ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38n21 |
|---|---|
| Clone Library Name | barley_pub |
>KSA_PEA (O04408) Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13)| (Ent-copalyl diphosphate synthase) (KSA) Length = 801 Score = 55.5 bits (132), Expect = 1e-07 Identities = 39/125 (31%), Positives = 63/125 (50%), Gaps = 5/125 (4%) Frame = -1 Query: 464 LLVKIIEICGGR-TGEASSMINTIGGACFIQLASFICDNLHHKMLLSQDTEKDEAAMSRM 288 LL++II +C E SM +TI +QL + IC HK+ Q +K+ +S Sbjct: 683 LLIQIINLCSNHWISEGPSMQSTIQH--LLQLTNSIC----HKLSCYQK-DKELKGISCQ 735 Query: 287 EE----KIEASMQELTQNFLRTHDDGTSSETKQTLMSVVRSSYFAAYCPPHIFDRHVSKV 120 E ++E+ MQEL Q + + K T ++ +S Y+AA+C + H++KV Sbjct: 736 ENITNSEVESKMQELVQMVFQKCPNDIDFNVKNTFFTIAKSFYYAAFCDSRTINFHIAKV 795 Query: 119 IFEHV 105 +FE V Sbjct: 796 LFEKV 800
>KSA_ARATH (Q38802) Ent-kaurene synthase A, chloroplast precursor (EC 5.5.1.13)| (Ent-copalyl diphosphate synthase) (KSA) (AtCPS) Length = 802 Score = 37.0 bits (84), Expect = 0.046 Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 3/166 (1%) Frame = -1 Query: 593 INNLLRCAWIEWMMQLINREDDTYDSSVIQAGSCMVHDKQTCLLLVKIIEICGGRTGEAS 414 +NNLL +W +WM + + D+ L+VK+I + + + Sbjct: 668 VNNLLYLSWGDWMEKW-----------------KLYGDEGEGELMVKMIILM-----KNN 705 Query: 413 SMINTIGGACFIQLASF---ICDNLHHKMLLSQDTEKDEAAMSRMEEKIEASMQELTQNF 243 + N F++LA IC L + L ++ ++ E + ME+++ ++ Sbjct: 706 DLTNFFTHTHFVRLAEIINRIC--LPRQYLKARRNDEKEKTIKSMEKEMGKMVE------ 757 Query: 242 LRTHDDGTSSETKQTLMSVVRSSYFAAYCPPHIFDRHVSKVIFEHV 105 L + T + T + V ++ Y+ A C H+ H+SKV+F+ V Sbjct: 758 LALSESDTFRDVSITFLDVAKAFYYFALCGDHL-QTHISKVLFQKV 802
>ATG5_DEBHA (Q6BVI8) Autophagy protein 5| Length = 292 Score = 30.0 bits (66), Expect = 5.7 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = -1 Query: 227 DGTSSETKQTLMSVVRSSYFAAYCPPHI--FDRHVSKVIFEHVF*KKKEITVQW 72 D + K+ L++V R+SYF Y P I F ++ K+ + V+ + + + ++W Sbjct: 27 DDNIKDPKEFLITVYRNSYFPIYFPSVITYFQKYNEKIKYMPVWLEYETVPIKW 80
>FTNB_SHIFL (P0A9A5) Ferritin-like protein 2| Length = 167 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -1 Query: 326 QDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSSE--TKQTLMSVVRSSYFAAYCP 153 ++ E+ + ++++ ++ + + T NFLR + + QT++ VRS+ A CP Sbjct: 92 EEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCP 151 Query: 152 PHIFDRHVSKVI 117 D+HV V+ Sbjct: 152 VQT-DQHVLNVV 162
>FTNB_ECOLI (P0A9A2) Ferritin-like protein 2| Length = 167 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -1 Query: 326 QDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSSE--TKQTLMSVVRSSYFAAYCP 153 ++ E+ + ++++ ++ + + T NFLR + + QT++ VRS+ A CP Sbjct: 92 EEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCP 151 Query: 152 PHIFDRHVSKVI 117 D+HV V+ Sbjct: 152 VQT-DQHVLNVV 162
>FTNB_ECOL6 (P0A9A3) Ferritin-like protein 2| Length = 167 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -1 Query: 326 QDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSSE--TKQTLMSVVRSSYFAAYCP 153 ++ E+ + ++++ ++ + + T NFLR + + QT++ VRS+ A CP Sbjct: 92 EEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCP 151 Query: 152 PHIFDRHVSKVI 117 D+HV V+ Sbjct: 152 VQT-DQHVLNVV 162
>FTNB_ECO57 (P0A9A4) Ferritin-like protein 2| Length = 167 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 2/72 (2%) Frame = -1 Query: 326 QDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSSE--TKQTLMSVVRSSYFAAYCP 153 ++ E+ + ++++ ++ + + T NFLR + + QT++ VRS+ A CP Sbjct: 92 EEYEQRSSTLAQLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCP 151 Query: 152 PHIFDRHVSKVI 117 D+HV V+ Sbjct: 152 VQT-DQHVLNVV 162
