ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38m22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_640599.1| Dictyostelium discoideum hypothetical protein (... 42 2.2
2ref|XM_640597.1| Dictyostelium discoideum hypothetical protein (... 42 2.2
3gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001... 42 2.2
4gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B5701... 42 2.2
5gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/... 42 2.2
6gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B1501... 42 2.2
7gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B1402... 42 2.2
8gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/... 42 2.2
9gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B1402... 42 2.2
10emb|BX248310.3| Human DNA sequence from clone DASS-311G1 on chro... 42 2.2
11emb|AL845443.3| Human DNA sequence from clone DAQB-48K1 on chrom... 42 2.2
12emb|CR759828.5| Human DNA sequence from clone DAMC-153L10 on chr... 42 2.2
13gb|AC115097.6| Homo sapiens chromosome 11, clone CTD-2532J14, co... 42 2.2
14emb|BX294106.10| Zebrafish DNA sequence from clone DKEY-211F4 in... 42 2.2
15emb|CR759814.6| Human DNA sequence from clone DADB-15N24 on chro... 42 2.2
16emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in... 42 2.2
17gb|AF465310.1| Dictyostelium discoideum ABC transporter ABCA.8 (... 42 2.2
18gb|AF465309.1| Dictyostelium discoideum ABC transporter ABCA.7 (... 42 2.2
19gb|AC024293.18| Homo sapiens chromosome 11, clone RP11-425L10, c... 42 2.2
20dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
21gb|AC004204.1|AC004204 Homo sapiens clone UWGC:y3c018 from 6p21,... 42 2.2
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.2
23emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.2
24ref|XM_479487.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.9
25gb|BC067000.1| Mus musculus gene model 1008, (NCBI), mRNA (cDNA ... 40 8.9
26ref|NM_001005425.1| Mus musculus gene model 1008, (NCBI) (Gm1008... 40 8.9
27gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, ... 40 8.9
28gb|AY816086.1| Schistosoma japonicum SJCHGC02063 protein mRNA, c... 40 8.9
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 8.9
30gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.9
31gb|AC134998.2| Homo sapiens 3 BAC RP11-437K21 (Roswell Park Canc... 40 8.9
32emb|Z54218.1|CEF37B12 Caenorhabditis elegans Cosmid F37B12, comp... 40 8.9
33ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-bind... 40 8.9
34emb|AL356863.12| Human DNA sequence from clone RP11-131P10 on ch... 40 8.9
35emb|AL354707.17| Human DNA sequence from clone RP11-390F4 on chr... 40 8.9
36emb|AL591064.11| Mouse DNA sequence from clone RP23-395E18 on ch... 40 8.9
37emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chro... 40 8.9
38gb|BC099085.1| Rattus norvegicus cDNA clone IMAGE:7453114 40 8.9
39gb|AC011061.13| Homo sapiens chromosome 17, clone RP11-12H18, co... 40 8.9
40gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 8.9
41gb|AC016178.9| Homo sapiens chromosome 8, clone RP11-259L23, com... 40 8.9
42ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical pro... 40 8.9
43dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
45gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, comple... 40 8.9
46gb|AC005037.2| Homo sapiens BAC clone RP11-469M7 from 2, complet... 40 8.9
47dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
48dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
49dbj|AB117995.1| Oryza sativa (japonica cultivar-group) bip108 mR... 40 8.9
50dbj|AK121502.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
51ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 ... 40 8.9
52emb|CR381621.4| Zebrafish DNA sequence from clone DKEY-101C24 in... 40 8.9
53dbj|AK059599.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
54dbj|AK058737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
55dbj|AK058245.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.9
56gb|AY109735.1| Zea mays CL22688_1 mRNA sequence 40 8.9
57gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 8.9
58dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 8.9
59emb|AL672231.7| Mouse DNA sequence from clone RP23-54C14 on chro... 40 8.9 
>ref|XM_640599.1| Dictyostelium discoideum hypothetical protein (DDB0202818), partial
           mRNA
          Length = 210

