| Clone Name | rbags39b10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 398 aagtatctgtctctagaattcgattggcactctgcgagaaactatgtcaaactttagatg 457 |||||| |||||||||| || ||||||| ||| || ||||||| |||||||||||||| Sbjct: 5071781 aagtatttgtctctagatttggattggccctccacggcaaactatttcaaactttagatg 5071840
>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0453H10 Length = 133464 Score = 48.1 bits (24), Expect = 0.029 Identities = 51/60 (85%) Strand = Plus / Plus Query: 398 aagtatctgtctctagaattcgattggcactctgcgagaaactatgtcaaactttagatg 457 |||||| |||||||||| || ||||||| ||| || ||||||| |||||||||||||| Sbjct: 32279 aagtatttgtctctagatttggattggccctccacggcaaactatttcaaactttagatg 32338
>emb|AL392172.9| Human DNA sequence from clone RP11-452F19 on chromosome 1 Contains the 5' end of the gene for a novel protein (FLJ12806), the gene for a novel protein (FLJ32421), two novel genes, the 5' end of two variants of the DISP1 gene for dispatched homolog 1 (Drosophila) and a CpG island, complete sequence Length = 195849 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 322 atttaatcatgaaagcagttgc 343 |||||||||||||||||||||| Sbjct: 73767 atttaatcatgaaagcagttgc 73746
>gb|AC007098.4| Homo sapiens BAC clone RP11-443F16 from 2, complete sequence Length = 157650 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 9 acaataaaataaactgtgcata 30 |||||||||||||||||||||| Sbjct: 53689 acaataaaataaactgtgcata 53668
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 107 ttatttaaaaaagacaacata 127 ||||||||||||||||||||| Sbjct: 1244560 ttatttaaaaaagacaacata 1244540
>emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, complete sequence Length = 179437 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 tgcttaacaataaaataaact 23 ||||||||||||||||||||| Sbjct: 7682 tgcttaacaataaaataaact 7702
>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence Length = 192662 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gaataacttgagcaaattat 297 |||||||||||||||||||| Sbjct: 108977 gaataacttgagcaaattat 108958
>gb|DP000008.1| Bos taurus target 1 genomic scaffold Length = 2072671 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 actcactgtcactaataaaa 370 |||||||||||||||||||| Sbjct: 195548 actcactgtcactaataaaa 195567
>gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete sequence Length = 116833 Score = 40.1 bits (20), Expect = 7.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 108 tatttaaaaaagacaa-catatgtctga 134 |||||||||||||||| ||||||||||| Sbjct: 22854 tatttaaaaaagacaagcatatgtctga 22881
>emb|AL022146.1|HS780M13 Human DNA sequence from clone RP4-780M13 on chromosome 1q24-25 Contains the 5' end of the SELP gene for selectin P (granule membrane protein 140kDa, antigen CD62) and the 5' end of a variant of a novel gene (FLJ45155), complete sequence Length = 78025 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aataaaataaactgtgcata 30 |||||||||||||||||||| Sbjct: 77202 aataaaataaactgtgcata 77183
>gb|AF542391.1| Homo sapiens selectin P (granule membrane protein 140kDa, antigen CD62) (SELP) gene, complete cds Length = 44381 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 aataaaataaactgtgcata 30 |||||||||||||||||||| Sbjct: 38210 aataaaataaactgtgcata 38191
>emb|BX548246.17| Zebrafish DNA sequence from clone CH211-274P15 in linkage group 14, complete sequence Length = 155919 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 aataacttgagcaaattatggcag 302 |||||||||||||||| ||||||| Sbjct: 31143 aataacttgagcaaatgatggcag 31120
>emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in linkage group 24, complete sequence Length = 192113 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcttaacaataaaataaact 23 |||||||||||||||||||| Sbjct: 148545 gcttaacaataaaataaact 148564
>emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in linkage group 16, complete sequence Length = 159464 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 4 gcttaacaataaaataaact 23 |||||||||||||||||||| Sbjct: 75745 gcttaacaataaaataaact 75726
>emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 in linkage group 24, complete sequence Length = 202872 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 gcttaacaataaaataaact 23 |||||||||||||||||||| Sbjct: 105657 gcttaacaataaaataaact 105676
>gb|AC115627.4| Homo sapiens BAC clone RP11-707A18 from 4, complete sequence Length = 46960 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 cttatttaaaaaagacaaca 125 |||||||||||||||||||| Sbjct: 9405 cttatttaaaaaagacaaca 9386
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 457 gatgccaacaagtggacaactgcc 480 ||||||||||||||||| |||||| Sbjct: 16729150 gatgccaacaagtggactactgcc 16729173
>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete sequence Length = 197149 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 278 gaataacttgagcaaattat 297 |||||||||||||||||||| Sbjct: 22252 gaataacttgagcaaattat 22233
>gb|AC156365.3| Bos taurus clone RP42-18L9, complete sequence Length = 153415 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 351 actcactgtcactaataaaa 370 |||||||||||||||||||| Sbjct: 75057 actcactgtcactaataaaa 75076
>gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complete sequence Length = 163339 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 agaataaccacaaggtgccc 258 |||||||||||||||||||| Sbjct: 27201 agaataaccacaaggtgccc 27220
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 457 gatgccaacaagtggacaactgcc 480 ||||||||||||||||| |||||| Sbjct: 16682383 gatgccaacaagtggactactgcc 16682406
>emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0088J13 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 116974 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 457 gatgccaacaagtggacaactgcc 480 ||||||||||||||||| |||||| Sbjct: 56251 gatgccaacaagtggactactgcc 56228
>emb|AL831766.3| Mouse DNA sequence from clone RP23-209N3 on chromosome 2, complete sequence Length = 178227 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 cttatttaaaaaagacaaca 125 |||||||||||||||||||| Sbjct: 98469 cttatttaaaaaagacaaca 98488
>dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-664I21, complete sequence Length = 186971 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 gaagtatctgtctctagaat 416 |||||||||||||||||||| Sbjct: 74602 gaagtatctgtctctagaat 74621 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,782,878 Number of Sequences: 3902068 Number of extensions: 5782878 Number of successful extensions: 110146 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 110004 Number of HSP's gapped (non-prelim): 143 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)