ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38n21 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY551435.1| Hordeum vulgare subsp. vulgare copalyl diphosphate synthase-like protein (CPSL1) mRNA, complete cds Length = 2635 Score = 412 bits (208), Expect = e-112 Identities = 447/526 (84%), Gaps = 3/526 (0%) Strand = Plus / Minus Query: 93 tttctttcaaaacacatgttcaaaaataaccttcgagacatgtctatcgaatatgtgggg 152 ||||||||||||||||||||| ||||| |||||| ||||||| | ||| || | ||| | Sbjct: 2511 tttctttcaaaacacatgttcgaaaatgaccttcaagacatgaccatccaaaacatggag 2452 Query: 153 agggcagtacgcagcaaagtaactgcttctcacgacgctcatcaaggtctgcttcgtctc 212 |||||||| || || |||||| |||||| || | ||||| | ||||||||||||||| Sbjct: 2451 agggcagttagcggcgtagtaacagcttctgacaatgctcaatacggtctgcttcgtctc 2392 Query: 213 gctgctcgtcccatcatcatgagtcc---ggagaaagttctgggtgagttcctgcatgct 269 |||||||| |||||| | || | | |||| | |||| ||| |||||||||||||| Sbjct: 2391 gctgctcgccccatcgccgtgcgccgactggaggacgttccgggcgagttcctgcatgcc 2332 Query: 270 cgcctcgattttctcttccatgcggctcatcgccgcctcatccttttcggtgtcctgaga 329 ||||||||||||||| |||||| ||| || | | |||| | ||| || ||||||||||| Sbjct: 2331 cgcctcgattttctcatccatgtggcgcaccatcacctcgttcttctcagtgtcctgaga 2272 Query: 330 aagtaacatcttgtggtgaaggttgtcacaaataaaggacgcaagttgaataaagcaagc 389 ||||||| ||||| ||||||| ||||||||||| ||||||| || | |||||| || || Sbjct: 2271 aagtaacctcttgcggtgaagactgtcacaaatagaggacgcgagctcaataaaccaggc 2212 Query: 390 accaccaatggtgtttatcatcgatgatgcttcaccggttcgtccaccacaaatctcaat 449 || | | ||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 2211 acaatccatgttgtttatcatcgatgatgcttcaccatatcgtccaccacaaatctcaat 2152 Query: 450 aatttttactaggagcaaacatgtttgtttatcgtgaaccatgcatgaccctgcttgaat 509 |||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct: 2151 aattttgactagaagcaaatatgtttgtttatcatgaaccatgcatgaccctgcttgaat 2092 Query: 510 aacacttgaatcgtacgtgtcatcttctctatttatcagttgcatcatccattcaatcca 569 |||||||| |||| | |||||||| |||||||||||| ||| |||||||||||| ||||| Sbjct: 2091 aacacttgtatcggatgtgtcatcctctctatttatctgttccatcatccattcgatcca 2032 Query: 570 agcgcagcgtaacaaattgttgatgtaaattggtccttcaccaaca 615 ||||| ||||||||||||||||||||| |||||| ||||||||||| Sbjct: 2031 agcgcggcgtaacaaattgttgatgtacattggttcttcaccaaca 1986 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 34 cagcattcttttctatgtacataca 58 ||||||||||||| ||||||||||| Sbjct: 2586 cagcattcttttccatgtacataca 2562
>dbj|AB126932.2| Oryza sativa (japonica cultivar-group) OsCPS mRNA for ent-copalyldiphosphate synthase, partial cds Length = 2323 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 548 gttgcatcatccattcaatccaagc 572 ||||||||||||||||||||||||| Sbjct: 1868 gttgcatcatccattcaatccaagc 1844
>dbj|AK100333.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080N01, full insert sequence Length = 2943 Score = 50.1 bits (25), Expect = 0.009 Identities = 25/25 (100%) Strand = Plus / Minus Query: 548 gttgcatcatccattcaatccaagc 572 ||||||||||||||||||||||||| Sbjct: 2273 gttgcatcatccattcaatccaagc 2249
>gb|AC124558.4| Mus musculus BAC clone RP23-248O8 from chromosome 10, complete sequence Length = 199938 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 397 atggtgtttatcatcgatgatgcttc 422 ||||||||||||||| |||||||||| Sbjct: 191653 atggtgtttatcatcaatgatgcttc 191678
>gb|AC123865.5| Mus musculus BAC clone RP23-365C14 from chromosome 10, complete sequence Length = 212994 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 397 atggtgtttatcatcgatgatgcttc 422 ||||||||||||||| |||||||||| Sbjct: 179513 atggtgtttatcatcaatgatgcttc 179488
>ref|XM_773741.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_68_64294_62621) partial mRNA Length = 1674 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 187 acgctcatcaaggtctgcttcg 208 |||||||||||||||||||||| Sbjct: 1443 acgctcatcaaggtctgcttcg 1464
>gb|AC146775.8| Medicago truncatula clone mth2-95g14, complete sequence Length = 139593 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 84 aatttcttttttctttcaaaac 105 |||||||||||||||||||||| Sbjct: 7395 aatttcttttttctttcaaaac 7416
