ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags38m07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069050.1| Oryza sativa (japonica cultivar-group) cDNA clon... 210 4e-51
2dbj|AK058491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 192 1e-45
3gb|AY109411.1| Zea mays CL25406_3 mRNA sequence 151 3e-33
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
5dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
6dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic D... 129 1e-26
7ref|NM_192451.1| Oryza sativa (japonica cultivar-group), predic... 98 4e-17
8ref|NM_202841.1| Arabidopsis thaliana unknown protein AT4G19003 ... 54 6e-04
9ref|NM_148354.2| Arabidopsis thaliana unknown protein AT4G19003 ... 54 6e-04
10gb|AY093752.1| Arabidopsis thaliana At4g19004/At4g19004 mRNA, co... 54 6e-04
11gb|AY065055.1| Arabidopsis thaliana unknown protein mRNA, comple... 54 6e-04
12gb|AC167523.3| Loxodonta africana clone VMRC15-427D17, complete ... 44 0.57
13gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, comple... 44 0.57
14gb|AC145918.3| Pan troglodytes BAC clone RP43-9J6 from 7, comple... 44 0.57
15gb|AC090827.11| Homo sapiens chromosome 8, clone CTD-2594K21, co... 44 0.57
16gb|AC087370.26| Homo sapiens chromosome 8, clone RP11-533K17, co... 44 0.57
17dbj|AP004582.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 44 0.57
18gb|AC150653.5| Bos taurus BAC CH240-226L9 (Children's Hospital ... 42 2.3
19gb|AC150858.4| Bos taurus BAC CH240-431L22 (Children's Hospital... 42 2.3
20gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome... 42 2.3
21emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on ch... 42 2.3
22gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, compl... 42 2.3
23emb|AL663051.15| Mouse DNA sequence from clone RP23-450J13 on ch... 42 2.3
24gb|AC112169.2| Homo sapiens chromosome 5 clone CTD-2016H11, comp... 42 2.3
25gb|AC016743.10| Homo sapiens BAC clone RP11-475H17 from 2, compl... 42 2.3
26gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21... 42 2.3
27emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chro... 42 2.3
28emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chr... 42 2.3
29emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chro... 42 2.3
30gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone... 42 2.3
31gb|AC153633.10| Mus musculus 6 BAC RP23-13K24 (Roswell Park Canc... 40 9.0
32gb|AC131694.4| Mus musculus BAC clone RP23-393L24 from chromosom... 40 9.0
33emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 i... 40 9.0
34gb|AC122845.4| Mus musculus BAC clone RP23-155G2 from 1, complet... 40 9.0
35emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete ... 40 9.0
36emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373 40 9.0
37gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, compl... 40 9.0
38emb|AL645903.8| Mouse DNA sequence from clone RP23-179M4 on chro... 40 9.0
39emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 i... 40 9.0
40gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, comp... 40 9.0
41gb|AC108027.5| Homo sapiens BAC clone RP11-64C8 from 4, complete... 40 9.0
42gb|AC007363.3| Homo sapiens BAC clone RP11-294L11 from 2, comple... 40 9.0
43gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, compl... 40 9.0
44gb|AC104512.11| Drosophila melanogaster BAC RP98-39C15 (Roswell... 40 9.0
45gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 ... 40 9.0
46dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.0
47gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complet... 40 9.0
48dbj|AP004938.1| Lotus japonicus genomic DNA, chromosome 5, clone... 40 9.0
49gb|AC153888.3| Mus musculus 6 BAC RP23-428L22 (Roswell Park Canc... 40 9.0
50dbj|AP001538.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.0 
>dbj|AK069050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003I21, full
           insert sequence
          Length = 1011

 Score =  210 bits (106), Expect = 4e-51
 Identities = 346/425 (81%), Gaps = 7/425 (1%)
 Strand = Plus / Minus

                                                                       
Query: 237 ctgacgtgcccttaaagataactgcctttcccttctgttccaacagcctcaaagctcgca 296
           |||| ||||||||||| ||  |||  || |||||||||||||  | | ||||||| | ||
Sbjct: 685 ctgaagtgcccttaaaaatcgctgttttgcccttctgttccagtaacttcaaagccctca 626

