ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38m15
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT024125.1| Zea mays clone EL01N0450F09 mRNA sequence 196 6e-47
2ref|XM_478310.1| Oryza sativa (japonica cultivar-group), mRNA 172 9e-40
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
4dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 157 5e-35
5gb|AY110428.1| Zea mays CL12955_1 mRNA sequence 139 1e-29
6ref|XM_473840.1| Oryza sativa (japonica cultivar-group), predic... 50 0.009
7emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4,... 50 0.009
8emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4,... 50 0.009
9dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.009
10dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
11emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 50 0.009
12ref|NM_118982.1| Arabidopsis thaliana catalytic/ protein phospha... 48 0.036
13gb|AY091272.1| Arabidopsis thaliana putative protein phosphatase... 48 0.036
14gb|AY059737.1| Arabidopsis thaliana putative protein phosphatase... 48 0.036
15emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, ... 46 0.14
16emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BA... 46 0.14
17emb|AL772270.24| Mouse DNA sequence from clone RP23-272I16 on ch... 46 0.14
18ref|NM_112389.2| Arabidopsis thaliana catalytic/ protein phospha... 44 0.56
19ref|NM_202589.1| Arabidopsis thaliana catalytic/ protein phospha... 44 0.56
20emb|AJ242593.1|BA1242593 Bacteriophage A118 complete genome 44 0.56
21gb|BT008532.1| Arabidopsis thaliana clone U50547 putative protei... 44 0.56
22gb|AY120770.1| Arabidopsis thaliana putative protein phosphatase... 44 0.56
23dbj|AK117480.1| Arabidopsis thaliana At3g15260 mRNA for putative... 44 0.56
24gb|AC009468.3| Homo sapiens BAC clone GS1-278J22 from 7, complet... 42 2.2
25gb|AC142323.1| Pan troglodytes BAC clone RP43-72N8 from 7, compl... 42 2.2
26ref|NM_001031507.1| Gallus gallus similar to 4930438D12Rik prote... 42 2.2
27emb|AJ719948.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.2
28dbj|AP000413.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 42 2.2
29emb|AL844171.13| Zebrafish DNA sequence from clone DKEY-237G17, ... 42 2.2
30gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.2
31ref|NM_121112.3| Arabidopsis thaliana catalytic/ protein phospha... 40 8.7
32gb|AY534757.1| Lycopersicon esculentum protein phosphatase 2C mR... 40 8.7
33gb|AC123909.2| Homo sapiens chromosome 16 clone RP11-27L11, comp... 40 8.7
34gb|AC134441.4| Mus musculus BAC clone RP24-544J6 from chromosome... 40 8.7
35gb|AC127549.3| Mus musculus BAC clone RP24-510G5 from chromosome... 40 8.7
36ref|XM_649514.1| Entamoeba histolytica HM-1:IMSS protein phospha... 40 8.7
37gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, comple... 40 8.7
38emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; se... 40 8.7
39emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4,... 40 8.7
40emb|AL392144.1|ATMAJ23 Arabidopsis thaliana DNA chromosome 5, P1... 40 8.7
41emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, B... 40 8.7
42gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence 40 8.7
43gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, co... 40 8.7
44gb|AC074276.18| Homo sapiens 3 BAC RP11-113A11 (Roswell Park Can... 40 8.7
45gb|AC112502.7| Homo sapiens 3 BAC RP11-880C10 (Roswell Park Canc... 40 8.7
46gb|AC084167.6| Homo sapiens chromosome 17, clone CTD-2334L1, com... 40 8.7
47emb|CR385048.3| Wallaby DNA sequence from clone XX-121C8, comple... 40 8.7
48gb|AC020559.4|AC020559 Homo sapiens BAC clone RP11-527F13 from 6... 40 8.7
49emb|BX832330.1|CNS0A151 Arabidopsis thaliana Full-length cDNA Co... 40 8.7
50emb|BX833175.1|CNS0A0M6 Arabidopsis thaliana Full-length cDNA Co... 40 8.7
51gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome... 40 8.7
52gb|BC094145.1| Xenopus laevis cDNA clone MGC:114756 IMAGE:701164... 40 8.7
53gb|BT005431.1| Arabidopsis thaliana clone U50442 putative protei... 40 8.7
54gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, com... 40 8.7
55gb|AY087522.1| Arabidopsis thaliana clone 36315 mRNA, complete s... 40 8.7
56dbj|AK117549.1| Arabidopsis thaliana At5g10740 mRNA for putative... 40 8.7
57gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.64... 40 8.7
58gb|L14570.1|HIV1CM237X Human immunodeficiency virus type 1 (CM23... 40 8.7 
>gb|BT024125.1| Zea mays clone EL01N0450F09 mRNA sequence
          Length = 1431

 Score =  196 bits (99), Expect = 6e-47
 Identities = 198/231 (85%)
 Strand = Plus / Minus