>emb|AL096829.17|HSJ595K12 Human DNA sequence from clone RP4-595K12 on chromosome 1p31.2-31.3 Contains the 5' end of a novel gene (MGC34032) and a ribosomal protein L29 (RPL29) pseudogene, complete sequence Length = 135983 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 27 ttccttgcagcattcttttctatgta 52 |||||||||||||| ||||||||||| Sbjct: 20910 ttccttgcagcatttttttctatgta 20935
>gb|AC093156.2| Homo sapiens chromosome 1 clone RP11-87O11, complete sequence Length = 198846 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 27 ttccttgcagcattcttttctatgta 52 |||||||||||||| ||||||||||| Sbjct: 936 ttccttgcagcatttttttctatgta 911
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 548 gttgcatcatccattcaatcca 569 |||||||||||||||||||||| Sbjct: 10274102 gttgcatcatccattcaatcca 10274123
>dbj|AP005536.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055M07 Length = 150901 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 548 gttgcatcatccattcaatcca 569 |||||||||||||||||||||| Sbjct: 146468 gttgcatcatccattcaatcca 146489
>dbj|AP004872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0444A09 Length = 125900 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Plus Query: 548 gttgcatcatccattcaatcca 569 |||||||||||||||||||||| Sbjct: 39912 gttgcatcatccattcaatcca 39933
>gb|AY562491.1| Zea mays copalyl diphosphate synthase like-protein (An2) mRNA, complete cds Length = 3460 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 170 agtaactgcttctcacgacgctcatcaaggtctgcttcgtctcgctgct 218 |||||| |||| |||||| ||||| ||||||||| | ||||||||||| Sbjct: 3131 agtaacagcttttcacgatgctcagaaaggtctgccttgtctcgctgct 3083
>gb|AY562490.1| Zea mays copalyl diphosphate synthase like-protein (An2) gene, complete cds Length = 4577 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 170 agtaactgcttctcacgacgctcatcaaggtctgcttcgtctcgctgct 218 |||||| |||| |||||| ||||| ||||||||| | ||||||||||| Sbjct: 4263 agtaacagcttttcacgatgctcagaaaggtctgccttgtctcgctgct 4215
>gb|AC123938.3| Mus musculus BAC clone RP23-412I12 from chromosome 8, complete sequence Length = 193352 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaaca 106 ||||||||||||||||||||| Sbjct: 63904 tttcttttttctttcaaaaca 63924
>gb|AC124582.4| Mus musculus BAC clone RP23-120A15 from 6, complete sequence Length = 183555 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 caaaacacatgttcaaaaata 120 ||||||||||||||||||||| Sbjct: 171992 caaaacacatgttcaaaaata 172012
>gb|AC006635.2| Caenorhabditis elegans cosmid F38G1, complete sequence Length = 24444 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 cttttttctttcaaaacacat 109 ||||||||||||||||||||| Sbjct: 21274 cttttttctttcaaaacacat 21254
>gb|AC120779.24| Mus musculus strain C57BL/6J clone rp23-194d11 map 17, complete sequence Length = 235634 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 586 ttgttgatgtaaattggtcct 606 ||||||||||||||||||||| Sbjct: 142301 ttgttgatgtaaattggtcct 142281
>gb|AC105304.24| Mus musculus strain C57BL/6J clone rp23-71k5 map 17, complete sequence Length = 229816 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 586 ttgttgatgtaaattggtcct 606 ||||||||||||||||||||| Sbjct: 220161 ttgttgatgtaaattggtcct 220181
>gb|AC151425.22| Medicago truncatula clone mth2-4l6, complete sequence Length = 122088 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 tttcttttttctttcaaaaca 106 ||||||||||||||||||||| Sbjct: 109677 tttcttttttctttcaaaaca 109657
>emb|AL356737.9| Human DNA sequence from clone RP11-118A1 on chromosome 13 Contains 2 novel genes, complete sequence Length = 120269 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 cttttttctttcaaaacacat 109 ||||||||||||||||||||| Sbjct: 97499 cttttttctttcaaaacacat 97479
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 284 cttccatgcggctcatcgccg 304 ||||||||||||||||||||| Sbjct: 2617420 cttccatgcggctcatcgccg 2617440
>gb|AC097716.5| Homo sapiens BAC clone RP11-619J20 from 4, complete sequence Length = 127248 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 438 acaaatctcaataatttttac 458 ||||||||||||||||||||| Sbjct: 47449 acaaatctcaataatttttac 47469