                                                                       
Query: 297 tgaggacaccacgatcaattcccgcaagttcggtcccatgtgtttcaattccagagcgta 356
           |||| |||||||| || ||||| |||||||| | |||| |||||||||||||| | ||||
Sbjct: 625 tgagaacaccacggtccattcctgcaagttcagacccacgtgtttcaattccataacgta 566

                                                                       
Query: 357 gatcttcaattgttgttac------ttccaacccattttcctttacgaagtctaatatat 410
             |||||||  ||  ||||      ||||| |||||| |||||||| || | |||||| |
Sbjct: 565 tttcttcaacagtcattacactatcttccagcccattatcctttacaaaatttaatatgt 506

                                                                       
Query: 411 agttagcccaatcttgaattcgcagccaaagaatgagacacttcttgtgacttttgtcaa 470
           |||||||||||||||| || |||| |||||||||||| |||| ||| |||| |||||| |
Sbjct: 505 agttagcccaatcttgtatccgcaaccaaagaatgaggcactgcttatgacctttgtcca 446

                                                                       
Query: 471 tccactctgcgcgcccttcactaacaagagctgcaaggaacacttcctttgcttcataac 530
           |||| ||||| || ||||||  ||||||||| |||||||| || ||||||||||||   |
Sbjct: 445 tccattctgcacgtccttcataaacaagagcagcaaggaatacgtcctttgcttcacggc 386

                                                                       
Query: 531 ttagagatctctcaatcttttgattggaaaacaacggaaaatcttcttccagggagatta 590
           | ||||||||||| |||| | ||||||| ||||| ||   ||||||||| ||||||||||
Sbjct: 385 taagagatctctcgatctatggattggagaacaatggggcatcttcttctagggagatta 326

                                                                       
Query: 591 tatacatcttttgacttctacagtaatcaagtatcagctcttttccatagctgcacttgc 650
           || | | ||||||||||| ||| | |||||||||||| || |||||| |||||||| |||
Sbjct: 325 tagatagcttttgacttccacaatcatcaagtatcagatc-tttccacagctgcacgtgc 267

                
Query: 651 ttttc 655
           |||||
Sbjct: 266 ttttc 262
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>dbj|AK058491.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-E03, full
           insert sequence
          Length = 964

 Score =  192 bits (97), Expect = 1e-45
 Identities = 170/193 (88%), Gaps = 1/193 (0%)
 Strand = Plus / Minus

                                                                       
Query: 463 tttgtcaatccactctgcgcgcccttcactaacaagagctgcaaggaacacttcctttgc 522
           |||||| ||||| ||||| || ||||||  ||||||||| |||||||| |||||||||||
Sbjct: 551 tttgtccatccattctgcacgtccttcataaacaagagcagcaaggaatacttcctttgc 492

                                                                       
Query: 523 ttcataacttagagatctctcaatcttttgattggaaaacaacggaaaatcttcttccag 582
           |||||  || ||||||||||| |||||| ||||||| ||||| || ||||||||||| ||
Sbjct: 491 ttcatggctaagagatctctcgatctttggattggagaacaatgggaaatcttcttctag 432

                                                                       
Query: 583 ggagattatatacatcttttgacttctacagtaatcaagtatcagctcttttccatagct 642
           |||||||||||| | ||||||||||||||| |||||||||||||| || |||||| ||||
Sbjct: 431 ggagattatatatagcttttgacttctacaataatcaagtatcagatc-tttccacagct 373

                        
Query: 643 gcacttgcttttc 655
           |||||||||||||
Sbjct: 372 gcacttgcttttc 360



 Score =  105 bits (53), Expect = 2e-19
 Identities = 116/137 (84%)
 Strand = Plus / Minus

                                                                       
Query: 212 gaaaatttcacgccttcatcgtctgctgacgtgcccttaaagataactgcctttcccttc 271
           |||||||| || |||||||| || ||||| ||||||||||| ||  |||| || ||||||
Sbjct: 743 gaaaattttacaccttcatcatcagctgaagtgcccttaaaaatcgctgctttgcccttc 684

                                                                       
Query: 272 tgttccaacagcctcaaagctcgcatgaggacaccacgatcaattcccgcaagttcggtc 331
           |||||||  | | ||||||| | |||||| |||||||| |||||||| |||||||| |||
Sbjct: 683 tgttccagtaacttcaaagccctcatgagaacaccacggtcaattccggcaagttcagtc 624