                                                                       
Query: 384 tggctcagaactgaggtgctttttcaagctccggtctccgaatgctcttgcaacagccag 443
           ||||||| | ||||||||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct: 992 tggctcaaagctgaggtgcttcttcaagctccggtctccaaatgcccttgcaactgccag 933

                                                                       
Query: 444 ctgcccatcaactcgtgggacatctcctggtaggttcgaaacaaatccacctttttcctc 503
           |||||||||||| ||||| ||||| || |||||||| || ||||| ||||| || | |||
Sbjct: 932 ctgcccatcaacacgtggcacatcacccggtaggtttgatacaaagccacccttctgctc 873

                                                                       
Query: 504 aataatttgtcgctccatgctaggctcatgatcaactgaaagctgctctgctttaccatt 563
            ||  |||||||||||||| | || ||||| ||||||||||||||||| |||  ||| ||
Sbjct: 872 gatcgtttgtcgctccatgtttggttcatggtcaactgaaagctgctccgctacaccgtt 813

                                                              
Query: 564 cttgctaataactgctcgtgaatctccaatatttgcgaccactagcttcac 614
           ||||||||||||||| |||||||| |||| |||||| || ||||| |||||
Sbjct: 812 cttgctaataactgcccgtgaatccccaacatttgcaacaactagtttcac 762



 Score =  141 bits (71), Expect = 3e-30
 Identities = 122/139 (87%)
 Strand = Plus / Minus

                                                                        
Query: 205  atgtcgtctttgctcttcctgttcaccgcctgctccgttagatgtttcgcagctgcctgt 264
            ||||||||||||||||||| |||||| ||||||||||| || || || ||||||||||| 
Sbjct: 1171 atgtcgtctttgctcttccggttcacggcctgctccgtcaggtgcttggcagctgcctgc 1112

                                                                        
Query: 265  gcgtccctgatgtccttgatctcatcaacagcctcttggttggtcatcaccttccacagg 324
            |||||| ||   ||||||||||| || |||||||| ||||||| |||||||||||| | |
Sbjct: 1111 gcgtccttgcaatccttgatctcgtcgacagcctcctggttggacatcaccttccataag 1052

                               
Query: 325  ccatcacttgctagaatta 343
            |||||||||||||||||||
Sbjct: 1051 ccatcacttgctagaatta 1033
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>ref|XM_478310.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 888

 Score =  172 bits (87), Expect = 9e-40
 Identities = 240/291 (82%)
 Strand = Plus / Minus

                                                                       
Query: 325 ccatcacttgctagaattaggaaatctgaactctcatcgatgacttcctcagccacgtgt 384
           ||||||||||| |||||||| ||||| | | |||| || ||   ||||||  |||| | |
Sbjct: 722 ccatcacttgcaagaattagaaaatcagtattctcgtctataggttcctccaccacatct 663

                                                                       
Query: 385 ggctcagaactgaggtgctttttcaagctccggtctccgaatgctcttgcaacagccagc 444
           ||||| || ||||||||||| || | |||||||||||| ||||| |||||||| || |||
Sbjct: 662 ggctctgagctgaggtgcttctttaggctccggtctccaaatgcccttgcaaccgcaagc 603

                                                                       
Query: 445 tgcccatcaactcgtgggacatctcctggtaggttcgaaacaaatccacctttttcctca 504
           || |||||||| || || ||||||||||||| ||| |||||||| |||||||||| ||| 
Sbjct: 602 tgaccatcaacacgcggtacatctcctggtaagtttgaaacaaagccaccttttttctcg 543

                                                                       
Query: 505 ataatttgtcgctccatgctaggctcatgatcaactgaaagctgctctgctttaccattc 564
           ||    || |||||| || | || ||||||||||| |||||||| | ||||  |||| ||
Sbjct: 542 attgaatgccgctccttgtttggttcatgatcaaccgaaagctgttttgctacaccactc 483

                                                              
Query: 565 ttgctaataactgctcgtgaatctccaatatttgcgaccactagcttcaca 615
           |||||||||||||||||||||||||||| |||||| || ||||| ||||||
Sbjct: 482 ttgctaataactgctcgtgaatctccaacatttgcaactactaggttcaca 432



 Score =  149 bits (75), Expect = 1e-32
 Identities = 126/143 (88%)
 Strand = Plus / Minus

                                                                       
Query: 174 ctagcagtggaagtttacgacgacgcaggagatgtcgtctttgctcttcctgttcaccgc 233
           ||||||| |||| ||||| |||| ||||||||||||||||||||| |||| |||||| ||
Sbjct: 888 ctagcagaggaattttacaacgatgcaggagatgtcgtctttgcttttccggttcacggc 829