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 160 ttttattttacttattattac 180
           |||||||||||||||||||||
Sbjct: 18  ttttattttacttattattac 38
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>ref|XM_640597.1| Dictyostelium discoideum hypothetical protein (DDB0202820), partial
           mRNA
          Length = 2028

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 160 ttttattttacttattattac 180
           |||||||||||||||||||||
Sbjct: 18  ttttattttacttattattac 38
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>gb|DQ249182.1| Homo sapiens isolate 541CLS41 haplotype HLA-B5001/HLA-Cw0602 genomic
             sequence
          Length = 346809

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 96129 cttctcctccgtggtctggaa 96149
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>gb|DQ249180.1| Homo sapiens isolate 495CLS44 haplotype HLA-B570101/HLA-Cw0602 genomic
             sequence
          Length = 265420

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 99288 cttctcctccgtggtctggaa 99308
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>gb|DQ249179.1| Homo sapiens isolate 495CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
             sequence
          Length = 338517

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 95312 cttctcctccgtggtctggaa 95332
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>gb|DQ249177.1| Homo sapiens isolate 218CLS60 haplotype HLA-B15010101/HLA-Cw030401
              genomic sequence
          Length = 351341

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    cttctcctccgtggtctggaa 261
              |||||||||||||||||||||
Sbjct: 110921 cttctcctccgtggtctggaa 110941
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>gb|DQ249176.1| Homo sapiens isolate 218CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
              sequence
          Length = 363675

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 241    cttctcctccgtggtctggaa 261
              |||||||||||||||||||||
Sbjct: 110846 cttctcctccgtggtctggaa 110866
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>gb|DQ249175.1| Homo sapiens isolate 144CLS7 haplotype HLA-B3801/HLA-Cw120301 genomic
             sequence
          Length = 328871

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 96295 cttctcctccgtggtctggaa 96315
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>gb|DQ249173.1| Homo sapiens isolate 135CLS51 haplotype HLA-B140201/HLA-Cw0802 genomic
             sequence
          Length = 336776

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 89950 cttctcctccgtggtctggaa 89970
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>emb|BX248310.3| Human DNA sequence from clone DASS-311G1 on chromosome 6, complete
             sequence
          Length = 116320

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 18173 cttctcctccgtggtctggaa 18153
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>emb|AL845443.3| Human DNA sequence from clone DAQB-48K1 on chromosome 6 Contains the
            USP8P pseudogene for ubiquitin specific protease 8, the
            RPL3P2 pseudogene for ribosomal protein L3 pseudogene 2,
            the WASF5P pseudogene for WAS protein family, member 5,
            the HLA-B gene for major histocompatibility complex,
            class I, B, the DHFRP2 pseudogene for dihydrofolate
            reductase 2, the FGFR3P pseudogene for fibroblast growth
            factor receptor 3, the HLA-S gene for major
            histocompatibility complex, class I, S, the MICA gene for
            MHC class I polypeptide-related sequence A and 3 CpG
            islands, complete sequence
          Length = 148076

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cttctcctccgtggtctggaa 261
            |||||||||||||||||||||
Sbjct: 9600 cttctcctccgtggtctggaa 9580
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>emb|CR759828.5| Human DNA sequence from clone DAMC-153L10 on chromosome 6, complete
             sequence
          Length = 102821

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 20109 cttctcctccgtggtctggaa 20089
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>gb|AC115097.6| Homo sapiens chromosome 11, clone CTD-2532J14, complete sequence
          Length = 132923

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  gttttattttacttattatta 179
            |||||||||||||||||||||
Sbjct: 9482 gttttattttacttattatta 9462
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>emb|BX294106.10| Zebrafish DNA sequence from clone DKEY-211F4 in linkage group 5, complete
              sequence
          Length = 190191

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    gttttattttacttattatta 179
              |||||||||||||||||||||
Sbjct: 152780 gttttattttacttattatta 152760
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>emb|CR759814.6| Human DNA sequence from clone DADB-15N24 on chromosome 6, complete
            sequence
          Length = 63499