                            
Query: 332 ccatgtgtttcaattcc 348
           ||| |||||||||||||
Sbjct: 623 ccacgtgtttcaattcc 607
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>gb|AY109411.1| Zea mays CL25406_3 mRNA sequence
          Length = 1037

 Score =  151 bits (76), Expect = 3e-33
 Identities = 163/192 (84%)
 Strand = Plus / Plus

                                                                       
Query: 336 gtgtttcaattccagagcgtagatcttcaattgttgttacttccaacccattttccttta 395
           |||| ||||||||||||||||  |||||||| ||  |||||||||||||||| |||||||
Sbjct: 562 gtgtatcaattccagagcgtatttcttcaatagtcattacttccaacccattatccttta 621

                                                                       
Query: 396 cgaagtctaatatatagttagcccaatcttgaattcgcagccaaagaatgagacacttct 455
           | ||||  |||||  | || |||||||| || || |  ||||||||||| || |||||||
Sbjct: 622 caaagttaaatatgaaattggcccaatcctgtatccttagccaaagaattaggcacttct 681

                                                                       
Query: 456 tgtgacttttgtcaatccactctgcgcgcccttcactaacaagagctgcaaggaacactt 515
           |||||| |||||| |||||||| || || |||||||| |  |||||||||||||||||||
Sbjct: 682 tgtgacctttgtccatccactcagcacgaccttcactgatgagagctgcaaggaacactt 741

                       
Query: 516 cctttgcttcat 527
           ||||||||||||
Sbjct: 742 cctttgcttcat 753
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  129 bits (65), Expect = 1e-26
 Identities = 105/117 (89%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                            
Query: 539      ctctcaatcttttgattggaaaacaacggaaaatcttcttccagggagattatatacatc 598
                ||||| |||||| ||||||| ||||| || ||||||||||| |||||||||||||| | |
Sbjct: 26780481 ctctcgatctttggattggagaacaatgggaaatcttcttctagggagattatatatagc 26780540

                                                                         
Query: 599      ttttgacttctacagtaatcaagtatcagctcttttccatagctgcacttgcttttc 655
                |||||||||||||| |||||||||||||| || |||||| |||||||||||||||||
Sbjct: 26780541 ttttgacttctacaataatcaagtatcagatc-tttccacagctgcacttgcttttc 26780596



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                            
Query: 403      taatatatagttagcccaatcttgaattcgcagccaaagaatgagacacttcttgtgact 462
                |||||| ||||||||||||||||| || |||| |||||||||||| |||||||| |||| 
Sbjct: 26779977 taatatgtagttagcccaatcttgtatccgcaaccaaagaatgaggcacttcttatgacc 26780036

                                  
Query: 463      tttgtcaatccactctgc 480
                |||||| ||||| |||||
Sbjct: 26780037 tttgtccatccattctgc 26780054



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                            
Query: 212      gaaaatttcacgccttcatcgtctgctgacgtgcccttaaagataactgcctttcccttc 271
                |||||||| || |||||||| || ||||| ||||||||||| ||  |||| || ||||||
Sbjct: 26778747 gaaaattttacaccttcatcatcagctgaagtgcccttaaaaatcgctgctttgcccttc 26778806

                                                                        
Query: 272      tgttccaacagcctcaaagctcgcatgaggacaccacgatcaattcccgcaagttc 327
                |||||||  | | ||||||| | |||||| |||||||| |||||||| ||||||||
Sbjct: 26778807 tgttccagtaacttcaaagccctcatgagaacaccacggtcaattccggcaagttc 26778862



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 493      aacaagagctgcaaggaacacttcctttgcttcat 527
                ||||||||| |||||||| ||||||||||||||||
Sbjct: 26780184 aacaagagcagcaaggaatacttcctttgcttcat 26780218
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>dbj|AP003291.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684E06
          Length = 147004

 Score =  129 bits (65), Expect = 1e-26
 Identities = 105/117 (89%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                         
Query: 539   ctctcaatcttttgattggaaaacaacggaaaatcttcttccagggagattatatacatc 598
             ||||| |||||| ||||||| ||||| || ||||||||||| |||||||||||||| | |
Sbjct: 16130 ctctcgatctttggattggagaacaatgggaaatcttcttctagggagattatatatagc 16189

