ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags39c05 |
|---|---|
| Clone Library Name | barley_pub |
>SCN8A_MOUSE (Q9WTU3) Sodium channel protein type 8 alpha subunit (Sodium| channel protein type VIII alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.6) Length = 1978 Score = 32.7 bits (73), Expect = 1.1 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%) Frame = -3 Query: 507 AVPVHDF-----------LLSLGRTMFRLCREGR**IASSL*LFRKLGVLFTQLSLKGSV 361 AVP+ DF +L+ G+T+FR I S L R++ + S+ + Sbjct: 78 AVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNLIRRIAIKILIHSVFSMI 137 Query: 360 AIVDLLLNICLFRDFNRYYIWSKMNESTF 274 + +L N C+F F+ WSK E TF Sbjct: 138 IMCTILTN-CVFMTFSNPPEWSKNVEYTF 165
>SCN8A_HUMAN (Q9UQD0) Sodium channel protein type 8 alpha subunit (Sodium| channel protein type VIII alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.6) Length = 1980 Score = 32.7 bits (73), Expect = 1.1 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 11/89 (12%) Frame = -3 Query: 507 AVPVHDF-----------LLSLGRTMFRLCREGR**IASSL*LFRKLGVLFTQLSLKGSV 361 AVP+ DF +L+ G+T+FR I S L R++ + S+ + Sbjct: 78 AVPLEDFDPYYLTQKTFVVLNRGKTLFRFSATPALYILSPFNLIRRIAIKILIHSVFSMI 137 Query: 360 AIVDLLLNICLFRDFNRYYIWSKMNESTF 274 + +L N C+F F+ WSK E TF Sbjct: 138 IMCTILTN-CVFMTFSNPPDWSKNVEYTF 165
>WASF2_MOUSE (Q8BH43) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) Length = 497 Score = 32.0 bits (71), Expect = 1.8 Identities = 23/58 (39%), Positives = 28/58 (48%) Frame = -2 Query: 667 SDKAGTLSPAIQEDNGMSVLPTPNEVFALPAPEQYRGSNSSRMKRCPLNGSSLGSPRP 494 SD A + SP+ EDN LP P F+ PA Q RGS + KR + S P P Sbjct: 252 SDSASSPSPSFSEDN----LPPPPAEFSYPADNQ-RGSVLAGPKRTSMVSPSHPPPAP 304
>PAND_XANCP (Q8P9S8) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 126 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 396 VLFTQLSLKGSVAIVDLLLNICLFRDFNRYYIWSKMNESTF 274 V ++L+ +GS+AI LLL R+F + +IW N + F Sbjct: 15 VTHSELNYEGSIAIDGLLLEATGIREFEQVHIWDVTNGARF 55
>PAND_XANAC (Q8PLK9) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 126 Score = 31.6 bits (70), Expect = 2.4 Identities = 15/41 (36%), Positives = 24/41 (58%) Frame = -3 Query: 396 VLFTQLSLKGSVAIVDLLLNICLFRDFNRYYIWSKMNESTF 274 V ++L+ +GS+AI LLL R+F + +IW N + F Sbjct: 15 VTHSELNYEGSIAIDGLLLEATGIREFEQVHIWDVTNGARF 55
>WASF4_HUMAN (Q8IV90) Wiskott-Aldrich syndrome protein family member 4| (WASP-family protein member 4) Length = 625 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/58 (37%), Positives = 27/58 (46%) Frame = -2 Query: 667 SDKAGTLSPAIQEDNGMSVLPTPNEVFALPAPEQYRGSNSSRMKRCPLNGSSLGSPRP 494 SD A + SP+ EDN LP P F+ P Q RGS + KR + S P P Sbjct: 380 SDSASSPSPSFSEDN----LPPPPAEFSYPVDNQ-RGSGLAGPKRSSVVSPSHPPPAP 432
>WASF2_HUMAN (Q9Y6W5) Wiskott-Aldrich syndrome protein family member 2| (WASP-family protein member 2) (WAVE-2 protein) (Verprolin homology domain-containing protein 2) Length = 498 Score = 31.2 bits (69), Expect = 3.1 Identities = 22/58 (37%), Positives = 27/58 (46%) Frame = -2 Query: 667 SDKAGTLSPAIQEDNGMSVLPTPNEVFALPAPEQYRGSNSSRMKRCPLNGSSLGSPRP 494 SD A + SP+ EDN LP P F+ P Q RGS + KR + S P P Sbjct: 252 SDSASSPSPSFSEDN----LPPPPAEFSYPVDNQ-RGSGLAGPKRSSVVSPSHPPPAP 304