                                                                       
Query: 234 ctgctccgttagatgtttcgcagctgcctgtgcgtccctgatgtccttgatctcatcaac 293
           ||||||||| ||||| |||||||||||||| || ||| ||| ||||||||| ||||| ||
Sbjct: 828 ctgctccgtcagatgcttcgcagctgcctgagcatccttgaagtccttgatttcatccac 769

                                  
Query: 294 agcctcttggttggtcatcacct 316
            ||||||||||||| ||||||||
Sbjct: 768 cgcctcttggttggacatcacct 746
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  157 bits (79), Expect = 5e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                            
Query: 170      tctgctagcagtggaagtttacgacgacgcaggagatgtcgtctttgctcttcctgttca 229
                ||||||||||| |||| ||||| |||| ||||||||||||||||||||| |||| |||||
Sbjct: 19189982 tctgctagcagaggaattttacaacgatgcaggagatgtcgtctttgcttttccggttca 19190041

                                                                            
Query: 230      ccgcctgctccgttagatgtttcgcagctgcctgtgcgtccctgatgtccttgatctcat 289
                | ||||||||||| ||||| |||||||||||||| || ||| ||| ||||||||| ||||
Sbjct: 19190042 cggcctgctccgtcagatgcttcgcagctgcctgagcatccttgaagtccttgatttcat 19190101

                                           
Query: 290      caacagcctcttggttggtcatcacct 316
                | || ||||||||||||| ||||||||
Sbjct: 19190102 ccaccgcctcttggttggacatcacct 19190128



 Score =  101 bits (51), Expect = 3e-18
 Identities = 123/147 (83%)
 Strand = Plus / Plus

                                                                            
Query: 469      cctggtaggttcgaaacaaatccacctttttcctcaataatttgtcgctccatgctaggc 528
                ||||||| ||| |||||||| |||||||||| ||| ||    || |||||| || | || 
Sbjct: 19191642 cctggtaagtttgaaacaaagccaccttttttctcgattgaatgccgctccttgtttggt 19191701

                                                                            
Query: 529      tcatgatcaactgaaagctgctctgctttaccattcttgctaataactgctcgtgaatct 588
                ||||||||||| |||||||| | ||||  |||| ||||||||||||||||||||||||||
Sbjct: 19191702 tcatgatcaaccgaaagctgttttgctacaccactcttgctaataactgctcgtgaatct 19191761

                                           
Query: 589      ccaatatttgcgaccactagcttcaca 615
                |||| |||||| || ||||| ||||||
Sbjct: 19191762 ccaacatttgcaactactaggttcaca 19191788



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                            
Query: 309      catcaccttccacaggccatcacttgctagaattaggaaatctgaactctcatcgatgac 368
                |||||||||||| |  ||||||||||| |||||||| ||||| | | |||| || ||   
Sbjct: 19191052 catcaccttccataatccatcacttgcaagaattagaaaatcagtattctcgtctatagg 19191111

                                                                            
Query: 369      ttcctcagccacgtgtggctcagaactgaggtgctttttcaagctccggtctccgaatgc 428
                ||||||  |||| | |||||| || ||||||||||| || | |||||||||||| |||||
Sbjct: 19191112 ttcctccaccacatctggctctgagctgaggtgcttctttaggctccggtctccaaatgc 19191171

                                                            
Query: 429      tcttgcaacagccagctgcccatcaactcgtgggacatctcctg 472
                 |||||||| || ||||| |||||||| || || ||||||||||
Sbjct: 19191172 ccttgcaaccgcaagctgaccatcaacacgcggtacatctcctg 19191215
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>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0062D12
          Length = 155408

 Score =  157 bits (79), Expect = 5e-35
 Identities = 130/147 (88%)
 Strand = Plus / Plus

                                                                          
Query: 170    tctgctagcagtggaagtttacgacgacgcaggagatgtcgtctttgctcttcctgttca 229
              ||||||||||| |||| ||||| |||| ||||||||||||||||||||| |||| |||||
Sbjct: 113377 tctgctagcagaggaattttacaacgatgcaggagatgtcgtctttgcttttccggttca 113436

                                                                          
Query: 230    ccgcctgctccgttagatgtttcgcagctgcctgtgcgtccctgatgtccttgatctcat 289
              | ||||||||||| ||||| |||||||||||||| || ||| ||| ||||||||| ||||
Sbjct: 113437 cggcctgctccgtcagatgcttcgcagctgcctgagcatccttgaagtccttgatttcat 113496

                                         
Query: 290    caacagcctcttggttggtcatcacct 316
              | || ||||||||||||| ||||||||
Sbjct: 113497 ccaccgcctcttggttggacatcacct 113523



 Score =  101 bits (51), Expect = 3e-18
 Identities = 123/147 (83%)
 Strand = Plus / Plus

                                                                          
Query: 469    cctggtaggttcgaaacaaatccacctttttcctcaataatttgtcgctccatgctaggc 528
              ||||||| ||| |||||||| |||||||||| ||| ||    || |||||| || | || 
Sbjct: 115037 cctggtaagtttgaaacaaagccaccttttttctcgattgaatgccgctccttgtttggt 115096

