ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39b15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_469333.1| Oryza sativa (japonica cultivar-group), mRNA 400 e-108
2dbj|AK059852.1| Oryza sativa (japonica cultivar-group) cDNA clon... 400 e-108
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 317 2e-83
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 317 2e-83
5gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E... 317 2e-83
6emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segmen... 52 0.002
7gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, co... 44 0.55
8gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 m... 44 0.55
9gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Canc... 40 8.6
10ref|XM_762859.1| Giardia lamblia ATCC 50803 axoneme-associated p... 40 8.6
11gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 8.6
12gb|AC164010.2| Mus musculus chromosome 18, clone RP24-391C15, co... 40 8.6
13gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, c... 40 8.6
14gb|AC012502.3|AC012502 Homo sapiens BAC clone RP11-461H6 from Y,... 40 8.6
15dbj|BS000015.1| Pan troglodytes chromosome 22 clone:PTB-017F24, ... 40 8.6
16gb|AC122566.14| Mus musculus chromosome 5, clone RP24-259O11, co... 40 8.6
17gb|AF222685.1|AF222685 Homo sapiens chromosome 21 PAC 103K19 map... 40 8.6
18emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 40 8.6
19emb|CT009540.10| M.truncatula DNA sequence from clone MTH2-39B3 ... 40 8.6
20gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone... 40 8.6

>ref|XM_469333.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1018

 Score =  400 bits (202), Expect = e-108
 Identities = 521/625 (83%), Gaps = 2/625 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   ttgtaacataaataa-aagntacccccagcaacagtaaacattcagagattcaaaaatac 63
           ||||||||||||||| ||| |||| || ||||| | ||||||| |||||||||||  |||
Sbjct: 960 ttgtaacataaataagaagataccacctgcaactg-aaacattaagagattcaaatgtac 902

                                                                       
Query: 64  cttccataggaatgcttacaagatcacaagcttggacggtctcttcagagaggccattgc 123
           ||| |||||||||| ||||||| ||||| ||||| | ||| ||| | || ||||||||||
Sbjct: 901 cttgcataggaatgtttacaagctcacaggcttgaagggtatctgccgaaaggccattgc 842

                                                                       
Query: 124 cctcacttcctaacactaagcacagtgactcactcaccagtgaatctgcaagttctttgg 183
           |||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||| |
Sbjct: 841 cctcacttcctaacactaagcacactgattcactcatcagtgaatccgctagttctttag 782

                                                                       
Query: 184 acagcgcgtgggttcttgcggatccatcactgctactttctggatggcctgcaaacatct 243
           | ||  | || |||||| | ||||||| |||||| ||||||||||| ||||| | |||||
Sbjct: 781 atagaacatgtgttctttcagatccattactgctgctttctggatgacctgccagcatct 722

                                                                       
Query: 244 tcatgccatatctagttaccaaagcatgcagatcacaccagttgccggagacaattggaa 303
           ||||  || || |||  | |||||||||||||||| ||||||| || || |||| |||||
Sbjct: 721 tcatatcagatttagccatcaaagcatgcagatcagaccagttaccagaaacaactggaa 662

                                                                       
Query: 304 gctgcaaagaggctccacgggctgcacgaagagccttttcattgaaaggatcacagcaag 363
           ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 661 gctgcaatgaggctccacgagctgcacgaagagctttttcattgaaaggatcacagcaag 602

                                                                       
Query: 364 ccggaagaagaaacaccccatcccatttgaacgcacaagctgaccttatcaacgttccaa 423
           | ||||||||||| |||||||||||| |||| |||||||| || |||||||| |||||||
Sbjct: 601 ctggaagaagaaataccccatcccatctgaaagcacaagcggatcttatcaatgttccaa 542

                                                                       
Query: 424 ggttacccggatcctgaatcccatcaaggactaggatcctcttgggagactggaacgagg 483
           ||||||| || |||||||||||||| || || |  |||||||| | |||   || | |  
Sbjct: 541 ggttaccagggtcctgaatcccatccagaaccaaaatcctctttgcagagccgagccact 482

                                                                       
Query: 484 catcaagaccagctccaccctcgtcatcaccgaggtcacagaaatgcctgggcatgtgca 543
           |||||||| |||||||||||| |||     | ||||| | ||||| | | |||||||| |
Sbjct: 481 catcaagaacagctccaccctggtcgctgtcaaggtcgcggaaatacttaggcatgtgaa 422

                                                                       
Query: 544 tgacagcaatcgcctcggttgagtcaaccgactgcatcccggagatcttcttcatcacag 603
           ||| ||| || ||||| ||||| ||||| || |||||||| || |  |||||||||||||
Sbjct: 421 tgatagcgattgcctcagttgaatcaactgattgcatcccagaaactttcttcatcacag 362

