ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38m18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y173_UREPA (Q9PQX0) Hypothetical protein UU173 32 2.1
2EFG_STRT2 (Q5M2M6) Elongation factor G (EF-G) 30 8.0
3EFG_STRT1 (Q5LY21) Elongation factor G (EF-G) 30 8.0

>Y173_UREPA (Q9PQX0) Hypothetical protein UU173|
          Length = 690

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 115 VIS*LSTYTTDLFQIIIQHNFPPTYINARHMYRDKHDMNDNDYWL 249
           VIS L  +  +L  + I+   P  +I +   Y DK D  DND+WL
Sbjct: 347 VISELLVHKQNLLALPIEQRIPNYFIPS---YNDKGDYKDNDFWL 388



to top

>EFG_STRT2 (Q5M2M6) Elongation factor G (EF-G)|
          Length = 693

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 136 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 273
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEI 235



to top

>EFG_STRT1 (Q5LY21) Elongation factor G (EF-G)|
          Length = 693

 Score = 30.0 bits (66), Expect = 8.0
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
 Frame = +1

Query: 136 YTTDLFQIIIQHNFPPTYINARHMYRDK----HDMNDNDYWLTYLSSKEI 273
           YT DL   I++ + P  Y++  + YR+K        D D  + YL  +EI
Sbjct: 186 YTNDLGTDILEEDIPAEYVDQANEYREKLIEAVAETDEDLMMKYLEGEEI 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,440,034
Number of Sequences: 219361
Number of extensions: 2234857
Number of successful extensions: 4305
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7932903580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top