                                                                          
Query: 529    tcatgatcaactgaaagctgctctgctttaccattcttgctaataactgctcgtgaatct 588
              ||||||||||| |||||||| | ||||  |||| ||||||||||||||||||||||||||
Sbjct: 115097 tcatgatcaaccgaaagctgttttgctacaccactcttgctaataactgctcgtgaatct 115156

                                         
Query: 589    ccaatatttgcgaccactagcttcaca 615
              |||| |||||| || ||||| ||||||
Sbjct: 115157 ccaacatttgcaactactaggttcaca 115183



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 134/164 (81%)
 Strand = Plus / Plus

                                                                          
Query: 309    catcaccttccacaggccatcacttgctagaattaggaaatctgaactctcatcgatgac 368
              |||||||||||| |  ||||||||||| |||||||| ||||| | | |||| || ||   
Sbjct: 114447 catcaccttccataatccatcacttgcaagaattagaaaatcagtattctcgtctatagg 114506

                                                                          
Query: 369    ttcctcagccacgtgtggctcagaactgaggtgctttttcaagctccggtctccgaatgc 428
              ||||||  |||| | |||||| || ||||||||||| || | |||||||||||| |||||
Sbjct: 114507 ttcctccaccacatctggctctgagctgaggtgcttctttaggctccggtctccaaatgc 114566

                                                          
Query: 429    tcttgcaacagccagctgcccatcaactcgtgggacatctcctg 472
               |||||||| || ||||| |||||||| || || ||||||||||
Sbjct: 114567 ccttgcaaccgcaagctgaccatcaacacgcggtacatctcctg 114610
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>gb|AY110428.1| Zea mays CL12955_1 mRNA sequence
          Length = 657

 Score =  139 bits (70), Expect = 1e-29
 Identities = 121/138 (87%)
 Strand = Plus / Plus

                                                                       
Query: 205 atgtcgtctttgctcttcctgttcaccgcctgctccgttagatgtttcgcagctgcctgt 264
           |||||||||||||||||||  ||||| ||||||||||| || || || ||||||||||| 
Sbjct: 252 atgtcgtctttgctcttccgattcacggcctgctccgtcaggtgcttggcagctgcctgc 311

                                                                       
Query: 265 gcgtccctgatgtccttgatctcatcaacagcctcttggttggtcatcaccttccacagg 324
           |||||| ||   ||||||||||| || |||||||| ||||||| |||||||||||||| |
Sbjct: 312 gcgtccttgcaatccttgatctcgtcgacagcctcctggttggacatcaccttccacaag 371

                             
Query: 325 ccatcacttgctagaatt 342
           ||||||||||||||||||
Sbjct: 372 ccatcacttgctagaatt 389



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 154/187 (82%), Gaps = 3/187 (1%)
 Strand = Plus / Plus

                                                                       
Query: 424 aatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctggtaggttcgaa 483
           ||||| |||||||| ||||||||||||||||| ||||| ||||| || |||||||| || 
Sbjct: 471 aatgcccttgcaactgccagctgcccatcaacacgtggcacatcacccggtaggtttgat 530

                                                                       
Query: 484 acaaatccacctttttcctcaataatttgtcgctccatgctaggctcatgatcaactgaa 543
           ||||| ||||| || | ||| ||  |||| ||||||||| | || ||||| |||||||||
Sbjct: 531 acaaagccacccttctgctcgatcgtttg-cgctccatgtttggttcatggtcaactgaa 589

                                                                       
Query: 544 agctgctctgctttaccat-tcttg-ctaataactgctcgtgaatctccaatatttgcga 601
           |||||||  |||  ||| | ||||| ||||||||||| || ||||| |||| |||||| |
Sbjct: 590 agctgcttcgctacaccgtgtcttgcctaataactgcccgngaatccccaacatttgcaa 649

                  
Query: 602 ccactag 608
           | |||||
Sbjct: 650 caactag 656
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>ref|XM_473840.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 192 gacgacgcaggagatgtcgtctttgctcttcct 224
           ||||| ||||||||||||||| |||||||||||
Sbjct: 936 gacgatgcaggagatgtcgtccttgctcttcct 904
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>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03,
              complete sequence
          Length = 179798

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                               
Query: 192    gacgacgcaggagatgtcgtctttgctcttcct 224
              ||||| ||||||||||||||| |||||||||||
Sbjct: 177029 gacgatgcaggagatgtcgtccttgctcttcct 177061
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>emb|AL606684.3|OSJN00088 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0085I10,
            complete sequence
          Length = 150551