                                    
Query: 604 tggcgctgacatgcacaacactgcc 628
            ||||||||||| ||| ||| ||||
Sbjct: 361 cggcgctgacatacacgacattgcc 337



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>dbj|AK059852.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G10, full
            insert sequence
          Length = 1098

 Score =  400 bits (202), Expect = e-108
 Identities = 521/625 (83%), Gaps = 2/625 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    ttgtaacataaataa-aagntacccccagcaacagtaaacattcagagattcaaaaatac 63
            ||||||||||||||| ||| |||| || ||||| | ||||||| |||||||||||  |||
Sbjct: 1021 ttgtaacataaataagaagataccacctgcaactg-aaacattaagagattcaaatgtac 963

                                                                        
Query: 64   cttccataggaatgcttacaagatcacaagcttggacggtctcttcagagaggccattgc 123
            ||| |||||||||| ||||||| ||||| ||||| | ||| ||| | || ||||||||||
Sbjct: 962  cttgcataggaatgtttacaagctcacaggcttgaagggtatctgccgaaaggccattgc 903

                                                                        
Query: 124  cctcacttcctaacactaagcacagtgactcactcaccagtgaatctgcaagttctttgg 183
            |||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||| |
Sbjct: 902  cctcacttcctaacactaagcacactgattcactcatcagtgaatccgctagttctttag 843

                                                                        
Query: 184  acagcgcgtgggttcttgcggatccatcactgctactttctggatggcctgcaaacatct 243
            | ||  | || |||||| | ||||||| |||||| ||||||||||| ||||| | |||||
Sbjct: 842  atagaacatgtgttctttcagatccattactgctgctttctggatgacctgccagcatct 783

                                                                        
Query: 244  tcatgccatatctagttaccaaagcatgcagatcacaccagttgccggagacaattggaa 303
            ||||  || || |||  | |||||||||||||||| ||||||| || || |||| |||||
Sbjct: 782  tcatatcagatttagccatcaaagcatgcagatcagaccagttaccagaaacaactggaa 723

                                                                        
Query: 304  gctgcaaagaggctccacgggctgcacgaagagccttttcattgaaaggatcacagcaag 363
            ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 722  gctgcaatgaggctccacgagctgcacgaagagctttttcattgaaaggatcacagcaag 663

                                                                        
Query: 364  ccggaagaagaaacaccccatcccatttgaacgcacaagctgaccttatcaacgttccaa 423
            | ||||||||||| |||||||||||| |||| |||||||| || |||||||| |||||||
Sbjct: 662  ctggaagaagaaataccccatcccatctgaaagcacaagcggatcttatcaatgttccaa 603

                                                                        
Query: 424  ggttacccggatcctgaatcccatcaaggactaggatcctcttgggagactggaacgagg 483
            ||||||| || |||||||||||||| || || |  |||||||| | |||   || | |  
Sbjct: 602  ggttaccagggtcctgaatcccatccagaaccaaaatcctctttgcagagccgagccact 543

                                                                        
Query: 484  catcaagaccagctccaccctcgtcatcaccgaggtcacagaaatgcctgggcatgtgca 543
            |||||||| |||||||||||| |||     | ||||| | ||||| | | |||||||| |
Sbjct: 542  catcaagaacagctccaccctggtcgctgtcaaggtcgcggaaatacttaggcatgtgaa 483

                                                                        
Query: 544  tgacagcaatcgcctcggttgagtcaaccgactgcatcccggagatcttcttcatcacag 603
            ||| ||| || ||||| ||||| ||||| || |||||||| || |  |||||||||||||
Sbjct: 482  tgatagcgattgcctcagttgaatcaactgattgcatcccagaaactttcttcatcacag 423

                                     
Query: 604  tggcgctgacatgcacaacactgcc 628
             ||||||||||| ||| ||| ||||
Sbjct: 422  cggcgctgacatacacgacattgcc 398



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  317 bits (160), Expect = 2e-83
 Identities = 329/383 (85%), Gaps = 2/383 (0%)
 Strand = Plus / Minus

                                                                            
Query: 5        ttgtaacataaataa-aagntacccccagcaacagtaaacattcagagattcaaaaatac 63
                ||||||||||||||| ||| |||| || ||||| | ||||||| |||||||||||  |||
Sbjct: 27024736 ttgtaacataaataagaagataccacctgcaactg-aaacattaagagattcaaatgtac 27024678

