSSYSGFGKAYNDWVVQCTWEGDNNILASNAGRLLCN------LLSSCKKKEKK 476

Query: 310 VRGDLGYVTCLELVKTKGKSWGKQIATNV 224
           ++GDL Y+  +  +  +   W KQ  TN+
Sbjct: 477 IKGDLSYLNGISNIDKEAICWNKQSMTNL 505


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,372,606
Number of Sequences: 219361
Number of extensions: 2236922
Number of successful extensions: 5861
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5861
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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