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                             
Query: 192  gacgacgcaggagatgtcgtctttgctcttcct 224
            ||||| ||||||||||||||| |||||||||||
Sbjct: 6876 gacgatgcaggagatgtcgtccttgctcttcct 6908
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                                 
Query: 192      gacgacgcaggagatgtcgtctttgctcttcct 224
                ||||| ||||||||||||||| |||||||||||
Sbjct: 30909508 gacgatgcaggagatgtcgtccttgctcttcct 30909540



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 8        tttgaacaaacaacaatattctaaaaaa 35
                ||||||||||||||||| || |||||||
Sbjct: 16797458 tttgaacaaacaacaattttttaaaaaa 16797485
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>dbj|AK070129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047A13, full
            insert sequence
          Length = 1585

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 192  gacgacgcaggagatgtcgtctttgctcttcct 224
            ||||| ||||||||||||||| |||||||||||
Sbjct: 1210 gacgatgcaggagatgtcgtccttgctcttcct 1178
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>emb|AL442105.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0702G05, complete
             sequence
          Length = 134586

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 192   gacgacgcaggagatgtcgtctttgctcttcct 224
             ||||| ||||||||||||||| |||||||||||
Sbjct: 86502 gacgatgcaggagatgtcgtccttgctcttcct 86534
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>ref|NM_118982.1| Arabidopsis thaliana catalytic/ protein phosphatase type 2C
           AT4G28400 mRNA, complete cds
          Length = 1214

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 418 tctccgaatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctgg 473
           ||||| |||||||||||||| || | ||| ||||| |||||||| ||||| |||||
Sbjct: 756 tctccaaatgctcttgcaaccgctaactgtccatccactcgtggaacatcccctgg 701



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 179 agtggaagtttacgacgacgcaggagatgtcgtctttgctcttcct 224
           ||||||| ||||| ||||  || |||||||| ||||||||||||||
Sbjct: 995 agtggaactttacaacgatacatgagatgtcatctttgctcttcct 950
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>gb|AY091272.1| Arabidopsis thaliana putative protein phosphatase 2C (At4g28400)
           mRNA, complete cds
          Length = 883

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 418 tctccgaatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctgg 473
           ||||| |||||||||||||| || | ||| ||||| |||||||| ||||| |||||
Sbjct: 611 tctccaaatgctcttgcaaccgctaactgtccatccactcgtggaacatcccctgg 556



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 179 agtggaagtttacgacgacgcaggagatgtcgtctttgctcttcct 224
           ||||||| ||||| ||||  || |||||||| ||||||||||||||
Sbjct: 850 agtggaactttacaacgatacatgagatgtcatctttgctcttcct 805
to top
>gb|AY059737.1| Arabidopsis thaliana putative protein phosphatase 2C (At4g28400)
           mRNA, complete cds
          Length = 1231

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                   
Query: 418 tctccgaatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctgg 473
           ||||| |||||||||||||| || | ||| ||||| |||||||| ||||| |||||
Sbjct: 756 tctccaaatgctcttgcaaccgctaactgtccatccactcgtggaacatcccctgg 701



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 179 agtggaagtttacgacgacgcaggagatgtcgtctttgctcttcct 224
           ||||||| ||||| ||||  || |||||||| ||||||||||||||
Sbjct: 995 agtggaactttacaacgatacatgagatgtcatctttgctcttcct 950
to top
>emb|AL161572.2|ATCHRIV68 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 68
          Length = 199749

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                     
Query: 418    tctccgaatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctg 472
              ||||| |||||||||||||| || | ||| ||||| |||||||| ||||| ||||
Sbjct: 165262 tctccaaatgctcttgcaaccgctaactgtccatccactcgtggaacatcccctg 165208



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                            
Query: 179    agtggaagtttacgacgacgcaggagatgtcgtctttgctcttcct 224
              ||||||| ||||| ||||  || |||||||| ||||||||||||||
Sbjct: 165599 agtggaactttacaacgatacatgagatgtcatctttgctcttcct 165554
to top
>emb|AL021749.1|ATF20O9 Arabidopsis thaliana DNA chromosome 4, BAC clone F20O9 (ESSA project)
          Length = 93695

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 47/55 (85%)
 Strand = Plus / Minus

                                                                    
Query: 418   tctccgaatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctg 472
             ||||| |||||||||||||| || | ||| ||||| |||||||| ||||| ||||
Sbjct: 27345 tctccaaatgctcttgcaaccgctaactgtccatccactcgtggaacatcccctg 27291



 Score = 44.1 bits (22), Expect = 0.56
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                           
Query: 179   agtggaagtttacgacgacgcaggagatgtcgtctttgctcttcct 224
             ||||||| ||||| ||||  || |||||||| ||||||||||||||
Sbjct: 27682 agtggaactttacaacgatacatgagatgtcatctttgctcttcct 27637
to top
>emb|AL772270.24| Mouse DNA sequence from clone RP23-272I16 on chromosome 4, complete
             sequence
          Length = 146140

