ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags38m07 |
|---|---|
| Clone Library Name | barley_pub |
>VPS25_XENLA (Q6AX45) Vacuolar protein sorting protein 25| Length = 174 Score = 110 bits (276), Expect = 3e-24 Identities = 61/151 (40%), Positives = 91/151 (60%), Gaps = 4/151 (2%) Frame = -3 Query: 654 KSKCSYGKELILDYCRSQKMYIISLEE--DFPLFSNQKIERSLSYEAKEVFLAALVSEGR 481 + + S L+L YCR K+Y ++L E + PLF+N+KI+R LS E+ +V L L +G Sbjct: 25 QKQLSAWSSLVLSYCRQNKLYTMNLMEIQESPLFNNKKIQRKLSLESVQVVLEELRKKGN 84 Query: 480 AEWIDKSHKKCLILWLRIQDWANYILDFVKENGL--EVTTIEDLRSGIETHGTELAGIDR 307 EWIDK+ + LI+W R +W I +V +NG+ V T+ +L SG +T G E G+D Sbjct: 85 LEWIDKNKSRFLIMWRRPDEWGKVIYQWVSKNGMTNSVFTLYELISGDDTEGEEFHGLDE 144 Query: 306 GVLMRALRLLEQKGKAVIFKGTSADDEGVKF 214 +L+R+L L+Q+ KA I T + GVKF Sbjct: 145 AMLLRSLEALQQEHKAEII--TLNESRGVKF 173
>VPS25_BRARE (Q6NWF4) Vacuolar protein sorting protein 25| Length = 174 Score = 108 bits (269), Expect = 2e-23 Identities = 57/142 (40%), Positives = 89/142 (62%), Gaps = 4/142 (2%) Frame = -3 Query: 627 LILDYCRSQKMYIISLEE--DFPLFSNQKIERSLSYEAKEVFLAALVSEGRAEWIDKSHK 454 L+L YCR +K+Y + + E + P+F+N+KIER LS EA +V L +G EW+DK+ Sbjct: 34 LVLSYCRHRKLYTLDVLEAQESPVFNNKKIERKLSVEAIQVVFEELRKKGNLEWLDKNKS 93 Query: 453 KCLILWLRIQDWANYILDFVKENGL--EVTTIEDLRSGIETHGTELAGIDRGVLMRALRL 280 +CLI+W R ++W I +V +NG+ V T+ +L +G +T E G++ +L+R+L+ Sbjct: 94 RCLIMWRRPEEWGKLIYQWVSKNGMVNSVFTLYELANGDDTEKEEFHGLEDWMLLRSLQA 153 Query: 279 LEQKGKAVIFKGTSADDEGVKF 214 L+ GKA I T D +GVKF Sbjct: 154 LQTDGKAEII--TMDDGKGVKF 173
>VPS25_MOUSE (Q9CQ80) Vacuolar protein sorting protein 25| Length = 176 Score = 94.7 bits (234), Expect = 2e-19 Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Frame = -3 Query: 627 LILDYCRSQKMYIISLEE--DFPLFSNQKIERSLSYEAKEVFLAALVSEGRAEWIDKSHK 454 L+L +CR K +++ E + PLF+N K++R L E+ ++ L L +G EW+DK+ Sbjct: 36 LVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLEWLDKNKS 95 Query: 453 KCLILWLRIQDWANYILDFVKENGL--EVTTIEDLRSGIETHGTELAGIDRGVLMRALRL 280 LI+W R ++W I +V +G V T+ +L SG +T E G+D L+RAL+ Sbjct: 96 SFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTSGEDTEDEEFHGLDEATLLRALQA 155 Query: 279 LEQKGKAVIFKGTSADDEGVKF 214 L+Q+ KA I T +D GVKF Sbjct: 156 LQQEHKAEII--TVSDGRGVKF 175
>VPS25_HUMAN (Q9BRG1) Vacuolar protein sorting protein 25 (hVps25)| (ELL-associated protein of 20 kDa) (Dermal papilla-derived protein 9) Length = 176 Score = 94.7 bits (234), Expect = 2e-19 Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Frame = -3 Query: 627 LILDYCRSQKMYIISLEE--DFPLFSNQKIERSLSYEAKEVFLAALVSEGRAEWIDKSHK 454 L+L +CR K +++ E + PLF+N K++R L E+ ++ L L +G EW+DKS Sbjct: 36 LVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLEWLDKSKS 95 Query: 453 KCLILWLRIQDWANYILDFVKENGL--EVTTIEDLRSGIETHGTELAGIDRGVLMRALRL 280 LI+W R ++W I +V +G V T+ +L +G +T E G+D L+RAL+ Sbjct: 96 SFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQA 155 Query: 279 LEQKGKAVIFKGTSADDEGVKF 214 L+Q+ KA I T +D GVKF Sbjct: 156 LQQEHKAEII--TVSDGRGVKF 175