>YVAD_BACSU (O32226) Hypothetical protein yvaD| Length = 133 Score = 31.2 bits (69), Expect = 3.1 Identities = 9/40 (22%), Positives = 20/40 (50%) Frame = -3 Query: 258 YIRMWYLLESVKIFIFWNGRSILLFPSAWMGNHKKHNFCL 139 Y+++++L+ + ++W L P +W H H F + Sbjct: 3 YMKLFFLVTDIGFILYWLSAGFSLIPESWAFKHHDHPFMI 42
>PAND_XANOR (Q5H0A6) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 126 Score = 31.2 bits (69), Expect = 3.1 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 396 VLFTQLSLKGSVAIVDLLLNICLFRDFNRYYIWSKMNESTF 274 V +L+ +GS+AI LLL R+F + +IW N + F Sbjct: 15 VTHAELNYEGSIAIDGLLLEATGIREFEQVHIWDVTNGARF 55
>CCDC9_MOUSE (Q8VC31) Coiled-coil domain-containing protein 9| Length = 543 Score = 30.8 bits (68), Expect = 4.1 Identities = 15/38 (39%), Positives = 18/38 (47%) Frame = +1 Query: 442 PFSAKPEHSSA*TQEEIMDGDCPGTNHSKGTSSSSRNW 555 PFS +H E M+ + PGT H GT SS W Sbjct: 501 PFSPSEDHQPVSDWGEEMELNSPGTAHLPGTHSSGEAW 538
>LIPA_BUCAI (P57357) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 323 Score = 30.8 bits (68), Expect = 4.1 Identities = 14/52 (26%), Positives = 28/52 (53%) Frame = +3 Query: 522 FKGHLFILEELEPRYCSGAGRANTSLGVGSTDIPLSSWMAGLSVPALSLLSM 677 ++ L +LE + +YCS ++ LG+G D+ + M L ++LL++ Sbjct: 207 YQRSLLLLESFKKKYCSVLTKSGLMLGLGEKDVEIIQVMKDLYSSGVTLLTV 258
>EFP_BUCMP (O51834) Elongation factor P (EF-P) (Fragment)| Length = 187 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 6/56 (10%) Frame = -3 Query: 318 FNRYYIWSKMNESTF*NMSIYIRM------WYLLESVKIFIFWNGRSILLFPSAWM 169 +N + W +N +TF +S+ ++ W L + I WN + IL+ P+ ++ Sbjct: 76 YNDGFFWYFINNNTFEELSVEKKIIGIQKKWLLEQDTCIVTLWNNKPILVTPNTFV 131
>FOXP4_HUMAN (Q8IVH2) Forkhead box protein P4 (Fork head-related protein-like A)| Length = 680 Score = 29.6 bits (65), Expect = 9.1 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 13/78 (16%) Frame = -2 Query: 688 PRLN---MLNSDKAGTLSPAIQEDNGMSVLPTPNEVFALP---APEQYRGSNSSRMKRCP 527 P LN MLN A +L P +D G V P P+ + P +P QY S+ ++K P Sbjct: 584 PLLNSPGMLNPGSASSLLPLSHDDVGAPVEPLPSNGSSSPPRLSPPQY--SHQVQVKEEP 641 Query: 526 LN-------GSSLGSPRP 494 G LG+P P Sbjct: 642 AEAEEDRQPGPPLGAPNP 659
>PAND_XYLFT (Q87EV8) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 126 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -3 Query: 396 VLFTQLSLKGSVAIVDLLLNICLFRDFNRYYIWSKMNESTF 274 V ++L+ +GS+AI LLL +F + +IW+ N + F Sbjct: 15 VSHSELNYEGSIAIDGLLLEAAGLYEFEKVHIWNVTNGARF 55
>PAND_XYLFA (Q9PGR7) Aspartate 1-decarboxylase precursor (EC 4.1.1.11)| (Aspartate alpha-decarboxylase) [Contains: Aspartate 1-decarboxylase beta chain; Aspartate 1-decarboxylase alpha chain] Length = 126 Score = 29.6 bits (65), Expect = 9.1 Identities = 14/41 (34%), Positives = 24/41 (58%) Frame = -3 Query: 396 VLFTQLSLKGSVAIVDLLLNICLFRDFNRYYIWSKMNESTF 274 V ++L+ +GS+AI LLL +F + +IW+ N + F Sbjct: 15 VSHSELNYEGSIAIDGLLLEAAGLYEFEKVHIWNVTNGARF 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,524,536 Number of Sequences: 219361 Number of extensions: 2271378 Number of successful extensions: 5642 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5413 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5636 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