>gb|AC156504.5| Mus musculus 10 BAC RP24-315I19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 208535 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaaca 106 ||||||||||||||||||||| Sbjct: 168722 tttcttttttctttcaaaaca 168742
>gb|AC099694.12| Mus musculus, clone RP23-195D9, complete sequence Length = 191204 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 tttcttttttctttcaaaaca 106 ||||||||||||||||||||| Sbjct: 170119 tttcttttttctttcaaaaca 170099
>gb|AC146598.4| Mus musculus BAC clone RP24-129K7 from 6, complete sequence Length = 168141 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 caaaacacatgttcaaaaata 120 ||||||||||||||||||||| Sbjct: 34889 caaaacacatgttcaaaaata 34909
>gb|AC003664.1|AC003664 Homo sapiens chromosome 17, clone hCIT54K19, complete sequence Length = 202233 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaacacatg 110 |||||||||||||| |||||||||| Sbjct: 60919 tttcttttttctttgaaaacacatg 60943
>gb|M84800.1|TOMPRO Lycopersicon exculentum prosystemin gene, exons 1-11 Length = 4526 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 83 taatttcttttttctttcaaa 103 ||||||||||||||||||||| Sbjct: 4164 taatttcttttttctttcaaa 4184
>gb|AC147460.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAb0050G15, complete sequence Length = 126156 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 catcttgtggtgaaggttgt 355 |||||||||||||||||||| Sbjct: 78525 catcttgtggtgaaggttgt 78544
>gb|BC034859.1| Mus musculus GRB2-related adaptor protein 2, mRNA (cDNA clone IMAGE:1448915) Length = 1577 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 358 tttcttttttctttcaaaac 377
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcatcgccgcctcatcct 313 |||||||||||||||||||| Sbjct: 27987 gctcatcgccgcctcatcct 27968
>gb|AY509596.1| Homo sapiens transcription factor Dp-2 (E2F dimerization partner 2) (TFDP2) gene, complete cds Length = 81085 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 154 tttcttttttctttcaaaac 173
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcatcgccgcctcatcct 313 |||||||||||||||||||| Sbjct: 23191506 gctcatcgccgcctcatcct 23191487
>ref|XM_001002330.1| PREDICTED: Mus musculus GRB2-related adaptor protein 2, transcript variant 1 (Grap2), mRNA Length = 2355 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 358 tttcttttttctttcaaaac 377
>gb|AC073644.10| Homo sapiens BAC clone RP11-519M4 from 7, complete sequence Length = 174359 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 tttcaaaacacatgttcaaaaata 120 |||||||||| ||||||||||||| Sbjct: 20244 tttcaaaacaaatgttcaaaaata 20267
>emb|CT010521.4| M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3, complete sequence Length = 104085 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aaacacatgttcaaaaataa 121 |||||||||||||||||||| Sbjct: 32009 aaacacatgttcaaaaataa 31990
>emb|Z73423.1|CEC03A3 Caenorhabditis elegans Cosmid C03A3, complete sequence Length = 40285 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 305 cctcatccttttcggtgtcc 324 |||||||||||||||||||| Sbjct: 15220 cctcatccttttcggtgtcc 15201
>gb|AY223054.1| Schistosoma japonicum clone ZZD122 mRNA sequence Length = 894 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatttcttttttctttcaaa 103 |||||||||||||||||||| Sbjct: 614 aatttcttttttctttcaaa 595
>gb|AC113596.8| Mus musculus chromosome 5, clone RP23-374B20, complete sequence Length = 203500 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atttcttttttctttcaaaa 104 |||||||||||||||||||| Sbjct: 102868 atttcttttttctttcaaaa 102887
>gb|AC142340.1| Pan troglodytes BAC clone RP43-43B11 from 7, complete sequence Length = 173662 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 tttcaaaacacatgttcaaaaata 120 |||||||||| ||||||||||||| Sbjct: 59620 tttcaaaacaaatgttcaaaaata 59597
>gb|AC146570.6| Medicago truncatula clone mth2-103j7, complete sequence Length = 122623 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ttctttcaaaacacatgttc 113 |||||||||||||||||||| Sbjct: 103921 ttctttcaaaacacatgttc 103940
