| Clone Name | rbags38n13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK071500.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093C11, full insert sequence Length = 1425 Score = 79.8 bits (40), Expect = 3e-12 Identities = 84/99 (84%) Strand = Plus / Minus Query: 96 ctccaactggagatcttatatgccgatcttcttctggtacttntggatttgattcaagaa 155 ||||||||| ||| ||||||| || |||| ||||| | |||| ||||||||||||||||| Sbjct: 1143 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 1084 Query: 156 gagccacgtcatcatgacatgcggggcgatcctgacaca 194 | ||| |||||||| ||||| || || ||||||||||| Sbjct: 1083 tatccatgtcatcatcacatggggagcaatcctgacaca 1045
>dbj|AK059612.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-F09, full insert sequence Length = 1359 Score = 79.8 bits (40), Expect = 3e-12 Identities = 84/99 (84%) Strand = Plus / Minus Query: 96 ctccaactggagatcttatatgccgatcttcttctggtacttntggatttgattcaagaa 155 ||||||||| ||| ||||||| || |||| ||||| | |||| ||||||||||||||||| Sbjct: 1069 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 1010 Query: 156 gagccacgtcatcatgacatgcggggcgatcctgacaca 194 | ||| |||||||| ||||| || || ||||||||||| Sbjct: 1009 tatccatgtcatcatcacatggggagcaatcctgacaca 971
>gb|BT016874.1| Zea mays clone Contig707 mRNA sequence Length = 1051 Score = 73.8 bits (37), Expect = 2e-10 Identities = 69/80 (86%) Strand = Plus / Plus Query: 112 tatatgccgatcttcttctggtacttntggatttgattcaagaagagccacgtcatcatg 171 ||||||||||||||||||| |||| ||||| ||||||||||| | ||| ||||||||| Sbjct: 350 tatatgccgatcttcttctcaaacttctggatctgattcaagaatatccaggtcatcatg 409 Query: 172 acatgcggggcgatcctgac 191 ||||| || || |||||||| Sbjct: 410 acatggggtgcaatcctgac 429
>gb|BT016861.1| Zea mays clone Contig694 mRNA sequence Length = 1412 Score = 73.8 bits (37), Expect = 2e-10 Identities = 69/80 (86%) Strand = Plus / Plus Query: 112 tatatgccgatcttcttctggtacttntggatttgattcaagaagagccacgtcatcatg 171 ||||||||||||||||||| |||| ||||| ||||||||||| | ||| ||||||||| Sbjct: 354 tatatgccgatcttcttctcaaacttctggatctgattcaagaatatccaggtcatcatg 413 Query: 172 acatgcggggcgatcctgac 191 ||||| || || |||||||| Sbjct: 414 acatggggtgcaatcctgac 433
>gb|AY103946.1| Zea mays PCO074099 mRNA sequence Length = 1530 Score = 73.8 bits (37), Expect = 2e-10 Identities = 69/80 (86%) Strand = Plus / Minus Query: 112 tatatgccgatcttcttctggtacttntggatttgattcaagaagagccacgtcatcatg 171 ||||||||||||||||||| |||| ||||| ||||||||||| | ||| ||||||||| Sbjct: 1089 tatatgccgatcttcttctcaaacttctggatctgattcaagaatatccaggtcatcatg 1030 Query: 172 acatgcggggcgatcctgac 191 ||||| || || |||||||| Sbjct: 1029 acatggggtgcaatcctgac 1010
>dbj|AK103990.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B11, full insert sequence Length = 871 Score = 71.9 bits (36), Expect = 7e-10 Identities = 83/99 (83%) Strand = Plus / Minus Query: 96 ctccaactggagatcttatatgccgatcttcttctggtacttntggatttgattcaagaa 155 ||||||||| ||| ||||||| || |||| ||||| | |||| ||||||||||||||||| Sbjct: 590 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 531 Query: 156 gagccacgtcatcatgacatgcggggcgatcctgacaca 194 | ||| |||||||| ||||| || || |||||| |||| Sbjct: 530 tatccatgtcatcatcacatggggagcaatcctggcaca 492
>emb|AJ311779.1|NTA311779 Nicotiana tabacum partial mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc4 gene) Length = 908 Score = 65.9 bits (33), Expect = 4e-08 Identities = 59/68 (86%) Strand = Plus / Minus Query: 135 cttntggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||| |||||||| || | ||| | |||||||||||||||||| ||||| ||||| ||||| Sbjct: 658 cttctggatttggttaaggaatatccacgtcatcatgacatgaggggcaatcctaacaca 599 Query: 195 atatactg 202 |||||||| Sbjct: 598 atatactg 591