                                                                            
Query: 64       cttccataggaatgcttacaagatcacaagcttggacggtctcttcagagaggccattgc 123
                ||| |||||||||| ||||||| ||||| ||||| | ||| ||| | || ||||||||||
Sbjct: 27024677 cttgcataggaatgtttacaagctcacaggcttgaagggtatctgccgaaaggccattgc 27024618

                                                                            
Query: 124      cctcacttcctaacactaagcacagtgactcactcaccagtgaatctgcaagttctttgg 183
                |||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||| |
Sbjct: 27024617 cctcacttcctaacactaagcacactgattcactcatcagtgaatccgctagttctttag 27024558

                                                                            
Query: 184      acagcgcgtgggttcttgcggatccatcactgctactttctggatggcctgcaaacatct 243
                | ||  | || |||||| | ||||||| |||||| ||||||||||| ||||| | |||||
Sbjct: 27024557 atagaacatgtgttctttcagatccattactgctgctttctggatgacctgccagcatct 27024498

                                                                            
Query: 244      tcatgccatatctagttaccaaagcatgcagatcacaccagttgccggagacaattggaa 303
                ||||  || || |||  | |||||||||||||||| ||||||| || || |||| |||||
Sbjct: 27024497 tcatatcagatttagccatcaaagcatgcagatcagaccagttaccagaaacaactggaa 27024438

                                                                            
Query: 304      gctgcaaagaggctccacgggctgcacgaagagccttttcattgaaaggatcacagcaag 363
                ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 27024437 gctgcaatgaggctccacgagctgcacgaagagctttttcattgaaaggatcacagcaag 27024378

                                       
Query: 364      ccggaagaagaaacaccccatcc 386
                | ||||||||||| |||||||||
Sbjct: 27024377 ctggaagaagaaataccccatcc 27024355



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 534      ggcatgtgcatgacagcaatcgcctcggttgagtcaaccgactgcatcccggagatcttc 593
                |||||||| |||| ||| || ||||| ||||| ||||| || |||||||| || |  |||
Sbjct: 27023506 ggcatgtgaatgatagcgattgcctcagttgaatcaactgattgcatcccagaaactttc 27023447

                                                   
Query: 594      ttcatcacagtggcgctgacatgcacaacactgcc 628
                |||||||||| ||||||||||| ||| ||| ||||
Sbjct: 27023446 ttcatcacagcggcgctgacatacacgacattgcc 27023412



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 385      cccatttgaacgcacaagctgaccttatcaacgttccaaggttacccggatcctg 439
                ||||| |||| |||||||| || |||||||| |||||||||||||| || |||||
Sbjct: 27023832 cccatctgaaagcacaagcggatcttatcaatgttccaaggttaccagggtcctg 27023778



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  317 bits (160), Expect = 2e-83
 Identities = 329/383 (85%), Gaps = 2/383 (0%)
 Strand = Plus / Minus

                                                                            
Query: 5        ttgtaacataaataa-aagntacccccagcaacagtaaacattcagagattcaaaaatac 63
                ||||||||||||||| ||| |||| || ||||| | ||||||| |||||||||||  |||
Sbjct: 27116059 ttgtaacataaataagaagataccacctgcaactg-aaacattaagagattcaaatgtac 27116001

                                                                            
Query: 64       cttccataggaatgcttacaagatcacaagcttggacggtctcttcagagaggccattgc 123
                ||| |||||||||| ||||||| ||||| ||||| | ||| ||| | || ||||||||||
Sbjct: 27116000 cttgcataggaatgtttacaagctcacaggcttgaagggtatctgccgaaaggccattgc 27115941

                                                                            
Query: 124      cctcacttcctaacactaagcacagtgactcactcaccagtgaatctgcaagttctttgg 183
                |||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||| |
Sbjct: 27115940 cctcacttcctaacactaagcacactgattcactcatcagtgaatccgctagttctttag 27115881

                                                                            
Query: 184      acagcgcgtgggttcttgcggatccatcactgctactttctggatggcctgcaaacatct 243
                | ||  | || |||||| | ||||||| |||||| ||||||||||| ||||| | |||||
Sbjct: 27115880 atagaacatgtgttctttcagatccattactgctgctttctggatgacctgccagcatct 27115821

                                                                            
Query: 244      tcatgccatatctagttaccaaagcatgcagatcacaccagttgccggagacaattggaa 303
                ||||  || || |||  | |||||||||||||||| ||||||| || || |||| |||||
Sbjct: 27115820 tcatatcagatttagccatcaaagcatgcagatcagaccagttaccagaaacaactggaa 27115761