>OXYR_ERWCH (Q9X725) Hydrogen peroxide-inducible genes activator| Length = 305 Score = 29.6 bits (65), Expect = 7.4 Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 17/99 (17%) Frame = -1 Query: 506 QAGSCMVHDKQTCLLLVKIIEICGGRTGEASS------MINTIG-----------GACFI 378 QAG +V +T L VK+++ + GEA S +I T+G F Sbjct: 59 QAGLLLVEQARTVLREVKVLKEMASQQGEAMSGPLHIGLIPTVGPYLLPQIIPMLHRAFP 118 Query: 377 QLASFICDNLHHKMLLSQDTEKDEAAMSRMEEKIEASMQ 261 +L ++ + H++L D+ K + A+ M ++ EA ++ Sbjct: 119 KLEMYLHEAQTHQLLAQLDSGKLDCAILAMVKESEAFIE 157
>TRMA_PHOLL (Q7MAX6) tRNA (uracil-5-)-methyltransferase (EC 2.1.1.35)| (tRNA(M-5-U54)-methyltransferase) (RUMT) Length = 366 Score = 29.6 bits (65), Expect = 7.4 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = +3 Query: 126 RDMSIEYVGRAVRSKVTASHDAHQGLLRLAARPII 230 + +E +GRA ++K+T HD +L +A R +I Sbjct: 145 KGFDVELIGRAAKTKITLDHDYIDEVLPVAGRKMI 179
>THSA_AERPE (Q9YDK6) Thermosome subunit alpha (Thermosome subunit 1)| (Chaperonin alpha subunit) Length = 554 Score = 29.6 bits (65), Expect = 7.4 Identities = 22/124 (17%), Positives = 56/124 (45%), Gaps = 11/124 (8%) Frame = -1 Query: 521 DSSVIQAGSCMVHDKQ----TCLLLVKIIEICGGRTGEASSMINTIGGACFIQLASFICD 354 D +V G+ +V + + LLV++ + G+ ++ + + GA + + + Sbjct: 57 DITVTNDGATIVKEMEIQHPAAKLLVEVAKAQDAEVGDGTTSVVVLAGALLEKAEKLLDE 116 Query: 353 NLHHKMLLSQDTEKDEAAMSRMEE-------KIEASMQELTQNFLRTHDDGTSSETKQTL 195 NLH +++ T+ E A+ ++E + ++ ++ + + L + GT E + + Sbjct: 117 NLHPTIIIEGYTKAMEEALRLVDEAAVPVEVEDDSVLRRIAETTLASKFVGTGPERDKII 176 Query: 194 MSVV 183 V+ Sbjct: 177 SMVI 180
>BJ46A_BOTJA (Q9DGI0) Antihemorragic factor BJ46a precursor (Metalloproteinase| inhibitor) Length = 341 Score = 29.6 bits (65), Expect = 7.4 Identities = 19/75 (25%), Positives = 29/75 (38%) Frame = -1 Query: 344 HKMLLSQDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSSETKQTLMSVVRSSYFA 165 H L+ Q EKD I NF+ H+D ++S ++ V ++ Sbjct: 264 HSHLIQQHVEKDS---------ISPEHNNTALNFVHPHNDTSTSHESHEHLAEVPVAFVK 314 Query: 164 AYCPPHIFDRHVSKV 120 P I DRH + V Sbjct: 315 KELPKDISDRHTTPV 329
>CCND2_HUMAN (P30279) G1/S-specific cyclin-D2| Length = 289 Score = 29.3 bits (64), Expect = 9.7 Identities = 17/56 (30%), Positives = 29/56 (51%) Frame = -1 Query: 377 QLASFICDNLHHKMLLSQDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSSE 210 +++S CD L LL++ T D + +E+IEA + Q + + DG+ SE Sbjct: 219 EVSSLTCDALTE--LLAKITNTDVDCLKACQEQIEAVLLNSLQQYRQDQRDGSKSE 272
>ADIP_HUMAN (Q9Y2D8) Afadin- and alpha-actinin-binding protein (ADIP) (Afadin| DIL domain-interacting protein) (SSX2-interacting protein) Length = 614 Score = 29.3 bits (64), Expect = 9.7 Identities = 16/56 (28%), Positives = 28/56 (50%) Frame = -1 Query: 380 IQLASFICDNLHHKMLLSQDTEKDEAAMSRMEEKIEASMQELTQNFLRTHDDGTSS 213 + L F +++ + Q+TEK E + + +E I+ Q L Q +DD T+S Sbjct: 363 VHLEGFNDEDVISRQDHEQETEKLELEIQQCKEMIKTQQQLLQQQLATAYDDDTTS 418 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,482,261 Number of Sequences: 219361 Number of extensions: 1786584 Number of successful extensions: 4622 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4469 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4622 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