>gb|AY644469.1| Saccharum officinarum mitochondrial 2-oxoglutarate/malate translocator mRNA, complete cds; nuclear gene for mitochondrial product Length = 1416 Score = 63.9 bits (32), Expect = 2e-07 Identities = 70/83 (84%) Strand = Plus / Minus Query: 112 tatatgccgatcttcttctggtacttntggatttgattcaagaagagccacgtcatcatg 171 |||||||| |||||||||| ||| ||||| ||||||||||| | ||| ||||||||| Sbjct: 1091 tatatgccaatcttcttctcaatcttctggatctgattcaagaatatccaggtcatcatg 1032 Query: 172 acatgcggggcgatcctgacaca 194 ||||| || || ||||||||||| Sbjct: 1031 acatggggtgcaatcctgacaca 1009
>gb|AC104280.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1430_B02, complete sequence Length = 75456 Score = 60.0 bits (30), Expect = 3e-06 Identities = 62/73 (84%) Strand = Plus / Minus Query: 96 ctccaactggagatcttatatgccgatcttcttctggtacttntggatttgattcaagaa 155 ||||||||| ||| ||||||| || |||| ||||| | |||| ||||||||||||||||| Sbjct: 53309 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 53250 Query: 156 gagccacgtcatc 168 | ||| |||||| Sbjct: 53249 tatccatgtcatc 53237
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 60.0 bits (30), Expect = 3e-06 Identities = 62/73 (84%) Strand = Plus / Minus Query: 96 ctccaactggagatcttatatgccgatcttcttctggtacttntggatttgattcaagaa 155 ||||||||| ||| ||||||| || |||| ||||| | |||| ||||||||||||||||| Sbjct: 6615255 ctccaactgaagaccttatattccaatctgcttctcgaacttctggatttgattcaagaa 6615196 Query: 156 gagccacgtcatc 168 | ||| |||||| Sbjct: 6615195 tatccatgtcatc 6615183
>emb|AJ311778.1|NTA311778 Nicotiana tabacum mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc3 gene) Length = 1144 Score = 58.0 bits (29), Expect = 1e-05 Identities = 58/68 (85%) Strand = Plus / Minus Query: 135 cttntggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||| |||||||| || | ||| | |||||||||||||||||| || || ||||| ||||| Sbjct: 903 cttctggatttggttaaggaatatccacgtcatcatgacatgaggcgcaatcctaacaca 844 Query: 195 atatactg 202 |||||||| Sbjct: 843 atatactg 836
>gb|BT013008.1| Lycopersicon esculentum clone 114243R, mRNA sequence Length = 1356 Score = 52.0 bits (26), Expect = 7e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactg 202 ||||| ||| |||||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 975 gaagatccaagtcatcataacatgaggggcaatcctaacacaatatactg 926
>gb|DQ056436.1| Lycopersicon esculentum oxoglutarate/malate translocator (ACI36) mRNA, complete cds Length = 1339 Score = 52.0 bits (26), Expect = 7e-04 Identities = 44/50 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacacaatatactg 202 ||||| ||| |||||||| ||||| ||||| ||||| ||||||||||||| Sbjct: 879 gaagatccaagtcatcataacatgaggggcaatcctaacacaatatactg 830
>dbj|D45075.1|PNI2OMTC Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 2371 Score = 52.0 bits (26), Expect = 7e-04 Identities = 52/61 (85%) Strand = Plus / Minus Query: 134 acttntggatttgattcaagaagagccacgtcatcatgacatgcggggcgatcctgacac 193 |||| ||||| ||||||||||| | ||| |||| |||||||||||| || ||||| |||| Sbjct: 2041 acttctggatctgattcaagaatatccaggtcaacatgacatgcggagcaatcctcacac 1982 Query: 194 a 194 | Sbjct: 1981 a 1981
>ref|NM_121981.3| Arabidopsis thaliana binding / oxidative phosphorylation uncoupler AT5G19760 mRNA, complete cds Length = 1521 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 1001 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 960