>gb|AC121237.19| Medicago truncatula clone mth2-22g11, complete sequence Length = 127731 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ttgaataacacttgaatcgt 523 |||||||||||||||||||| Sbjct: 24458 ttgaataacacttgaatcgt 24477
>emb|AL357562.17| Human DNA sequence from clone RP13-16D10 on chromosome Xq11.1-12, complete sequence Length = 128965 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 438 acaaatctcaataattttta 457 |||||||||||||||||||| Sbjct: 109184 acaaatctcaataattttta 109165
>emb|AL359204.10| Human DNA sequence from clone RP11-147H13 on chromosome 9 Contains part of the CHAC gene for chorea acanthocytosis, complete sequence Length = 99691 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 ggtaatttcttttttctttc 100 |||||||||||||||||||| Sbjct: 43544 ggtaatttcttttttctttc 43563
>gb|AC123524.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C03, complete sequence Length = 157178 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 catcttgtggtgaaggttgt 355 |||||||||||||||||||| Sbjct: 12369 catcttgtggtgaaggttgt 12388
>emb|AL121993.7|HSDJ776P7 Human DNA sequence from clone RP4-776P7 on chromosome 1p13.1-13.3 Contains the 3' end of a novel gene (FLJ34497), the WDR3 gene for WD repeat domain 3, the 5' end of the GDAP2 gene for ganglioside induced differentiation associated protein 2 and a CPG island, complete sequence Length = 98062 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ttcttttctatgtacataca 58 |||||||||||||||||||| Sbjct: 79088 ttcttttctatgtacataca 79107
>emb|AL022717.2|HS201D7 Human DNA sequence from clone RP1-201D7 on chromosome 6p22.1-22.3 Contains part of a novel gene (FLJ20342), complete sequence Length = 100733 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 atttcttttttctttcaaaa 104 |||||||||||||||||||| Sbjct: 72622 atttcttttttctttcaaaa 72603
>gb|AC008083.23| Homo sapiens 12 BAC RP11-493L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 192046 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 148821 tttcttttttctttcaaaac 148802
>emb|AL671968.17| Mouse DNA sequence from clone RP23-191E3 on chromosome 11 Contains four novel genes, an eukaryotic translation elongation factor 2 (Eef2) pseudogene, a Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (Fau) pseudogene, the Eif4enif1 gene for eukaryotic translation initiation factor 4E nuclear import factor 1, the Drg1 gene for developmentally regulated GTP binding protein 1, the Zfp278 gene for zinc finger protein 278, the 3' end of the Limk2 gene LIM motif-containing protein kinase 2 and five CpG islands, complete sequence Length = 214546 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 432 tccaccacaaatctcaataa 451 |||||||||||||||||||| Sbjct: 206187 tccaccacaaatctcaataa 206168
>gb|AC068506.10| Homo sapiens chromosome 18, clone RP11-96A15, complete sequence Length = 175885 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 taatttcttttttctttcaa 102 |||||||||||||||||||| Sbjct: 95954 taatttcttttttctttcaa 95973
>gb|AC026394.11| Homo sapiens chromosome 10 clone RP11-427O20, complete sequence Length = 174186 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 456 tactaggagcaaacatgttt 475 |||||||||||||||||||| Sbjct: 88954 tactaggagcaaacatgttt 88935
>gb|AC079015.8| Homo sapiens chromosome 8, clone RP11-489O18, complete sequence Length = 157122 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 553 atcatccattcaatccaagc 572 |||||||||||||||||||| Sbjct: 29223 atcatccattcaatccaagc 29204
>gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I20 map mi398, complete sequence Length = 85214 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 atttcttttttctttcaaaa 104 |||||||||||||||||||| Sbjct: 4944 atttcttttttctttcaaaa 4963
>gb|AC004705.3| Arabidopsis thaliana chromosome 2 clone F26C24 map mi398, complete sequence Length = 89840 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 atttcttttttctttcaaaa 104 |||||||||||||||||||| Sbjct: 3800 atttcttttttctttcaaaa 3781