                                                                            
Query: 304      gctgcaaagaggctccacgggctgcacgaagagccttttcattgaaaggatcacagcaag 363
                ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 27115760 gctgcaatgaggctccacgagctgcacgaagagctttttcattgaaaggatcacagcaag 27115701

                                       
Query: 364      ccggaagaagaaacaccccatcc 386
                | ||||||||||| |||||||||
Sbjct: 27115700 ctggaagaagaaataccccatcc 27115678



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Minus

                                                                            
Query: 534      ggcatgtgcatgacagcaatcgcctcggttgagtcaaccgactgcatcccggagatcttc 593
                |||||||| |||| ||| || ||||| ||||| ||||| || |||||||| || |  |||
Sbjct: 27114829 ggcatgtgaatgatagcgattgcctcagttgaatcaactgattgcatcccagaaactttc 27114770

                                                   
Query: 594      ttcatcacagtggcgctgacatgcacaacactgcc 628
                |||||||||| ||||||||||| ||| ||| ||||
Sbjct: 27114769 ttcatcacagcggcgctgacatacacgacattgcc 27114735



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Minus

                                                                       
Query: 385      cccatttgaacgcacaagctgaccttatcaacgttccaaggttacccggatcctg 439
                ||||| |||| |||||||| || |||||||| |||||||||||||| || |||||
Sbjct: 27115155 cccatctgaaagcacaagcggatcttatcaatgttccaaggttaccagggtcctg 27115101



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>gb|AC087851.4|AC087851 Oryza sativa chromosome 3 BAC OSJNBb0072E24 genomic sequence, complete
             sequence
          Length = 111882

 Score =  317 bits (160), Expect = 2e-83
 Identities = 329/383 (85%), Gaps = 2/383 (0%)
 Strand = Plus / Plus

                                                                         
Query: 5     ttgtaacataaataa-aagntacccccagcaacagtaaacattcagagattcaaaaatac 63
             ||||||||||||||| ||| |||| || ||||| | ||||||| |||||||||||  |||
Sbjct: 34663 ttgtaacataaataagaagataccacctgcaactg-aaacattaagagattcaaatgtac 34721

                                                                         
Query: 64    cttccataggaatgcttacaagatcacaagcttggacggtctcttcagagaggccattgc 123
             ||| |||||||||| ||||||| ||||| ||||| | ||| ||| | || ||||||||||
Sbjct: 34722 cttgcataggaatgtttacaagctcacaggcttgaagggtatctgccgaaaggccattgc 34781

                                                                         
Query: 124   cctcacttcctaacactaagcacagtgactcactcaccagtgaatctgcaagttctttgg 183
             |||||||||||||||||||||||| ||| ||||||| ||||||||| || |||||||| |
Sbjct: 34782 cctcacttcctaacactaagcacactgattcactcatcagtgaatccgctagttctttag 34841

                                                                         
Query: 184   acagcgcgtgggttcttgcggatccatcactgctactttctggatggcctgcaaacatct 243
             | ||  | || |||||| | ||||||| |||||| ||||||||||| ||||| | |||||
Sbjct: 34842 atagaacatgtgttctttcagatccattactgctgctttctggatgacctgccagcatct 34901

                                                                         
Query: 244   tcatgccatatctagttaccaaagcatgcagatcacaccagttgccggagacaattggaa 303
             ||||  || || |||  | |||||||||||||||| ||||||| || || |||| |||||
Sbjct: 34902 tcatatcagatttagccatcaaagcatgcagatcagaccagttaccagaaacaactggaa 34961

                                                                         
Query: 304   gctgcaaagaggctccacgggctgcacgaagagccttttcattgaaaggatcacagcaag 363
             ||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 34962 gctgcaatgaggctccacgagctgcacgaagagctttttcattgaaaggatcacagcaag 35021

                                    
Query: 364   ccggaagaagaaacaccccatcc 386
             | ||||||||||| |||||||||
Sbjct: 35022 ctggaagaagaaataccccatcc 35044



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 79/95 (83%)
 Strand = Plus / Plus

                                                                         
Query: 534   ggcatgtgcatgacagcaatcgcctcggttgagtcaaccgactgcatcccggagatcttc 593
             |||||||| |||| ||| || ||||| ||||| ||||| || |||||||| || |  |||
Sbjct: 35893 ggcatgtgaatgatagcgattgcctcagttgaatcaactgattgcatcccagaaactttc 35952

                                                
Query: 594   ttcatcacagtggcgctgacatgcacaacactgcc 628
             |||||||||| ||||||||||| ||| ||| ||||
Sbjct: 35953 ttcatcacagcggcgctgacatacacgacattgcc 35987



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 48/55 (87%)
 Strand = Plus / Plus