>gb|AY700673.1| Helianthus tuberosus putative dicarboxylate/tricarboxylate carrier mRNA, partial cds Length = 669 Score = 44.1 bits (22), Expect = 0.16 Identities = 34/38 (89%) Strand = Plus / Minus Query: 165 catcatgacatgcggggcgatcctgacacaatatactg 202 ||||||||| || || |||||||| ||||||||||||| Sbjct: 669 catcatgacgtggggagcgatcctaacacaatatactg 632
>gb|AY056307.1| Arabidopsis thaliana putative oxoglutarate/malate translocator protein (At5g19760) mRNA, complete cds Length = 928 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 855 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 814
>gb|AF360153.1| Arabidopsis thaliana putative oxoglutarate/malate translocator protein (At5g19760) mRNA, complete cds Length = 1219 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 964 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 923
>emb|BX830426.1|CNS0A1DP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB7ZD04 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1157 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 949 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 908
>emb|BX831268.1|CNS0A0UC Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS73ZB11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1270 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 950 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 909
>emb|BX831238.1|CNS0A0TV Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS70ZD06 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1160 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 949 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 908
>gb|AY085901.1| Arabidopsis thaliana clone 19510 mRNA, complete sequence Length = 1166 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 964 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 923
>emb|AJ311780.1|ATH311780 Arabidopsis thaliana mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc gene) Length = 1192 Score = 44.1 bits (22), Expect = 0.16 Identities = 37/42 (88%) Strand = Plus / Minus Query: 153 gaagagccacgtcatcatgacatgcggggcgatcctgacaca 194 ||||| ||| ||||||||||| || ||||| ||||||||||| Sbjct: 948 gaagatccatgtcatcatgacgtgaggggcaatcctgacaca 907
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 42.1 bits (21), Expect = 0.64 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 taaaactctgtctaccaaaaa 31 ||||||||||||||||||||| Sbjct: 161118 taaaactctgtctaccaaaaa 161098
>gb|AC120406.27| Mus musculus chromosome 12, clone RP24-418L10, complete sequence Length = 198624 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ctctgtctaccaaaaacaac 35 |||||||||||||||||||| Sbjct: 67519 ctctgtctaccaaaaacaac 67500
>ref|XM_867954.1| PREDICTED: Bos taurus similar to jumonji domain containing 1B, transcript variant 1 (LOC534005), mRNA Length = 6330 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gagatgcaaagctgctgaaa 60 |||||||||||||||||||| Sbjct: 1656 gagatgcaaagctgctgaaa 1637
>ref|XM_881052.1| PREDICTED: Bos taurus similar to jumonji domain containing 1B, transcript variant 3 (LOC534005), mRNA Length = 5013 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gagatgcaaagctgctgaaa 60 |||||||||||||||||||| Sbjct: 388 gagatgcaaagctgctgaaa 369
>ref|XM_881032.1| PREDICTED: Bos taurus similar to jumonji domain containing 1B, transcript variant 2 (LOC534005), mRNA Length = 4872 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gagatgcaaagctgctgaaa 60 |||||||||||||||||||| Sbjct: 388 gagatgcaaagctgctgaaa 369
>gb|AC104880.13| Mus musculus chromosome 12, clone RP23-141H24, complete sequence Length = 206848 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 ctctgtctaccaaaaacaac 35 |||||||||||||||||||| Sbjct: 28075 ctctgtctaccaaaaacaac 28094
