>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 22/80 (27%), Positives = 31/80 (38%)
 Frame = -2

Query: 471 PPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAESMHEVPELDHL 292
           PP S   P     SAA   +R S+   V+S  A +  +SGG               L + 
Sbjct: 33  PPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGF---------FSSLSNA 83

Query: 291 ISSELAESGLFLEEQQGGGA 232
           +    A +     EQ GGG+
Sbjct: 84  VKQTTAAAAATFSEQVGGGS 103

>PHAR2_RAT (P62025) Phosphatase and actin regulator 2|
          Length = 569

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = -2

Query: 483 AKGAPPASTT-----GPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAESM 319
           A  +P AS+T     GP   +   AG V      K +S  PAAA +    N V+ +  S+
Sbjct: 165 ASSSPSASSTSSHPRGPKESLTGKAGAVGTTRGKKKISKQPAAAASRLSPNTVTSETSSL 224

>WRK22_ARATH (O04609) WRKY transcription factor 22 (WRKY DNA-binding protein 22)|
          Length = 298

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 15/91 (16%)
 Frame = -2

Query: 435 NSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAESMHEVPELDHLISSEL-AESGLF 259
           NS AG  ++  S +  S +P   +AT   +PV+   E +  +P  DHL   +L  E  L 
Sbjct: 192 NSLAGSTRQKPSDQQTSKSPTTTIATYSSSPVTSADEFV--LPVEDHLAVGDLDGEEDLL 249

Query: 258 --------------LEEQQGGGAYSWNM*PA 208
                         LEE   G ++S N  PA
Sbjct: 250 SLSDTVVSDDFFDGLEEFAAGDSFSGNSAPA 280

>Y215_ADE02 (P03291) Hypothetical protein F-215|
          Length = 215

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 3/88 (3%)
 Frame = -3

Query: 449 PAI*STAQPAWSNDAAVSSR*AATRXXXXXLPVETR*VPRRSPCTRCPSWTISSAANSRR 270
           PA  +T+ P WS   A  SR   +       P++T     R  C R PS T     ++  
Sbjct: 25  PASPTTSPPPWSEPDAEISRRKRSSSSWPKSPIKTTQETCRRFCARPPSTTPKLILSNSL 84

Query: 269 AGCSW---RSSREAARTRGTCDPRTAKP 195
           +G S     SSR  AR R +    +  P
Sbjct: 85  SGSSSPGPSSSRRGARFRRSTAASSRSP 112

>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 21/108 (19%)
 Frame = -2

Query: 492 SGAAKGAPPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAESMHE 313
           +G    APP  +  P   I S+       +   S S++P    AT G  PV P A   H 
Sbjct: 615 AGDRNPAPPVGSASPQLQIKSSC-KENPFNRKPSPSASPTVRKATKGAKPVRPPAPG-HG 672

Query: 312 VP------ELDHLISSE---------------LAESGLFLEEQQGGGA 232
            P      + D  I  E               L  SG+ LEE+  GGA
Sbjct: 673 FPLIKRKVQADQYIPEEDIYGEMDNIERQLDALEHSGVLLEEKLRGGA 720

>Y24K_STRGR (P12752) Hypothetical 24.7 kDa protein in photolyase 5'region|
          Length = 238

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -3

Query: 323 PCTRC--PSWTISSAANSRRAGCSWRSSREAARTRGTCDP 210
           PCT C  P+ T SSA        +WR++R A R  G+C P
Sbjct: 2   PCTHCRTPNGTSSSA--------TWRTARPAPRRCGSCRP 33

>PTPRJ_HUMAN (Q12913) Receptor-type tyrosine-protein phosphatase eta precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase eta)
           (R-PTP-eta) (HPTP eta) (Protein-tyrosine phosphatase
           receptor type J) (Density-enhanced phosphatase 1)
           (DEP-1) (CD148 antigen)
          Length = 1337

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 410 RWTMPAALLIRLLGPVVLAGGAPFAAP 490
           RW +P  LL+  LG ++ AGG P   P
Sbjct: 18  RWALPLLLLLLRLGQILCAGGTPSPIP 44

>AGO2_DROME (Q9VUQ5) Argonaute 2 protein|
          Length = 1214

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = -1

Query: 490 WSREGRPSSEYDGAQQSNQQRSRHGPTMQQFQVGEQQPGCCCGYFRWKPGESQGGVHARG 311
           W+++G+      G Q  +    +  P  QQ    + + G   GY +  PG+ QGG H +G
Sbjct: 113 WTKQGQQGGHQQGRQGQDGGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGG-HQQG 171

