ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39c08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5258_ARATH (Q9FK81) Protein At5g22580 101 2e-21
2POP3_ARATH (Q9LUV2) Putative Pop3 protein 74 4e-13
3CSBB_BACSU (Q45539) Putative glycosyl transferase csbB (EC 2.-.-.-) 32 1.7

>Y5258_ARATH (Q9FK81) Protein At5g22580|
          Length = 111

 Score =  101 bits (251), Expect = 2e-21
 Identities = 47/99 (47%), Positives = 65/99 (65%)
 Frame = -2

Query: 604 FKHLCLVRFKEGVVVDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFTHVFSMSFA 425
           FKHL +V+FKE   VD+I++ L  L +++DTVK F WG+D  + + L QGFTH FSM+F 
Sbjct: 6   FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65

Query: 424 SAEDLAACMGHEKHSAFAATFMAVLDKVVVLDFPFVVAK 308
           + +   A   H  H  F+A F AV+DK+V+LDFP    K
Sbjct: 66  NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVK 104



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>POP3_ARATH (Q9LUV2) Putative Pop3 protein|
          Length = 109

 Score = 73.9 bits (180), Expect = 4e-13
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)
 Frame = -2

Query: 601 KHLCLVRFKEGVV---VDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFTHVFSMS 431
           KH+ L  FK+GV    ++++I+    L   ++ +K F WGKDV + E L QG+TH+F  +
Sbjct: 9   KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDV-SIENLHQGYTHIFEST 67

Query: 430 FASAEDLAACMGHEKHSAFAATFMAVLDKVVVLDF 326
           F S E +A  + H  H  FA  F+  LDKV+V+D+
Sbjct: 68  FESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDY 102



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>CSBB_BACSU (Q45539) Putative glycosyl transferase csbB (EC 2.-.-.-)|
          Length = 329

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 562 VDDIIQQLTKLAAELDTVKFFGWGKDVLNQETLTQGFTHV 443
           VDD +QQ+  LAA    VK+  + ++   +  +  GF HV
Sbjct: 47  VDDTLQQIKDLAATCSRVKYISFSRNFGKEAAILAGFEHV 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,190,760
Number of Sequences: 219361
Number of extensions: 1299491
Number of successful extensions: 3351
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3349
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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