>gb|AC093255.2| Homo sapiens chromosome 5 clone RP11-181G6, complete sequence Length = 95597 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 accacaaatctcaataattt 454 |||||||||||||||||||| Sbjct: 31542 accacaaatctcaataattt 31561
>gb|AC091931.2| Homo sapiens chromosome 5 clone RP11-313L6, complete sequence Length = 185844 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 accacaaatctcaataattt 454 |||||||||||||||||||| Sbjct: 13442 accacaaatctcaataattt 13423
>gb|AC092663.2| Homo sapiens BAC clone RP11-517B1 from 4, complete sequence Length = 110158 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatttcttttttctttcaaa 103 |||||||||||||||||||| Sbjct: 103484 aatttcttttttctttcaaa 103465
>gb|AC012410.10| Homo sapiens chromosome 8, clone RP11-354A3, complete sequence Length = 220715 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 320 tgtcctgagaaagtaacatc 339 |||||||||||||||||||| Sbjct: 169597 tgtcctgagaaagtaacatc 169578
>emb|BX294132.11| Zebrafish DNA sequence from clone DKEY-16L23 in linkage group 2, complete sequence Length = 166384 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 tttttctttcaaaacacatg 110 |||||||||||||||||||| Sbjct: 38999 tttttctttcaaaacacatg 39018
>gb|AC150776.2| Medicago truncatula chromosome 7 BAC clone mte1-45n16, complete sequence Length = 107886 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 82 gtaatttcttttttctttca 101 |||||||||||||||||||| Sbjct: 65685 gtaatttcttttttctttca 65666
>gb|AF310755.1|AF310755 Alpheus malleator 98-57 glucose-6-phosphate isomerase (GPI) mRNA, partial cds Length = 466 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 aagtaacatcttgtggtgaaggttgtca 357 |||||||| |||||||||||| |||||| Sbjct: 214 aagtaacagcttgtggtgaagattgtca 187
>gb|AF310754.1|AF310754 Alpheus malleator 98-265 glucose-6-phosphate isomerase (GPI) mRNA, partial cds Length = 466 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 330 aagtaacatcttgtggtgaaggttgtca 357 |||||||| |||||||||||| |||||| Sbjct: 214 aagtaacagcttgtggtgaagattgtca 187
>gb|AC159745.5| Mus musculus 6 BAC RP23-394N3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185824 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 aatttcttttttctttcaaa 103 |||||||||||||||||||| Sbjct: 8477 aatttcttttttctttcaaa 8496
>gb|AC147774.3| Medicago truncatula chromosome 2 BAC clone mth2-10c8, complete sequence Length = 110758 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 gtaatttcttttttctttca 101 |||||||||||||||||||| Sbjct: 52961 gtaatttcttttttctttca 52980
>gb|AC154909.4| Mus musculus BAC clone RP23-185B22 from chromosome 8, complete sequence Length = 195479 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 aacatcttgtggtgaaggtt 353 |||||||||||||||||||| Sbjct: 87174 aacatcttgtggtgaaggtt 87193
>gb|AC151906.3| Mus musculus BAC clone RP23-177B17 from chromosome 9, complete sequence Length = 215508 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 ggtaatttcttttttctttc 100 |||||||||||||||||||| Sbjct: 201027 ggtaatttcttttttctttc 201008
>gb|AC016080.5|AC016080 Homo sapiens, clone RP11-23N14, complete sequence Length = 176921 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 320 tgtcctgagaaagtaacatc 339 |||||||||||||||||||| Sbjct: 30166 tgtcctgagaaagtaacatc 30185
>gb|AC153435.6| Mus musculus 6 BAC RP23-112L19 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 212041 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 aatttcttttttctttcaaa 103 |||||||||||||||||||| Sbjct: 66449 aatttcttttttctttcaaa 66430
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 taatttcttttttctttcaaaaca 106 |||||| ||||||||||||||||| Sbjct: 7252084 taatttattttttctttcaaaaca 7252061
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 catcttgtggtgaaggttgt 355 |||||||||||||||||||| Sbjct: 6229091 catcttgtggtgaaggttgt 6229110
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 gctcatcgccgcctcatcct 313 |||||||||||||||||||| Sbjct: 23184534 gctcatcgccgcctcatcct 23184515
>gb|AC093522.4| Homo sapiens chromosome 16 clone RP11-172I18, complete sequence Length = 162017 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 cattcttttctatgtacata 56 |||||||||||||||||||| Sbjct: 51074 cattcttttctatgtacata 51093