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 7     ctttgaacaaacaacaatattct 29
             |||||||||||||||||||||||
Sbjct: 60786 ctttgaacaaacaacaatattct 60808
to top
>ref|NM_112389.2| Arabidopsis thaliana catalytic/ protein phosphatase type 2C
           AT3G15260 transcript variant AT3G15260.1 mRNA, complete
           cds
          Length = 1149

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 289 tcaacagcctcttggttggtcatcaccttccacaggccatcacttgctag 338
           ||||| || |||||||| | ||| |||||||| || ||||||||||||||
Sbjct: 904 tcaacggcttcttggtttgacatgaccttccatagtccatcacttgctag 855



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 424 aatgctcttgcaacagccagctgcccatcaactcgtgggacatc 467
           ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct: 769 aatgcccttgccacagccagttgaccatcaactcgaggaacatc 726
to top
>ref|NM_202589.1| Arabidopsis thaliana catalytic/ protein phosphatase type 2C
           AT3G15260 transcript variant AT3G15260.2 mRNA, complete
           cds
          Length = 1277

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 289 tcaacagcctcttggttggtcatcaccttccacaggccatcacttgctag 338
           ||||| || |||||||| | ||| |||||||| || ||||||||||||||
Sbjct: 904 tcaacggcttcttggtttgacatgaccttccatagtccatcacttgctag 855



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 424 aatgctcttgcaacagccagctgcccatcaactcgtgggacatc 467
           ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct: 769 aatgcccttgccacagccagttgaccatcaactcgaggaacatc 726
to top
>emb|AJ242593.1|BA1242593 Bacteriophage A118 complete genome
          Length = 40834

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 55    tggattattcccaacaagaaaa 76
             ||||||||||||||||||||||
Sbjct: 38761 tggattattcccaacaagaaaa 38782
to top
>gb|BT008532.1| Arabidopsis thaliana clone U50547 putative protein phosphatase 2C
           (PP2C) (At3g15260) mRNA, complete cds
          Length = 901

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 289 tcaacagcctcttggttggtcatcaccttccacaggccatcacttgctag 338
           ||||| || |||||||| | ||| |||||||| || ||||||||||||||
Sbjct: 758 tcaacggcttcttggtttgacatgaccttccatagtccatcacttgctag 709



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 424 aatgctcttgcaacagccagctgcccatcaactcgtgggacatc 467
           ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct: 623 aatgcccttgccacagccagttgaccatcaactcgaggaacatc 580
to top
>gb|AY120770.1| Arabidopsis thaliana putative protein phosphatase type 2C
           (At3g15260) mRNA, complete cds
          Length = 1088

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 289 tcaacagcctcttggttggtcatcaccttccacaggccatcacttgctag 338
           ||||| || |||||||| | ||| |||||||| || ||||||||||||||
Sbjct: 875 tcaacggcttcttggtttgacatgaccttccatagtccatcacttgctag 826



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 424 aatgctcttgcaacagccagctgcccatcaactcgtgggacatc 467
           ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct: 740 aatgcccttgccacagccagttgaccatcaactcgaggaacatc 697
to top
>dbj|AK117480.1| Arabidopsis thaliana At3g15260 mRNA for putative protein
           phosphatase type 2C, complete cds, clone: RAFL17-09-F20
          Length = 1245

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 289 tcaacagcctcttggttggtcatcaccttccacaggccatcacttgctag 338
           ||||| || |||||||| | ||| |||||||| || ||||||||||||||
Sbjct: 872 tcaacggcttcttggtttgacatgaccttccatagtccatcacttgctag 823



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 424 aatgctcttgcaacagccagctgcccatcaactcgtgggacatc 467
           ||||| ||||| |||||||| || ||||||||||| || |||||
Sbjct: 737 aatgcccttgccacagccagttgaccatcaactcgaggaacatc 694
to top
>gb|AC009468.3| Homo sapiens BAC clone GS1-278J22 from 7, complete sequence
          Length = 152517

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 549   ctctgctttaccattcttgctaata 573
             ||||||| |||||||||||||||||
Sbjct: 21034 ctctgctataccattcttgctaata 21010
to top
>gb|AC142323.1| Pan troglodytes BAC clone RP43-72N8 from 7, complete sequence
          Length = 190220

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 549   ctctgctttaccattcttgctaata 573
             ||||||| |||||||||||||||||
Sbjct: 44182 ctctgctataccattcttgctaata 44158
to top
>ref|NM_001031507.1| Gallus gallus similar to 4930438D12Rik protein (LOC428387), mRNA
          Length = 2051

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 338  gaattaggaaatctgaactct 358
            |||||||||||||||||||||
Sbjct: 1459 gaattaggaaatctgaactct 1439
to top
>emb|AJ719948.1| Gallus gallus mRNA for hypothetical protein, clone 8k18
          Length = 2051