>VPS25_RAT (P0C0A1) Vacuolar protein sorting protein 25 (ELL-associated| protein of 20 kDa) Length = 176 Score = 94.4 bits (233), Expect = 3e-19 Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 4/142 (2%) Frame = -3 Query: 627 LILDYCRSQKMYIISLEE--DFPLFSNQKIERSLSYEAKEVFLAALVSEGRAEWIDKSHK 454 L+L +CR K +++ E + PLF+N K++R L E+ ++ L L +G EW+DK+ Sbjct: 36 LVLSFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQIVLEELRKKGNLEWLDKNKS 95 Query: 453 KCLILWLRIQDWANYILDFVKENGL--EVTTIEDLRSGIETHGTELAGIDRGVLMRALRL 280 LI+W R ++W I +V +G V T+ +L SG +T E G+D L+RAL+ Sbjct: 96 SFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTSGEDTEEEEFHGLDEATLLRALQA 155 Query: 279 LEQKGKAVIFKGTSADDEGVKF 214 L+Q+ KA I T +D GVKF Sbjct: 156 LQQEHKAEII--TVSDGRGVKF 175
>VPS25_BOVIN (Q5E9A6) Vacuolar protein sorting protein 25| Length = 176 Score = 94.0 bits (232), Expect = 4e-19 Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 4/142 (2%) Frame = -3 Query: 627 LILDYCRSQKMYIISLEE--DFPLFSNQKIERSLSYEAKEVFLAALVSEGRAEWIDKSHK 454 L+L +CR K +++ E + PLF+N K++R L E+ +V L L +G EW+DK+ Sbjct: 36 LVLTFCRLHKQSSMTVMEAQESPLFNNVKLQRKLPVESIQVVLEELRKKGNLEWLDKNKS 95 Query: 453 KCLILWLRIQDWANYILDFVKENGL--EVTTIEDLRSGIETHGTELAGIDRGVLMRALRL 280 LI+W R ++W I +V ++G V T+ +L +G +T E G+D L+RAL+ Sbjct: 96 SFLIMWRRPEEWGKLIYQWVSKSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQA 155 Query: 279 LEQKGKAVIFKGTSADDEGVKF 214 L+Q+ KA I T +D GVKF Sbjct: 156 LQQEHKAEII--TVSDGRGVKF 175
>VPS25_YEAST (P47142) Vacuolar protein sorting protein 25| Length = 202 Score = 48.9 bits (115), Expect = 1e-05 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 31/159 (19%) Frame = -3 Query: 630 ELILDYCRSQKMYIISLEEDF---------------------PLFSNQKIERSLSYEAKE 514 ++I YC+++K++ +S++ LF+N+ I+RS+S + Sbjct: 32 DIISQYCKTKKIWYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFID 91 Query: 513 VFLAALVSEGRAEWIDKSHKKC--------LILWLRIQDWANYILDFVKENGL--EVTTI 364 + + EG+ ID+S ++ ILW + WA+ IL + +++G +V T+ Sbjct: 92 EIWSQMTKEGKCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKLNQVITL 151 Query: 363 EDLRSGIETHGTELAGIDRGVLMRALRLLEQKGKAVIFK 247 +L G ET E + +L L+ L + +A + K Sbjct: 152 YELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLK 190
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 35.4 bits (80), Expect = 0.15 Identities = 30/110 (27%), Positives = 43/110 (39%) Frame = +2 Query: 80 HTEVSMMPINTPEGCDRCTGKKGCITFKDTDQGCSSVSANKV*AENFTPSSSADVPLKIT 259 H+ + + + G D CT G + FK+ D G N V EN T + + L Sbjct: 3124 HSSLHGLHLYKESGLDNCTRISGFLAFKNFDYGAMLHVENSVEIENITLVDNT-IGLLAV 3182 Query: 260 AFPFCSNSLKARMRTPRSIPASSVPCVSIPERRSSIVVTSNPFSFTKSNI 409 + F S P +SV V I R S IV TS+ F + + Sbjct: 3183 VYVF-------------SAPQNSVKKVQIVLRNSVIVATSSSFDCIQDKV 3219
>MTC2_YEAST (P53185) Protein MTC2| Length = 909 Score = 34.3 bits (77), Expect = 0.34 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 1/87 (1%) Frame = +2 Query: 152 ITFKDTDQGC-SSVSANKV*AENFTPSSSADVPLKITAFPFCSNSLKARMRTPRSIPASS 328 IT T C SS SA + ENFT S DV + P S + + + P +S Sbjct: 706 ITSASTSDNCTSSQSAAQKNIENFTTLSKYDVYSSTSFIPSTSKNTNTNVSKQQQQPQNS 765 Query: 329 VPCVSIPERRSSIVVTSNPFSFTKSNI 409 PC +SN F F KS++ Sbjct: 766 TPC------------SSNRFLFNKSSL 780