                                                                      
Query: 599   ttttgacttctacagtaatcaagtatcagctcttttccatagctgcacttgcttttc 655
             |||||||||||||| |||||||||||||| || |||||| |||||||||||||||||
Sbjct: 16190 ttttgacttctacaataatcaagtatcagatc-tttccacagctgcacttgcttttc 16245



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                         
Query: 403   taatatatagttagcccaatcttgaattcgcagccaaagaatgagacacttcttgtgact 462
             |||||| ||||||||||||||||| || |||| |||||||||||| |||||||| |||| 
Sbjct: 15626 taatatgtagttagcccaatcttgtatccgcaaccaaagaatgaggcacttcttatgacc 15685

                               
Query: 463   tttgtcaatccactctgc 480
             |||||| ||||| |||||
Sbjct: 15686 tttgtccatccattctgc 15703



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                         
Query: 212   gaaaatttcacgccttcatcgtctgctgacgtgcccttaaagataactgcctttcccttc 271
             |||||||| || |||||||| || ||||| ||||||||||| ||  |||| || ||||||
Sbjct: 14396 gaaaattttacaccttcatcatcagctgaagtgcccttaaaaatcgctgctttgcccttc 14455

                                                                     
Query: 272   tgttccaacagcctcaaagctcgcatgaggacaccacgatcaattcccgcaagttc 327
             |||||||  | | ||||||| | |||||| |||||||| |||||||| ||||||||
Sbjct: 14456 tgttccagtaacttcaaagccctcatgagaacaccacggtcaattccggcaagttc 14511



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 493   aacaagagctgcaaggaacacttcctttgcttcat 527
             ||||||||| |||||||| ||||||||||||||||
Sbjct: 15833 aacaagagcagcaaggaatacttcctttgcttcat 15867
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>dbj|AP003294.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0694A04
          Length = 141476

 Score =  129 bits (65), Expect = 1e-26
 Identities = 105/117 (89%), Gaps = 1/117 (0%)
 Strand = Plus / Plus

                                                                          
Query: 539    ctctcaatcttttgattggaaaacaacggaaaatcttcttccagggagattatatacatc 598
              ||||| |||||| ||||||| ||||| || ||||||||||| |||||||||||||| | |
Sbjct: 127573 ctctcgatctttggattggagaacaatgggaaatcttcttctagggagattatatatagc 127632

                                                                       
Query: 599    ttttgacttctacagtaatcaagtatcagctcttttccatagctgcacttgcttttc 655
              |||||||||||||| |||||||||||||| || |||||| |||||||||||||||||
Sbjct: 127633 ttttgacttctacaataatcaagtatcagatc-tttccacagctgcacttgcttttc 127688



 Score = 83.8 bits (42), Expect = 7e-13
 Identities = 69/78 (88%)
 Strand = Plus / Plus

                                                                          
Query: 403    taatatatagttagcccaatcttgaattcgcagccaaagaatgagacacttcttgtgact 462
              |||||| ||||||||||||||||| || |||| |||||||||||| |||||||| |||| 
Sbjct: 127069 taatatgtagttagcccaatcttgtatccgcaaccaaagaatgaggcacttcttatgacc 127128

                                
Query: 463    tttgtcaatccactctgc 480
              |||||| ||||| |||||
Sbjct: 127129 tttgtccatccattctgc 127146



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Plus

                                                                          
Query: 212    gaaaatttcacgccttcatcgtctgctgacgtgcccttaaagataactgcctttcccttc 271
              |||||||| || |||||||| || ||||| ||||||||||| ||  |||| || ||||||
Sbjct: 125839 gaaaattttacaccttcatcatcagctgaagtgcccttaaaaatcgctgctttgcccttc 125898

                                                                      
Query: 272    tgttccaacagcctcaaagctcgcatgaggacaccacgatcaattcccgcaagttc 327
              |||||||  | | ||||||| | |||||| |||||||| |||||||| ||||||||
Sbjct: 125899 tgttccagtaacttcaaagccctcatgagaacaccacggtcaattccggcaagttc 125954