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 241  cttctcctccgtggtctggaa 261
            |||||||||||||||||||||
Sbjct: 2029 cttctcctccgtggtctggaa 2009
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>emb|CR293514.9| Zebrafish DNA sequence from clone CH211-153C2 in linkage group 22,
             complete sequence
          Length = 185892

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   ttttattttacttattattac 180
             |||||||||||||||||||||
Sbjct: 12788 ttttattttacttattattac 12808
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>gb|AF465310.1| Dictyostelium discoideum ABC transporter ABCA.8 (abca8) gene,
            complete cds
          Length = 4230

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 160  ttttattttacttattattac 180
            |||||||||||||||||||||
Sbjct: 3963 ttttattttacttattattac 3983
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>gb|AF465309.1| Dictyostelium discoideum ABC transporter ABCA.7 (abca7) gene,
           complete cds
          Length = 9751

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 160 ttttattttacttattattac 180
           |||||||||||||||||||||
Sbjct: 268 ttttattttacttattattac 248
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>gb|AC024293.18| Homo sapiens chromosome 11, clone RP11-425L10, complete sequence
          Length = 70106

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 159   gttttattttacttattatta 179
             |||||||||||||||||||||
Sbjct: 57617 gttttattttacttattatta 57597
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 159     gttttattttacttattatta 179
               |||||||||||||||||||||
Sbjct: 8697794 gttttattttacttattatta 8697814
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>gb|AC004204.1|AC004204 Homo sapiens clone UWGC:y3c018 from 6p21, complete sequence
          Length = 46797

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 241   cttctcctccgtggtctggaa 261
             |||||||||||||||||||||
Sbjct: 20416 cttctcctccgtggtctggaa 20436
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 159     gttttattttacttattatta 179
               |||||||||||||||||||||
Sbjct: 8697677 gttttattttacttattatta 8697697
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>emb|AL928776.4|CNS08CC6 Oryza sativa chromosome 12, . BAC OSJNBa0036A15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 195500

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 159    gttttattttacttattatta 179
              |||||||||||||||||||||
Sbjct: 144375 gttttattttacttattatta 144355
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>ref|XM_479487.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 691

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 tgacggtgaccttggtcttg 418
           ||||||||||||||||||||
Sbjct: 303 tgacggtgaccttggtcttg 284
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>gb|BC067000.1| Mus musculus gene model 1008, (NCBI), mRNA (cDNA clone MGC:86131
            IMAGE:5705933), complete cds
          Length = 3337

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttttattttacttattatta 179
            ||||||||||||||||||||
Sbjct: 3133 ttttattttacttattatta 3114
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>ref|NM_001005425.1| Mus musculus gene model 1008, (NCBI) (Gm1008), mRNA
          Length = 3337

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  ttttattttacttattatta 179
            ||||||||||||||||||||
Sbjct: 3133 ttttattttacttattatta 3114
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>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 157     tcgttttattttacttatta 176
               ||||||||||||||||||||
Sbjct: 3803314 tcgttttattttacttatta 3803333
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>gb|AY816086.1| Schistosoma japonicum SJCHGC02063 protein mRNA, complete cds
          Length = 2112

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 160  ttttattttacttattattacgtc 183
            |||||||||| |||||||||||||
Sbjct: 1628 ttttattttatttattattacgtc 1651
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 399      tgacggtgaccttggtcttg 418
                ||||||||||||||||||||
Sbjct: 12773901 tgacggtgaccttggtcttg 12773920
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>gb|AC148339.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone B1339A06,
             complete sequence
          Length = 132243

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 399   tgacggtgaccttggtcttg 418
             ||||||||||||||||||||
Sbjct: 12117 tgacggtgaccttggtcttg 12136
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>gb|AC134998.2| Homo sapiens 3 BAC RP11-437K21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 127922

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   ttttattttacttattatta 179
             ||||||||||||||||||||
Sbjct: 85035 ttttattttacttattatta 85054
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>emb|Z54218.1|CEF37B12 Caenorhabditis elegans Cosmid F37B12, complete sequence
          Length = 33950