>gb|AC133435.2| Homo sapiens 3 BAC RP11-343B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116556 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 96160 tttcttttttctttcaaaac 96179
>gb|AC019183.3|AC019183 Homo sapiens BAC clone RP11-291G24 from 18, complete sequence Length = 183082 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 taatttcttttttctttcaa 102 |||||||||||||||||||| Sbjct: 33607 taatttcttttttctttcaa 33588
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 atgagtccggagaaagttct 250 |||||||||||||||||||| Sbjct: 136410 atgagtccggagaaagttct 136429
>gb|AC005774.1|AC005774 Homo sapiens chromosome 16, BAC clone 26O3 (LANL), complete sequence Length = 164538 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 cattcttttctatgtacata 56 |||||||||||||||||||| Sbjct: 3896 cattcttttctatgtacata 3877
>gb|AC008109.6|AC008109 Homo sapiens chromosome 18, clone RP11-476K15, complete sequence Length = 166819 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 taatttcttttttctttcaa 102 |||||||||||||||||||| Sbjct: 21257 taatttcttttttctttcaa 21276
>gb|AY109636.1| Zea mays CL2355_1 mRNA sequence Length = 2797 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 ttcgtccaccacaaatctcaataa 451 |||||||| ||||||||||||||| Sbjct: 2247 ttcgtccagcacaaatctcaataa 2224
>emb|BX001053.7| Mouse DNA sequence from clone RP23-199B9 on chromosome 4, complete sequence Length = 111777 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 tttctttcaaaacacatgtt 112 |||||||||||||||||||| Sbjct: 78398 tttctttcaaaacacatgtt 78379
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 catcttgtggtgaaggttgt 355 |||||||||||||||||||| Sbjct: 6295558 catcttgtggtgaaggttgt 6295577
>emb|AL606994.3|OSJN00114 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0035O13, complete sequence Length = 143298 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 83 taatttcttttttctttcaaaaca 106 |||||| ||||||||||||||||| Sbjct: 115821 taatttattttttctttcaaaaca 115798
>gb|AC004242.1|AC004242 Homo sapiens 12q13 PAC RPCI1-316M24 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 104913 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 4482 tttcttttttctttcaaaac 4501
>gb|AC147041.3| Mus musculus BAC clone RP23-129J8 from 15, complete sequence Length = 190287 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 76720 tttcttttttctttcaaaac 76701
>dbj|AB231867.1| Nematostella vectensis gene for zinc finger protein Nv-ZicA, complete cds Length = 186420 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 83 taatttcttttttctttcaaaaca 106 |||||| ||||||||||||||||| Sbjct: 139156 taattttttttttctttcaaaaca 139179
>dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT06K23, TM0391, complete sequence Length = 98505 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 92258 tttcttttttctttcaaaac 92239
>dbj|AP006129.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT27K02, TM0225, complete sequence Length = 70805 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tttcttttttctttcaaaac 105 |||||||||||||||||||| Sbjct: 49173 tttcttttttctttcaaaac 49154
>gb|L37750.1|MZEAN1A Zea mays kaurene synthase A (An1) mRNA, complete cds Length = 2797 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 428 ttcgtccaccacaaatctcaataa 451 |||||||| ||||||||||||||| Sbjct: 2247 ttcgtccagcacaaatctcaataa 2224 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,645,773 Number of Sequences: 3902068 Number of extensions: 6645773 Number of successful extensions: 207510 Number of sequences better than 10.0: 87 Number of HSP's better than 10.0 without gapping: 87 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206853 Number of HSP's gapped (non-prelim): 655 length of query: 617 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 594 effective length of database: 17,143,297,704 effective search space: 10183118836176 effective search space used: 10183118836176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