                                                                    
Query: 385   cccatttgaacgcacaagctgaccttatcaacgttccaaggttacccggatcctg 439
             ||||| |||| |||||||| || |||||||| |||||||||||||| || |||||
Sbjct: 35567 cccatctgaaagcacaagcggatcttatcaatgttccaaggttaccagggtcctg 35621



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>emb|BX569693.1| Synechococcus sp. WH8102 complete genome; segment 5/7
          Length = 349213

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                            
Query: 413    caacgttccaaggttacccggatcctgaat 442
              ||||||||||||||| ||||||||||||||
Sbjct: 177697 caacgttccaaggttccccggatcctgaat 177726



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>gb|AC158304.11| Mus musculus chromosome 7, clone RP24-192F23, complete sequence
          Length = 166451

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 29    ccagcaacagtaaacattcaga 50
             ||||||||||||||||||||||
Sbjct: 31844 ccagcaacagtaaacattcaga 31823



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>gb|AC074312.64| Mus musculus strain C57BL/6J clone rp23-311c19 map 7, complete sequence
          Length = 220077

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 29     ccagcaacagtaaacattcaga 50
              ||||||||||||||||||||||
Sbjct: 207382 ccagcaacagtaaacattcaga 207361



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>gb|AC153564.6| Mus musculus 10 BAC RP23-39C23 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 241022

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tgggttgtaacataaataaa 20
              ||||||||||||||||||||
Sbjct: 231509 tgggttgtaacataaataaa 231490



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>ref|XM_762859.1| Giardia lamblia ATCC 50803 axoneme-associated protein
            (GLP_228_6143_4284) partial mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 296  aattggaagctgcaaagagg 315
            ||||||||||||||||||||
Sbjct: 1157 aattggaagctgcaaagagg 1176



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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 606     gcgctgacatgcacaacact 625
               ||||||||||||||||||||
Sbjct: 3706834 gcgctgacatgcacaacact 3706815



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>gb|AC164010.2| Mus musculus chromosome 18, clone RP24-391C15, complete sequence
          Length = 162585

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 243   ttcatgccatatctagttaccaaa 266
             |||||||||||| |||||||||||
Sbjct: 66184 ttcatgccatatatagttaccaaa 66207



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>gb|AC109243.10| Mus musculus chromosome 18, clone RP23-139O19, complete sequence
          Length = 186687

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 243    ttcatgccatatctagttaccaaa 266
              |||||||||||| |||||||||||
Sbjct: 154695 ttcatgccatatatagttaccaaa 154718



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>gb|AC012502.3|AC012502 Homo sapiens BAC clone RP11-461H6 from Y, complete sequence
          Length = 113799

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   ctgctactttctggatggcc 232
             ||||||||||||||||||||
Sbjct: 16295 ctgctactttctggatggcc 16276



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>dbj|BS000015.1| Pan troglodytes chromosome 22 clone:PTB-017F24, map 22, complete
             sequences
          Length = 117746

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    agattcaaaaataccttcca 69
             ||||||||||||||||||||
Sbjct: 95339 agattcaaaaataccttcca 95320



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>gb|AC122566.14| Mus musculus chromosome 5, clone RP24-259O11, complete sequence
          Length = 146459

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 41     aacattcagagattcaaaaataccttcc 68
              ||||||||||| ||||||||| ||||||
Sbjct: 113853 aacattcagagcttcaaaaatcccttcc 113826



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>gb|AF222685.1|AF222685 Homo sapiens chromosome 21 PAC 103K19 map 21q11.2, complete sequence
          Length = 85040

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    agattcaaaaataccttcca 69
             ||||||||||||||||||||
Sbjct: 35617 agattcaaaaataccttcca 35598



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>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     agattcaaaaataccttcca 69
              ||||||||||||||||||||
Sbjct: 193813 agattcaaaaataccttcca 193794



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>emb|CT009540.10| M.truncatula DNA sequence from clone MTH2-39B3 on chromosome 3,
             complete sequence
          Length = 127327

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    aaaaataccttccataggaa 75
             ||||||||||||||||||||
Sbjct: 51293 aaaaataccttccataggaa 51312



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>gb|AC093316.28| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202i7, complete
             sequence
          Length = 226567

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     tgggttgtaacataaataaa 20
             ||||||||||||||||||||
Sbjct: 76892 tgggttgtaacataaataaa 76911


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,803,052
Number of Sequences: 3902068
Number of extensions: 5803052
Number of successful extensions: 103614
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103484
Number of HSP's gapped (non-prelim): 120
length of query: 630
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 607
effective length of database: 17,143,297,704
effective search space: 10405981706328
effective search space used: 10405981706328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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