Query: 310 ARAGP-SHQQR 281
            +     +QQR
Sbjct: 172 RQGQEGGYQQR 182



 Score = 29.6 bits (65), Expect = 5.0
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
 Frame = -1

Query: 475 RPSSEYDGAQQSNQQRSRHG----PTMQQFQVGEQQ--PGCCCGYFRWKPGESQGGVHAR 314
           RPS +  G  Q  +Q    G    P  QQ Q G QQ   G   GY +  PG+ QGG H +
Sbjct: 228 RPSGQQQGGHQQGRQGQEGGYQQRPPGQQ-QGGHQQGRQGQEGGYQQRPPGQQQGG-HEQ 285

Query: 313 GARAGP-SHQQR 281
           G +     +QQR
Sbjct: 286 GRQGQEGGYQQR 297

>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/80 (26%), Positives = 30/80 (37%)
 Frame = -2

Query: 471 PPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAESMHEVPELDHL 292
           PP S   P     SA    +R S+   V+S  A +  +SGG               L + 
Sbjct: 33  PPPSAASPGATPGSATASAERASTAAPVASPAAPSPGSSGGGGF---------FSSLSNA 83

Query: 291 ISSELAESGLFLEEQQGGGA 232
           +    A +     EQ GGG+
Sbjct: 84  VKQTTAAAAATFSEQVGGGS 103

>MG101_DEBHA (Q6BN05) Mitochondrial genome maintenance protein MGM101,|
           mitochondrial precursor
          Length = 275

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 465 ASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVS 337
           A+T+ P  ++N+ +      S+ KS S +PA A +   G+P++
Sbjct: 60  ATTSSPKPILNNESESSSSSSTIKSFSDSPAIASSPEVGSPIN 102

>ISPE_PROMA (Q7VCH6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC|
           2.7.1.148) (CMK)
           (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase)
          Length = 319

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 468 PASTTGPSNLINSAAGMVQRCSSFKSVSS 382
           P  +TG  NLI  AA ++Q CSS K+V +
Sbjct: 69  PNLSTGDDNLILKAAQLIQTCSSDKNVGA 97

>MYSP2_DROME (P35416) Paramyosin, short form (Miniparamyosin)|
          Length = 640

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 187 KTTGLAVRGSHVPRVRAASLLLLQEQPALREFAADEMVQL 306
           K  GL V+  H+P V    L   +   A+R++ ADE+V+L
Sbjct: 40  KAKGLEVKKPHLPWVSERGLKQYRPSNAVRQYNADEIVRL 79

>CSW_DROVI (Q24708) Tyrosine-protein phosphatase corkscrew (EC 3.1.3.48)|
           (Fragment)
          Length = 764

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = -2

Query: 495 NSGAAKGAPPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGN 346
           N  AAK  PP    G SN  NS+      C+S  S S+     V +S  N
Sbjct: 596 NKHAAKLQPPLPPLGASNNNNSSGNSGSYCNSSSSTSTAQHNGVVSSSNN 645

>SELB_HUMAN (P57772) Selenocysteine-specific elongation factor (Elongation|
           factor sec) (Eukaryotic elongation factor,
           selenocysteine-tRNA-specific)
          Length = 596

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 378 PAAAVATSGGNPVSPKAESMHEVPELDHLISSELA 274
           P   VA   G P +P+ E+   +PEL  L++S+++
Sbjct: 180 PIIPVAAKPGGPEAPETEAPQGIPELIELLTSQIS 214

>BAZ2B_CHICK (Q9DE13) Bromodomain adjacent to zinc finger domain 2B (Extracellular|
            matrix protein F22)
          Length = 2130

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = -2

Query: 495  NSGAAKGAPPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGG----NPVSPKA 328
            N GAA G  P+      N + S    V + SS KS SSN  +  A+  G    +P+ P  
Sbjct: 1413 NGGAANGCTPSYQNTSQNSLCSLQPSVSQSSSEKSDSSNLFSPTASGTGKFYSSPLIPSD 1472

Query: 327  ESMHEVPE 304
            + +  + E
Sbjct: 1473 QLLKTLTE 1480

>VLPA_MYCHR (P29228) Variant surface antigen A precursor (VlpA prolipoprotein)|
          Length = 176

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/60 (28%), Positives = 33/60 (55%)
 Frame = -2

