ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags39b10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
2dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.029
3emb|AL392172.9| Human DNA sequence from clone RP11-452F19 on chr... 44 0.45
4gb|AC007098.4| Homo sapiens BAC clone RP11-443F16 from 2, comple... 44 0.45
5dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, comple... 42 1.8
6emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, co... 42 1.8
7gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, co... 40 7.0
8gb|DP000008.1| Bos taurus target 1 genomic scaffold 40 7.0
9gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete seq... 40 7.0
10emb|AL022146.1|HS780M13 Human DNA sequence from clone RP4-780M13... 40 7.0
11gb|AF542391.1| Homo sapiens selectin P (granule membrane protein... 40 7.0
12emb|BX548246.17| Zebrafish DNA sequence from clone CH211-274P15 ... 40 7.0
13emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in... 40 7.0
14emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in... 40 7.0
15emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 i... 40 7.0
16gb|AC115627.4| Homo sapiens BAC clone RP11-707A18 from 4, comple... 40 7.0
17dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
18gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosom... 40 7.0
19gb|AC156365.3| Bos taurus clone RP42-18L9, complete sequence 40 7.0
20gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complet... 40 7.0
21gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
22emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial se... 40 7.0
23emb|AL831766.3| Mouse DNA sequence from clone RP23-209N3 on chro... 40 7.0
24dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 7.0

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                           
Query: 398     aagtatctgtctctagaattcgattggcactctgcgagaaactatgtcaaactttagatg 457
               |||||| |||||||||| || ||||||| |||  ||  ||||||| ||||||||||||||
Sbjct: 5071781 aagtatttgtctctagatttggattggccctccacggcaaactatttcaaactttagatg 5071840



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>dbj|AP005785.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0453H10
          Length = 133464

 Score = 48.1 bits (24), Expect = 0.029
 Identities = 51/60 (85%)
 Strand = Plus / Plus

                                                                         
Query: 398   aagtatctgtctctagaattcgattggcactctgcgagaaactatgtcaaactttagatg 457
             |||||| |||||||||| || ||||||| |||  ||  ||||||| ||||||||||||||
Sbjct: 32279 aagtatttgtctctagatttggattggccctccacggcaaactatttcaaactttagatg 32338



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>emb|AL392172.9| Human DNA sequence from clone RP11-452F19 on chromosome 1 Contains the
             5' end of the gene for a novel protein (FLJ12806), the
             gene for a novel protein (FLJ32421), two novel genes, the
             5' end of two variants of the DISP1 gene for dispatched
             homolog 1 (Drosophila) and a CpG island, complete sequence
          Length = 195849

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 322   atttaatcatgaaagcagttgc 343
             ||||||||||||||||||||||
Sbjct: 73767 atttaatcatgaaagcagttgc 73746



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>gb|AC007098.4| Homo sapiens BAC clone RP11-443F16 from 2, complete sequence
          Length = 157650

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 9     acaataaaataaactgtgcata 30
             ||||||||||||||||||||||
Sbjct: 53689 acaataaaataaactgtgcata 53668



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>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome
          Length = 2685015

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 107     ttatttaaaaaagacaacata 127
               |||||||||||||||||||||
Sbjct: 1244560 ttatttaaaaaagacaacata 1244540



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>emb|AL928892.6| Zebrafish DNA sequence from clone DKEY-216E6, complete sequence
          Length = 179437

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 3    tgcttaacaataaaataaact 23
            |||||||||||||||||||||
Sbjct: 7682 tgcttaacaataaaataaact 7702



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>gb|AC134397.6| Mus musculus chromosome 13, clone RP23-265J12, complete sequence
          Length = 192662

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 278    gaataacttgagcaaattat 297
              ||||||||||||||||||||
Sbjct: 108977 gaataacttgagcaaattat 108958



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>gb|DP000008.1| Bos taurus target 1 genomic scaffold
          Length = 2072671

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 351    actcactgtcactaataaaa 370
              ||||||||||||||||||||
Sbjct: 195548 actcactgtcactaataaaa 195567



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>gb|AC122722.7| Medicago truncatula clone mth1-3f12, complete sequence
          Length = 116833

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 108   tatttaaaaaagacaa-catatgtctga 134
             |||||||||||||||| |||||||||||
Sbjct: 22854 tatttaaaaaagacaagcatatgtctga 22881