>HOX7P_XENLA (P35993) Homeobox protein XHOX-7.1' (Fragment)| Length = 291 Score = 30.8 bits (68), Expect = 3.7 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +2 Query: 221 TPSSSADVPLKITAFPFCSNSLKARMRTPRSIPAS----SVPCVSIPERRSSIVVTSNP 385 T S S D +KI++ PF +L A R P+ P S S S P R + + +P Sbjct: 50 TLSPSEDHKIKISSLPFSVEALMADKRVPKEAPPSRAVDSSAATSTPNRHLHLGIRDSP 108
>AEPE_BPA18 (Q37976) L-alanyl-D-glutamate peptidase (EC 3.4.-.-)| Length = 281 Score = 30.8 bits (68), Expect = 3.7 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 8/78 (10%) Frame = -3 Query: 417 ANYILDFVKENGLEVTTIEDLRSGIETHGTELAGIDRGV--LMRALRLLEQKGKAVIFKG 244 A +LD+ + NG+EV E +R T + A ++ G MR+ L+ Q V+ KG Sbjct: 24 ARKLLDWSESNGIEVLIYETIR----TKEQQAANVNSGASQTMRSYHLVGQALDFVMAKG 79 Query: 243 TSAD------DEGVKFSA 208 + D D+G KF A Sbjct: 80 KTVDWGAYRSDKGKKFVA 97
>YN94_YEAST (P53751) Putative 125.2 kDa membrane glycoprotein in BIO3-HXT17| intergenic region Length = 1116 Score = 30.4 bits (67), Expect = 4.9 Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Frame = +2 Query: 299 RTPRSIPASSVPCVSIPERRSS---IVVTSNPFSF 394 +TP I +PC IPE SS IV T N F F Sbjct: 247 KTPMKIEPVDIPCDEIPEEGSSDREIVTTENKFDF 281
>KTHY_THEVO (Q97CC8) Probable thymidylate kinase (EC 2.7.4.9) (dTMP kinase)| Length = 190 Score = 30.4 bits (67), Expect = 4.9 Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = -3 Query: 621 LDYCRSQKMYIISLEEDFPLFSNQKIERSLSYEAKEVFLAALVSEGRA-EWIDKSHKKCL 445 LD + QK L E F + S++ I S +YE K AAL SE +A EW+D C+ Sbjct: 57 LDRYKHQKEIRKKLNEGFVVISDRYIRSSYAYEMKGA-AAALGSEEKAKEWMD-----CV 110 Query: 444 ILWLRIQDWANYILDFVKENGLEVTTIEDLRSGIETH 334 + I+ N ++ + GL+ + R+G TH Sbjct: 111 SNIITIRPDINILVQVDVQVGLDRIS---KRNGTITH 144
>YJW2_YEAST (P40890) Putative membrane glycoprotein YJL222W precursor| Length = 1549 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +2 Query: 293 RMRTPRSIPASSVPCVSIPERRSS---IVVTSNPFSF 394 + +TP I + +PC IP+ SS IV T N F F Sbjct: 678 KCKTPMKIESVDIPCDEIPKEGSSDKEIVTTENKFDF 714
>YIR3_YEAST (P40438) Putative membrane glycoprotein YIL173W precursor| Length = 1549 Score = 30.0 bits (66), Expect = 6.3 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = +2 Query: 293 RMRTPRSIPASSVPCVSIPERRSS---IVVTSNPFSF 394 + +TP I + +PC IP+ SS IV T N F F Sbjct: 678 KCKTPMKIESVDIPCDEIPKEGSSDKEIVTTENKFDF 714
>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin| binding protein I) (Protein phosphatase 1 regulatory subunit 9A) Length = 1098 Score = 30.0 bits (66), Expect = 6.3 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 3/82 (3%) Frame = -3 Query: 492 SEGRAEWIDKSHKKCLILWLRIQDWANYILDFVKENGLEVTTIEDLRSGIETHGTELAGI 313 ++ + + ++K + K L I+D+ LDF+K E IEDL + H E+ G+ Sbjct: 753 TQSQYQALEKKYNKAKKL---IKDFQQKELDFIKRQEAERKKIEDLE---KAHLVEVQGL 806 Query: 312 D---RGVLMRALRLLEQKGKAV 256 R + RLL+Q G V Sbjct: 807 QVRIRDLEAEVFRLLKQNGTQV 828 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,690,838 Number of Sequences: 219361 Number of extensions: 1641094 Number of successful extensions: 4498 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4389 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4485 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