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ttttattttacttattatta 179
             ||||||||||||||||||||
Sbjct: 15216 ttttattttacttattatta 15197
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>ref|XM_660787.1| Cryptosporidium hominis TU502 Myb-like DNA-binding domain
            (Chro.80556) partial mRNA
          Length = 5922

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 264  tgaagttgtagctgttgatg 283
            ||||||||||||||||||||
Sbjct: 5519 tgaagttgtagctgttgatg 5500
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>emb|AL356863.12| Human DNA sequence from clone RP11-131P10 on chromosome 13 Contains a
              novel gene (BM-002), complete sequence
          Length = 122752

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttttattttacttattatta 179
              ||||||||||||||||||||
Sbjct: 102542 ttttattttacttattatta 102523
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>emb|AL354707.17| Human DNA sequence from clone RP11-390F4 on chromosome 9 Contains the
             5' end of a ring finger protein 2 (RNF2) pseudogene, the
             3' end of a novel gene, a 60S ribosomal protein L35a
             (RPL35A) pseudogene, three novel genes, a gene similar to
             small nuclear ribonucleoprotein polypeptide E (SNRPE), the
             5' end of the JMJD2C gene for jumonji domain containing
             2C, a chromosome 20 open reading frame 45 (C20orf45)
             pseudogene and six CpG islands, complete sequence
          Length = 170970

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   ttttattttacttattatta 179
             ||||||||||||||||||||
Sbjct: 19163 ttttattttacttattatta 19182
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>emb|AL591064.11| Mouse DNA sequence from clone RP23-395E18 on chromosome 2, complete
           sequence
          Length = 200078

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 160 ttttattttacttattatta 179
           ||||||||||||||||||||
Sbjct: 204 ttttattttacttattatta 223
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>emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chromosome 2 Contains the 5'
              end of the Cdh22 gene for cadherin 22, the Ovcov1 gene for
              ovarian cancer overexpressed 1, the Elmo2 gene for
              engulfment and cell motility 2, ced-12 homolog (C.
              elegans), the 3' end of a putative novel zinc finger
              protein and three CpG islands, complete sequence
          Length = 144243

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ttttattttacttattatta 179
              ||||||||||||||||||||
Sbjct: 142447 ttttattttacttattatta 142466
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>gb|BC099085.1| Rattus norvegicus cDNA clone IMAGE:7453114
          Length = 4168

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   ggccagatacaagctgttcg 109
            ||||||||||||||||||||
Sbjct: 1163 ggccagatacaagctgttcg 1144
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>gb|AC011061.13| Homo sapiens chromosome 17, clone RP11-12H18, complete sequence
          Length = 165643

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ttttattttacttattatta 179
              ||||||||||||||||||||
Sbjct: 103681 ttttattttacttattatta 103700
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 388     cgcgatgaggctgacggtgacctt 411
               |||||||| |||||||||||||||
Sbjct: 2074270 cgcgatgacgctgacggtgacctt 2074293
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>gb|AC016178.9| Homo sapiens chromosome 8, clone RP11-259L23, complete sequence
          Length = 171035

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   ttttattttacttattatta 179
             ||||||||||||||||||||
Sbjct: 40132 ttttattttacttattatta 40151
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>ref|XM_627368.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd8_4840),
            partial mRNA
          Length = 7230

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 263  ttgaagttgtagctgttgat 282
            ||||||||||||||||||||
Sbjct: 6798 ttgaagttgtagctgttgat 6779
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 399      tgacggtgaccttggtcttg 418
                ||||||||||||||||||||
Sbjct: 28447641 tgacggtgaccttggtcttg 28447622
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 399      tgacggtgaccttggtcttg 418
                ||||||||||||||||||||
Sbjct: 12770664 tgacggtgaccttggtcttg 12770683
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>gb|AC017040.7| Homo sapiens BAC clone RP11-319B20 from 2, complete sequence
          Length = 178446