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                 
Query: 493    aacaagagctgcaaggaacacttcctttgcttcat 527
              ||||||||| |||||||| ||||||||||||||||
Sbjct: 127276 aacaagagcagcaaggaatacttcctttgcttcat 127310
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>ref|NM_192451.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1125

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 118/141 (83%)
 Strand = Plus / Minus

                                                                       
Query: 225 cttcatcgtctgctgacgtgcccttaaagataactgcctttcccttctgttccaacagcc 284
           ||||||| || ||||| ||||||||||| ||  |||| || |||||||||||||  | | 
Sbjct: 220 cttcatcatcagctgaagtgcccttaaaaatcgctgctttgcccttctgttccagtaact 161

                                                                       
Query: 285 tcaaagctcgcatgaggacaccacgatcaattcccgcaagttcggtcccatgtgtttcaa 344
           ||||||| | |||||| |||||||| |||||||| |||||||| |||||| |||||||||
Sbjct: 160 tcaaagccctcatgagaacaccacggtcaattccggcaagttcagtcccacgtgtttcaa 101

                                
Query: 345 ttccagagcgtagatcttcaa 365
           |||| || ||||  |||||||
Sbjct: 100 ttcctgaacgtatttcttcaa 80



 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 493 aacaagagctgcaaggaacacttcctttgcttcat 527
           ||||||||| |||||||| ||||||||||||||||
Sbjct: 35  aacaagagcagcaaggaatacttcctttgcttcat 1
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>ref|NM_202841.1| Arabidopsis thaliana unknown protein AT4G19003 transcript variant
           AT4G19003.2 mRNA, complete cds
          Length = 910

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 416 gcccaatcttgaattcgcagccaaagaatgagacacttcttgtgacttttgtcaatccac 475
           |||||||||||||| ||  |||| ||||| ||||| ||| | || | ||| || | ||||
Sbjct: 598 gcccaatcttgaatccggtgccacagaataagacatttcctatgccctttatctaaccac 539

                                                                       
Query: 476 tctgcgcgcccttcactaacaagagctgcaaggaacacttcctttgcttcataacttaga 535
           || || |||||||||| |||||  |||| ||| ||   |||| ||||||||| |||||||
Sbjct: 538 tccgcacgcccttcaccaacaatggctgaaagaaatgtttcccttgcttcatgacttaga 479

                      
Query: 536 gatctctcaat 546
           ||||| |||||
Sbjct: 478 gatctatcaat 468
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>ref|NM_148354.2| Arabidopsis thaliana unknown protein AT4G19003 transcript variant
           AT4G19003.1 mRNA, complete cds
          Length = 746

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 416 gcccaatcttgaattcgcagccaaagaatgagacacttcttgtgacttttgtcaatccac 475
           |||||||||||||| ||  |||| ||||| ||||| ||| | || | ||| || | ||||
Sbjct: 434 gcccaatcttgaatccggtgccacagaataagacatttcctatgccctttatctaaccac 375

                                                                       
Query: 476 tctgcgcgcccttcactaacaagagctgcaaggaacacttcctttgcttcataacttaga 535
           || || |||||||||| |||||  |||| ||| ||   |||| ||||||||| |||||||
Sbjct: 374 tccgcacgcccttcaccaacaatggctgaaagaaatgtttcccttgcttcatgacttaga 315

                      
Query: 536 gatctctcaat 546
           ||||| |||||
Sbjct: 314 gatctatcaat 304
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>gb|AY093752.1| Arabidopsis thaliana At4g19004/At4g19004 mRNA, complete cds
          Length = 540

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 416 gcccaatcttgaattcgcagccaaagaatgagacacttcttgtgacttttgtcaatccac 475
           |||||||||||||| ||  |||| ||||| ||||| ||| | || | ||| || | ||||
Sbjct: 323 gcccaatcttgaatccggtgccacagaataagacatttcctatgccctttatctaaccac 264

                                                                       
Query: 476 tctgcgcgcccttcactaacaagagctgcaaggaacacttcctttgcttcataacttaga 535
           || || |||||||||| |||||  |||| ||| ||   |||| ||||||||| |||||||
Sbjct: 263 tccgcacgcccttcaccaacaatggctgaaagaaatgtttcccttgcttcatgacttaga 204

                      
Query: 536 gatctctcaat 546
           ||||| |||||
Sbjct: 203 gatctatcaat 193
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>gb|AY065055.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 740