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 338  gaattaggaaatctgaactct 358
            |||||||||||||||||||||
Sbjct: 1459 gaattaggaaatctgaactct 1439
to top
>dbj|AP000413.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone: K7L4
          Length = 65047

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                              
Query: 424   aatgctcttgcaacagccagctgcccatcaactcgtgggacatctcctg 472
             ||||| ||||| |||||||| || ||||||||||| || ||||| ||||
Sbjct: 19417 aatgcccttgccacagccagttgaccatcaactcgaggaacatcccctg 19369
to top
>emb|AL844171.13| Zebrafish DNA sequence from clone DKEY-237G17, complete sequence
          Length = 172321

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 12     aacaaacaacaatattctaaaaaac 36
              ||||||||||||| |||||||||||
Sbjct: 106647 aacaaacaacaattttctaaaaaac 106623
to top
>gb|AE016815.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome II,
              complete sequence
          Length = 867699

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 241    gttagatgtttcgcagctgcc 261
              |||||||||||||||||||||
Sbjct: 468683 gttagatgtttcgcagctgcc 468663
to top
>ref|NM_121112.3| Arabidopsis thaliana catalytic/ protein phosphatase type 2C/
           protein serine/threonine phosphatase AT5G10740 mRNA,
           complete cds
          Length = 1513

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 ccacaggccatcacttgctagaat 341
           |||||| |||||||||||||||||
Sbjct: 922 ccacagtccatcacttgctagaat 899
to top
>gb|AY534757.1| Lycopersicon esculentum protein phosphatase 2C mRNA, complete cds
          Length = 1082

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 406 ttcaagctccggtctccgaatgctcttgcaacagccagctgcccatcaactcgtgggaca 465
           |||||||||  ||| || ||||||||||| || || | |||||||||||| || || |||
Sbjct: 635 ttcaagctcttgtcgccaaatgctcttgctactgctaactgcccatcaacccgaggaaca 576

                   
Query: 466 tctcctgg 473
           || |||||
Sbjct: 575 tcacctgg 568
to top
>gb|AC123909.2| Homo sapiens chromosome 16 clone RP11-27L11, complete sequence
          Length = 134922

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 368   cttcctcagccacgtgtggc 387
             ||||||||||||||||||||
Sbjct: 28715 cttcctcagccacgtgtggc 28696
to top
>gb|AC134441.4| Mus musculus BAC clone RP24-544J6 from chromosome 5, complete sequence
          Length = 177565

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 123    tctgacataaaagcaattgtacac 146
              ||||||||||||||||||| ||||
Sbjct: 142130 tctgacataaaagcaattgaacac 142153
to top
>gb|AC127549.3| Mus musculus BAC clone RP24-510G5 from chromosome 5, complete sequence
          Length = 152564

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 123   tctgacataaaagcaattgtacac 146
             ||||||||||||||||||| ||||
Sbjct: 10586 tctgacataaaagcaattgaacac 10609
to top
>ref|XM_649514.1| Entamoeba histolytica HM-1:IMSS protein phosphatase (49.t00019)
            partial mRNA
          Length = 2694

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 569  taataactgctcgtgaatctccaatatt 596
            |||||| ||||| |||||||||||||||
Sbjct: 2104 taataattgctcttgaatctccaatatt 2077
to top
>gb|AC004966.2| Homo sapiens PAC clone RP5-1107K15 from 7, complete sequence
          Length = 134084

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    ggattattcccaacaagaaa 75
             ||||||||||||||||||||
Sbjct: 12147 ggattattcccaacaagaaa 12128
to top
>emb|BX572092.1| Prochlorococcus marinus MED4 complete genome; segment 3/5
          Length = 348178

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    cctttttcctcaataatttg 512
              ||||||||||||||||||||
Sbjct: 326543 cctttttcctcaataatttg 326562
to top
>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07,
             complete sequence
          Length = 138383

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 8     tttgaacaaacaacaatattctaaaaaa 35
             ||||||||||||||||| || |||||||
Sbjct: 47889 tttgaacaaacaacaattttttaaaaaa 47916
to top
>emb|AL392144.1|ATMAJ23 Arabidopsis thaliana DNA chromosome 5, P1 clone MAJ23 (ESSA project)
          Length = 42694

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 318   ccacaggccatcacttgctagaat 341
             |||||| |||||||||||||||||
Sbjct: 34247 ccacagtccatcacttgctagaat 34270
to top
>emb|AL365234.1|ATT30N20 Arabidopsis thaliana DNA chromosome 5, BAC clone T30N20 (ESSA
            project)
          Length = 98473

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 318  ccacaggccatcacttgctagaat 341
            |||||| |||||||||||||||||
Sbjct: 1872 ccacagtccatcacttgctagaat 1895
to top
>gb|AC018529.12| Homo sapiens, clone RP11-4B16, complete sequence
          Length = 185590