>ref|XM_531921.2| PREDICTED: Canis familiaris similar to jumonji domain containing 1B (LOC474695), mRNA Length = 6117 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gagatgcaaagctgctgaaa 60 |||||||||||||||||||| Sbjct: 1732 gagatgcaaagctgctgaaa 1713
>gb|AC117391.8| Homo sapiens 3 BAC RP11-3J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170008 Score = 40.1 bits (20), Expect = 2.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 124 ttcttctggtacttntggatttg 146 |||||||||||||| |||||||| Sbjct: 138812 ttcttctggtacttttggatttg 138834
>emb|X99853.1|STOXMATR S.tuberosum mRNA for oxoglutarate malate translocator Length = 1398 Score = 40.1 bits (20), Expect = 2.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 163 gtcatcatgacatgcggggcgatcctgacacaatatactg 202 |||||||| ||||| ||||| ||||| | ||||||||||| Sbjct: 879 gtcatcataacatgaggggcaatcctaatacaatatactg 840
>emb|AJ299250.1|NTA299250 Nicotiana tabacum mRNA for mitochondrial 2-oxoglutarate/malate carrier (momc1 gene) Length = 1297 Score = 40.1 bits (20), Expect = 2.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 163 gtcatcatgacatgcggggcgatcctgacacaatatactg 202 |||||||| ||||| || || ||||| ||||||||||||| Sbjct: 915 gtcatcataacatgaggagcaatcctaacacaatatactg 876
>dbj|AP006391.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09E08, TM0265, complete sequence Length = 100864 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 cgatcctgacacaatatact 201 |||||||||||||||||||| Sbjct: 91519 cgatcctgacacaatatact 91500
>emb|AJ311777.1|NTA311777 Nicotiana tabacum partial mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc2 gene) Length = 1193 Score = 40.1 bits (20), Expect = 2.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 163 gtcatcatgacatgcggggcgatcctgacacaatatactg 202 |||||||| ||||| || || ||||| ||||||||||||| Sbjct: 836 gtcatcataacatgaggagcaatcctaacacaatatactg 797
>emb|AJ311776.1|NTA311776 Nicotiana tabacum mRNA for mitochondrial dicarboxylate/tricarboxylate carrier (dtc1 gene) Length = 1230 Score = 40.1 bits (20), Expect = 2.5 Identities = 35/40 (87%) Strand = Plus / Minus Query: 163 gtcatcatgacatgcggggcgatcctgacacaatatactg 202 |||||||| ||||| || || ||||| ||||||||||||| Sbjct: 899 gtcatcataacatgaggagcaatcctaacacaatatactg 860
>dbj|D45074.1|PNI2OMTB Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 1783 Score = 40.1 bits (20), Expect = 2.5 Identities = 37/43 (86%) Strand = Plus / Minus Query: 134 acttntggatttgattcaagaagagccacgtcatcatgacatg 176 |||| ||||| ||||||||||| | ||| |||| ||||||||| Sbjct: 1494 acttctggatctgattcaagaatatccaagtcaacatgacatg 1452
>dbj|D45073.1|PNI2OMTA Panicum miliaceum mRNA for 2-oxoglutarate/malate translocator, complete cds Length = 1446 Score = 40.1 bits (20), Expect = 2.5 Identities = 37/43 (86%) Strand = Plus / Minus Query: 134 acttntggatttgattcaagaagagccacgtcatcatgacatg 176 |||| ||||| ||||||||||| | ||| |||| ||||||||| Sbjct: 1021 acttctggatctgattcaagaatatccaagtcaacatgacatg 979 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,888,690 Number of Sequences: 3902068 Number of extensions: 1888690 Number of successful extensions: 123245 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123156 Number of HSP's gapped (non-prelim): 89 length of query: 202 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 180 effective length of database: 17,147,199,772 effective search space: 3086495958960 effective search space used: 3086495958960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)