Query: 501 DMNSGAAKGAPPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAES 322
           + NSG++ G+   +TT   +  NS +GM    +S K+ ++  + A  T+ GN  + ++ S
Sbjct: 92  ESNSGSSTGSQAGTTTNTGSGSNSESGM----NSEKTENTQQSEAPGTNTGNKTTSESNS 147

>TAF10_MOUSE (Q8K0H5) Transcription initiation factor TFIID subunit 10|
           (Transcription initiation factor TFIID 30 kDa subunit)
           (TAF(II)30) (TAFII-30) (mTAFII30)
          Length = 218

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = -2

Query: 483 AKGAPPASTTGPSNLINSAAGM-----VQRCSSFKSVSSNPAAAVATSGGNPVSPKA 328
           A  A  AS  GP+ L+++ A +      +  +S    +  P A VAT+G  PV+ +A
Sbjct: 12  AATACAASVAGPAPLVSAPAALPTSTAAESKASPAGTAGGPVAGVATAGTGPVAARA 68

>MRG15_DROME (Q9Y0I1) Protein MRG15|
          Length = 424

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
 Frame = -2

Query: 489 GAAKGAPPASTTGPSNLINSAAGMVQRCSSFKSVSS-----------NPAAAVATSGGNP 343
           G+   A    TT  ++  NS      R S+  + S+           +PAAA  T    P
Sbjct: 143 GSKSEAGSTGTTTTNSTANSTTSRAHRKSTQSTPSTARPGTPSDKKEDPAAAETTEEEGP 202

Query: 342 VSPKAESMHEVPELDHLISSELAESGL 262
           V+PK + M E  +   L  S++AE  L
Sbjct: 203 VAPKKKRMSE--QRPSLTGSDVAEKPL 227

>PHLPP_RAT (Q9WTR8) PH domain leucine-rich repeat protein phosphatase (EC|
           3.1.3.16) (Pleckstrin homology domain-containing family
           E protein 1) (Suprachiasmatic nucleus circadian
           oscillatory protein)
          Length = 1696

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 486 AAKGAPPASTTG--PSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSPKAES 322
           AA GA P +  G   ++L+     + +  S+  S SS+P++A + +GG P S  A +
Sbjct: 83  AAGGAAPVTAAGGGANSLLLRRGRLKRNLSAAASSSSSPSSASSAAGGLPASCSASA 139

>SOX21_CHICK (Q9W7R5) Transcription factor SOX-21|
          Length = 280

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 510 EAHDMNSGAAKGAPPASTTG-PSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVS 337
           +A  ++ GAA G  P S  G P     +AA    R    +S ++  AAA A + G P S
Sbjct: 113 KAAALHGGAAGGLGPDSLLGNPEKAAAAAAAAAARVFFPQSAAAAAAAAAAAAAGGPYS 171

>LSD1_MOUSE (Q6ZQ88) Lysine-specific histone demethylase 1 (EC 1.-.-.-) (Amine|
           oxidase flavin-containing domain protein 2) (AOF2
           protein) (BRAF35-HDAC complex protein BHC110)
          Length = 853

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
 Frame = -2

Query: 492 SGAAKGAPPASTTGPSNLINSAAG-------MVQRCSSFKSVSSNPAA----AVATSGGN 346
           +G+   APPA  TGP+++   AAG          R S    ++  P +    A  T+G  
Sbjct: 34  NGSEVAAPPAGLTGPTDMATGAAGERTPRKKEPPRASPPGGLAEPPGSAGPQAGPTAGPG 93

Query: 345 PVSPKAESMHEVPE 304
             +P    + E PE
Sbjct: 94  SATPMETGIAETPE 107

>EVX2_MOUSE (P49749) Homeobox even-skipped homolog protein 2 (EVX-2)|
          Length = 475

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 495 NSGAAKGAPPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSG 352
           +S AA GAPP+ ++ P + ++        C S +S ++  AAA A  G
Sbjct: 374 SSAAAAGAPPSGSSAPCSCLS--------CHSSQSAAAAAAAAAAALG 413

>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = -2

Query: 474 APPASTTGPSNLINSAAGMVQRCSSFKSVSSNPAAAVATSGGNPVSP 334
           +PP STT P    +       + SS  S +++P  ++A   G+PVSP
Sbjct: 173 SPPGSTTPPGGAHSP------KSSSAVSPATSPPGSMAPKSGSPVSP 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,117,523
Number of Sequences: 219361
Number of extensions: 1161733
Number of successful extensions: 3572
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3564
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3754426130
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)