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    acttgctagaattaggaaat 349
              ||||||||||||||||||||
Sbjct: 166979 acttgctagaattaggaaat 166960
to top
>gb|AC100863.2| Homo sapiens chromosome 18, clone RP11-751H17, complete sequence
          Length = 175527

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 330   acttgctagaattaggaaat 349
             ||||||||||||||||||||
Sbjct: 76661 acttgctagaattaggaaat 76642
to top
>gb|AC074276.18| Homo sapiens 3 BAC RP11-113A11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 191241

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 541  gaaagctgctctgctttacc 560
            ||||||||||||||||||||
Sbjct: 5614 gaaagctgctctgctttacc 5595
to top
>gb|AC112502.7| Homo sapiens 3 BAC RP11-880C10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 104564

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 548   gctctgctttaccattcttgctaa 571
             ||||||||||||||| ||||||||
Sbjct: 59946 gctctgctttaccatgcttgctaa 59923
to top
>gb|AC084167.6| Homo sapiens chromosome 17, clone CTD-2334L1, complete sequence
          Length = 48508

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   aacaacaatattctaaaaaa 35
            ||||||||||||||||||||
Sbjct: 6742 aacaacaatattctaaaaaa 6761
to top
>emb|CR385048.3| Wallaby DNA sequence from clone XX-121C8, complete sequence
          Length = 37081

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 296  cctcttggttggtcatcaccttcc 319
            |||||||||||||||||| |||||
Sbjct: 2125 cctcttggttggtcatcatcttcc 2102
to top
>gb|AC020559.4|AC020559 Homo sapiens BAC clone RP11-527F13 from 6, complete sequence
          Length = 194079

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    atcaactgaaagctgctctg 553
              ||||||||||||||||||||
Sbjct: 134826 atcaactgaaagctgctctg 134845
to top
>emb|BX832330.1|CNS0A151 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH66ZB04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1451

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 ccacaggccatcacttgctagaat 341
           |||||| |||||||||||||||||
Sbjct: 915 ccacagtccatcacttgctagaat 892
to top
>emb|BX833175.1|CNS0A0M6 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL37ZG06 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1367

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 ccacaggccatcacttgctagaat 341
           |||||| |||||||||||||||||
Sbjct: 787 ccacagtccatcacttgctagaat 764
to top
>gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome 13, complete sequence
          Length = 179176

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 12     aacaaacaacaatattctaa 31
              ||||||||||||||||||||
Sbjct: 144788 aacaaacaacaatattctaa 144769
to top
>gb|BC094145.1| Xenopus laevis cDNA clone MGC:114756 IMAGE:7011649, complete cds
          Length = 1436

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 95  accaacaacagctgaaccgt 114
           ||||||||||||||||||||
Sbjct: 476 accaacaacagctgaaccgt 457
to top
>gb|BT005431.1| Arabidopsis thaliana clone U50442 putative protein phosphatase 2C
           (At5g10740) mRNA, complete cds
          Length = 1096

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 ccacaggccatcacttgctagaat 341
           |||||| |||||||||||||||||
Sbjct: 702 ccacagtccatcacttgctagaat 679
to top
>gb|AC009062.8| Homo sapiens chromosome 16 clone RP11-298C15, complete sequence
          Length = 207345

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 368   cttcctcagccacgtgtggc 387
             ||||||||||||||||||||
Sbjct: 85980 cttcctcagccacgtgtggc 85999
to top
>gb|AY087522.1| Arabidopsis thaliana clone 36315 mRNA, complete sequence
          Length = 1479

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 ccacaggccatcacttgctagaat 341
           |||||| |||||||||||||||||
Sbjct: 895 ccacagtccatcacttgctagaat 872
to top
>dbj|AK117549.1| Arabidopsis thaliana At5g10740 mRNA for putative protein
           phosphatase 2C, complete cds, clone: RAFL17-20-B01
          Length = 1491

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 318 ccacaggccatcacttgctagaat 341
           |||||| |||||||||||||||||
Sbjct: 900 ccacagtccatcacttgctagaat 877
to top
>gb|AC005245.1|AC005245 Homo sapiens chromosome 17, clone hRPK.642_C_21, complete sequence
          Length = 172084

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     aacaacaatattctaaaaaa 35
              ||||||||||||||||||||
Sbjct: 163384 aacaacaatattctaaaaaa 163403
to top
>gb|L14570.1|HIV1CM237X Human immunodeficiency virus type 1 (CM237) envelope glycoprotein
            (env) gene, partial cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 65   ccaacaagaaaagattgaac 84
            ||||||||||||||||||||
Sbjct: 1819 ccaacaagaaaagattgaac 1838


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,668,783
Number of Sequences: 3902068
Number of extensions: 5668783
Number of successful extensions: 105791
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105590
Number of HSP's gapped (non-prelim): 196
length of query: 636
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 613
effective length of database: 17,143,297,704
effective search space: 10508841492552
effective search space used: 10508841492552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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