>SMC4_HUMAN (Q9NTJ3) Structural maintenance of chromosomes 4-like 1 protein|
           (Chromosome-associated polypeptide C) (hCAP-C) (XCAP-C
           homolog)
          Length = 1288

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = -3

Query: 595 AEEEIRRRSMQASLRAAMPQPPEN-TADGSVPRQVPRMTVDVNFSEFAGESDAG 437
           A EE+  RS++  L +  P PP   T +   PR +    V+ NF  +AGE   G
Sbjct: 49  ASEELDNRSLEEILNSIPPPPPPAMTNEAGAPRLMITHIVNQNFKSYAGEKILG 102

>YFF4_YEAST (P43549) Hypothetical 70.5 kDa protein in AGP3-DAK3 intergenic|
           region
          Length = 646

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = -3

Query: 541 PQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPSTASFAR 362
           PQ P NT   +V R+  R + +VNFS    ES A S      R L ++ ++  ST  + +
Sbjct: 244 PQKPSNTHIENVSRKKKRTSHNVNFS-LGDESYASSIADAESRKLKNMQTLDGSTPVYTK 302

Query: 361 SP 356
            P
Sbjct: 303 LP 304

>SMC4_MOUSE (Q8CG47) Structural maintenance of chromosomes 4-like 1 protein|
           (Chromosome-associated polypeptide C) (XCAP-C homolog)
          Length = 1286

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 589 EEIRRRSMQASLRAAMPQPPENTA-DGSVPRQVPRMTVDVNFSEFAGESDAG 437
           EE+  RS++  L +  P PP   A +   PR +    V+ NF  +AGE   G
Sbjct: 49  EELDNRSLEEILNSIPPPPPPAMASEAGAPRLMITHIVNQNFKSYAGEKVLG 100

>ACM4_HUMAN (P08173) Muscarinic acetylcholine receptor M4|
          Length = 479

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = -3

Query: 595 AEEEIRRRSMQASLRAAMPQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGS-NQGTP 419
           A EE+R   ++ +   A+P PP   AD                 + + ES +GS  Q T 
Sbjct: 263 AREELRNGKLEEAPPPALPPPPRPVAD----------------KDTSNESSSGSATQNTK 306

Query: 418 GRPLHHVHSISPSTASFARSPFGSRNHNPGN 326
            RP   + +   +T +    P   R  NP +
Sbjct: 307 ERPATELSTTEATTPAMPAPPLQPRALNPAS 337

>FBX42_MOUSE (Q6PDJ6) F-box only protein 42|
          Length = 717

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 30/109 (27%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
 Frame = -3

Query: 523 TADGSVPRQVPRMTVDVNFSEFAGESDAGS-NQGTPGRPLHHVHSIS---PSTASFARSP 356
           T  GSV R  P  T  V+       + AG+ + G   R L  + ++S   PS ++    P
Sbjct: 522 TVAGSV-RHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAMSSKGPSASAALSPP 580

Query: 355 FGSRNHNPGNXXXXXXXXXXXXXXXXXAGTGHQ--------GHHPSASL 233
            GS   +PG+                  G GH         GHHP  SL
Sbjct: 581 LGSSPSSPGSQSLSSGETVPNSRPGPAQGDGHSLPPIARRLGHHPPQSL 629

>MUTA_STRCM (Q05064) Methylmalonyl-CoA mutase small subunit (EC 5.4.99.2)|
           (MCM-beta)
          Length = 616

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = -3

Query: 520 ADGSVPRQVPRMTVDVNFSEFAGESDAGSNQGTPGRPLHHVHSISPSTASFARSPFGS 347
           A  + P  +PR+  D  + E  G SDA   + T  RP   + ++ P+ A  AR+ F +
Sbjct: 463 APAAPPGGLPRVRRDEAYEELRGRSDA-HLEATGARPKVFIAALGPAAAHTARATFAA 519

>SLU7_EMENI (Q5B3U2) Pre-mRNA-splicing factor slu7 (Splicing factor sluA)|
          Length = 466

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/68 (30%), Positives = 27/68 (39%)
 Frame = -3

Query: 610 KQILNAEEEIRRRSMQASLRAAMPQPPENTADGSVPRQVPRMTVDVNFSEFAGESDAGSN 431
           +Q++   EE+ R   QA L     Q   +  D   P Q  R         +A ESD G  
Sbjct: 130 RQVVEEYEELERLKRQAKLTKGETQTTNDGLDDEAPEQEAR---------YAEESDMGRQ 180

Query: 430 QGTPGRPL 407
           Q T  R L
Sbjct: 181 QSTATRNL 188

>SMC4_MICAR (Q9ERA5) Structural maintenance of chromosomes 4-like 1 protein|
           (Chromosome-associated polypeptide C) (XCAP-C homolog)
           (Fragment)
          Length = 1243

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -3

Query: 589 EEIRRRSMQASLRAAMPQPPENTA-DGSVPRQVPRMTVDVNFSEFAGESDAG 437
           EE+  RS++  L +  P PP   A +   PR +    V+ NF   AGE   G
Sbjct: 6   EEVDNRSLEEILSSIPPPPPPAMASEAGAPRLMITHIVNQNFKSCAGEKILG 57

>KCNG4_HUMAN (Q8TDN1) Potassium voltage-gated channel subfamily G member 4|
           (Voltage-gated potassium channel subunit Kv6.4)
          Length = 519

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 12/63 (19%)
 Frame = +3

Query: 492 GTCLGTLPSAVFSGG*GMAARSEACMLRLLISSSAFKICFSI------------CTRSCF 635
           G C+  L   V +   G+  +  AC+  L ++++A  +C S             C+R C+
Sbjct: 201 GLCMNRLREMVENPQSGLPGKVFACLSILFVATTAVSLCVSTMPDLRAEEDQGECSRKCY 260

Query: 636 FLF 644
           ++F
Sbjct: 261 YIF 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,331,574
Number of Sequences: 219361
Number of extensions: 1878990
Number of successful extensions: 5332
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5325
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)