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   ttttattttacttattatta 179
             ||||||||||||||||||||
Sbjct: 65187 ttttattttacttattatta 65168
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>gb|AC005037.2| Homo sapiens BAC clone RP11-469M7 from 2, complete sequence
          Length = 190508

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 160    ttttattttacttattatta 179
              ||||||||||||||||||||
Sbjct: 168132 ttttattttacttattatta 168113
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>dbj|AP006268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0037D09
          Length = 140470

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 399   tgacggtgaccttggtcttg 418
             ||||||||||||||||||||
Sbjct: 13393 tgacggtgaccttggtcttg 13374
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>dbj|AP004343.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
            clone:P0618H09
          Length = 142306

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 399  tgacggtgaccttggtcttg 418
            ||||||||||||||||||||
Sbjct: 5182 tgacggtgaccttggtcttg 5163
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>dbj|AB117995.1| Oryza sativa (japonica cultivar-group) bip108 mRNA for BRI1-KD
           interacting protein 108, complete cds
          Length = 669

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 tgacggtgaccttggtcttg 418
           ||||||||||||||||||||
Sbjct: 299 tgacggtgaccttggtcttg 280
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>dbj|AK121502.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033022G11, full
           insert sequence
          Length = 675

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 tgacggtgaccttggtcttg 418
           ||||||||||||||||||||
Sbjct: 282 tgacggtgaccttggtcttg 263
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>ref|XM_309208.2| Anopheles gambiae str. PEST ENSANGP00000005397 (ENSANGG00000004156),
            partial mRNA
          Length = 7809

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 267  agttgtagctgttgatgccg 286
            ||||||||||||||||||||
Sbjct: 2962 agttgtagctgttgatgccg 2943
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>emb|CR381621.4| Zebrafish DNA sequence from clone DKEY-101C24 in linkage group 20,
             complete sequence
          Length = 199635

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   gtagagactagagagtacac 141
             ||||||||||||||||||||
Sbjct: 20934 gtagagactagagagtacac 20953
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>dbj|AK059599.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-E04, full
           insert sequence
          Length = 791

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 tgacggtgaccttggtcttg 418
           ||||||||||||||||||||
Sbjct: 303 tgacggtgaccttggtcttg 284
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>dbj|AK058737.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-G04, full
           insert sequence
          Length = 612

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 tgacggtgaccttggtcttg 418
           ||||||||||||||||||||
Sbjct: 281 tgacggtgaccttggtcttg 262
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>dbj|AK058245.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-A06, full
           insert sequence
          Length = 691

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 399 tgacggtgaccttggtcttg 418
           ||||||||||||||||||||
Sbjct: 303 tgacggtgaccttggtcttg 284
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>gb|AY109735.1| Zea mays CL22688_1 mRNA sequence
          Length = 960

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 459 tcttctccatggtctcgccc 478
           ||||||||||||||||||||
Sbjct: 737 tcttctccatggtctcgccc 718
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 29     aataactaaatctgcggcat 48
              ||||||||||||||||||||
Sbjct: 207329 aataactaaatctgcggcat 207310
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>dbj|AP001107.5| Homo sapiens genomic DNA, chromosome 11q clone:RP11-867G23, complete
              sequences
          Length = 196662

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 160    ttttattttacttattatta 179
              ||||||||||||||||||||
Sbjct: 114882 ttttattttacttattatta 114901
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>emb|AL672231.7| Mouse DNA sequence from clone RP23-54C14 on chromosome X, complete
             sequence
          Length = 109110

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   tcccaggtgctcatctccga 612
             ||||||||||||||||||||
Sbjct: 51639 tcccaggtgctcatctccga 51658


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,108,872
Number of Sequences: 3902068
Number of extensions: 4108872
Number of successful extensions: 83328
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83002
Number of HSP's gapped (non-prelim): 326
length of query: 650
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 627
effective length of database: 17,143,297,704
effective search space: 10748847660408
effective search space used: 10748847660408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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