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>emb|AL022146.1|HS780M13 Human DNA sequence from clone RP4-780M13 on chromosome 1q24-25 Contains
             the 5' end of the SELP gene for selectin P (granule
             membrane protein 140kDa, antigen CD62) and the 5' end of a
             variant of a novel gene (FLJ45155), complete sequence
          Length = 78025

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aataaaataaactgtgcata 30
             ||||||||||||||||||||
Sbjct: 77202 aataaaataaactgtgcata 77183



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>gb|AF542391.1| Homo sapiens selectin P (granule membrane protein 140kDa, antigen CD62)
             (SELP) gene, complete cds
          Length = 44381

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    aataaaataaactgtgcata 30
             ||||||||||||||||||||
Sbjct: 38210 aataaaataaactgtgcata 38191



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>emb|BX548246.17| Zebrafish DNA sequence from clone CH211-274P15 in linkage group 14,
             complete sequence
          Length = 155919

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 279   aataacttgagcaaattatggcag 302
             |||||||||||||||| |||||||
Sbjct: 31143 aataacttgagcaaatgatggcag 31120



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>emb|BX649452.4| Zebrafish DNA sequence from clone DKEY-226L10 in linkage group 24,
              complete sequence
          Length = 192113

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      gcttaacaataaaataaact 23
              ||||||||||||||||||||
Sbjct: 148545 gcttaacaataaaataaact 148564



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>emb|BX511123.10| Zebrafish DNA sequence from clone DKEY-201I6 in linkage group 16,
             complete sequence
          Length = 159464

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     gcttaacaataaaataaact 23
             ||||||||||||||||||||
Sbjct: 75745 gcttaacaataaaataaact 75726



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>emb|BX248581.17| Zebrafish DNA sequence from clone CH211-208O6 in linkage group 24,
              complete sequence
          Length = 202872

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 4      gcttaacaataaaataaact 23
              ||||||||||||||||||||
Sbjct: 105657 gcttaacaataaaataaact 105676



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>gb|AC115627.4| Homo sapiens BAC clone RP11-707A18 from 4, complete sequence
          Length = 46960

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 106  cttatttaaaaaagacaaca 125
            ||||||||||||||||||||
Sbjct: 9405 cttatttaaaaaagacaaca 9386



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 457      gatgccaacaagtggacaactgcc 480
                ||||||||||||||||| ||||||
Sbjct: 16729150 gatgccaacaagtggactactgcc 16729173



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>gb|AC154460.2| Mus musculus BAC clone RP24-163G22 from chromosome 13, complete
             sequence
          Length = 197149

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   gaataacttgagcaaattat 297
             ||||||||||||||||||||
Sbjct: 22252 gaataacttgagcaaattat 22233



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>gb|AC156365.3| Bos taurus clone RP42-18L9, complete sequence
          Length = 153415

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 351   actcactgtcactaataaaa 370
             ||||||||||||||||||||
Sbjct: 75057 actcactgtcactaataaaa 75076



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>gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complete sequence
          Length = 163339

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   agaataaccacaaggtgccc 258
             ||||||||||||||||||||
Sbjct: 27201 agaataaccacaaggtgccc 27220



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 457      gatgccaacaagtggacaactgcc 480
                ||||||||||||||||| ||||||
Sbjct: 16682383 gatgccaacaagtggactactgcc 16682406



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>emb|AL935068.5|CNS08CCK Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0088J13
             of library OSJNBb from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 116974

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 457   gatgccaacaagtggacaactgcc 480
             ||||||||||||||||| ||||||
Sbjct: 56251 gatgccaacaagtggactactgcc 56228



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>emb|AL831766.3| Mouse DNA sequence from clone RP23-209N3 on chromosome 2, complete
             sequence
          Length = 178227

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   cttatttaaaaaagacaaca 125
             ||||||||||||||||||||
Sbjct: 98469 cttatttaaaaaagacaaca 98488



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>dbj|AP003501.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-664I21, complete
             sequence
          Length = 186971

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gaagtatctgtctctagaat 416
             ||||||||||||||||||||
Sbjct: 74602 gaagtatctgtctctagaat 74621


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,782,878
Number of Sequences: 3902068
Number of extensions: 5782878
Number of successful extensions: 110146
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 110004
Number of HSP's gapped (non-prelim): 143
length of query: 521
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 498
effective length of database: 17,143,297,704
effective search space: 8537362256592
effective search space used: 8537362256592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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