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 105/131 (80%)
 Strand = Plus / Minus

                                                                       
Query: 416 gcccaatcttgaattcgcagccaaagaatgagacacttcttgtgacttttgtcaatccac 475
           |||||||||||||| ||  |||| ||||| ||||| ||| | || | ||| || | ||||
Sbjct: 434 gcccaatcttgaatccggtgccacagaataagacatttcctatgccctttatctaaccac 375

                                                                       
Query: 476 tctgcgcgcccttcactaacaagagctgcaaggaacacttcctttgcttcataacttaga 535
           || || |||||||||| |||||  |||| ||| ||   |||| ||||||||| |||||||
Sbjct: 374 tccgcacgcccttcaccaacaatggctgaaagaaatgtttcccttgcttcatgacttaga 315

                      
Query: 536 gatctctcaat 546
           ||||| |||||
Sbjct: 314 gatctatcaat 304
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>gb|AC167523.3| Loxodonta africana clone VMRC15-427D17, complete sequence
          Length = 31152

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 572   tcttcttccagggagattatat 593
             ||||||||||||||||||||||
Sbjct: 12214 tcttcttccagggagattatat 12235
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>gb|AC007245.3| Homo sapiens BAC clone RP11-273L18 from 7, complete sequence
          Length = 133137

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 248    ttaaagataactgcctttccct 269
              ||||||||||||||||||||||
Sbjct: 120263 ttaaagataactgcctttccct 120284
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>gb|AC145918.3| Pan troglodytes BAC clone RP43-9J6 from 7, complete sequence
          Length = 214272

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 248  ttaaagataactgcctttccct 269
            ||||||||||||||||||||||
Sbjct: 4595 ttaaagataactgcctttccct 4616
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>gb|AC090827.11| Homo sapiens chromosome 8, clone CTD-2594K21, complete sequence
          Length = 135010

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 249  taaagataactgcctttccctt 270
            ||||||||||||||||||||||
Sbjct: 8114 taaagataactgcctttccctt 8093
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>gb|AC087370.26| Homo sapiens chromosome 8, clone RP11-533K17, complete sequence
          Length = 53432

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 249   taaagataactgcctttccctt 270
             ||||||||||||||||||||||
Sbjct: 52832 taaagataactgcctttccctt 52811
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>dbj|AP004582.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB925E9
          Length = 93034

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 249  taaagataactgcctttccctt 270
            ||||||||||||||||||||||
Sbjct: 7514 taaagataactgcctttccctt 7535
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>gb|AC150653.5| Bos taurus  BAC CH240-226L9 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 158246

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    acaaatacggcaaatacatac 84
             |||||||||||||||||||||
Sbjct: 78422 acaaatacggcaaatacatac 78442
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>gb|AC150858.4| Bos taurus  BAC CH240-431L22 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 166138

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 198    acaaagtttaggcagaaaatt 218
              |||||||||||||||||||||
Sbjct: 152893 acaaagtttaggcagaaaatt 152913
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>gb|AC159638.2| Mus musculus BAC clone RP24-78C16 from chromosome 12, complete
            sequence
          Length = 190196

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 2    ttcataggtatataaaatatg 22
            |||||||||||||||||||||
Sbjct: 7797 ttcataggtatataaaatatg 7817
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>emb|AL358532.11| Human DNA sequence from clone RP11-186O14 on chromosome 10 Contains the
             LIPF gene for gastric lipase, the genes for two novel
             ab-hydrolase associated lipase region domain containing
             proteins and a CHC1L (chromosome condensation 1-like
             RCC1-like G exchanging factor RLG) pseudogene, complete
             sequence
          Length = 161826

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 372   ttacttccaacccattttcctttac 396
             |||||| ||||||||||||||||||
Sbjct: 70116 ttactttcaacccattttcctttac 70140
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>gb|AC100801.4| Homo sapiens chromosome 8, clone CTA-392E5, complete sequence
          Length = 111708

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 593   tacatcttttgacttctacag 613
             |||||||||||||||||||||
Sbjct: 76501 tacatcttttgacttctacag 76481
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>emb|AL663051.15| Mouse DNA sequence from clone RP23-450J13 on chromosome 11 Contains the
              5' end of the gene for a novel protein and a CpG island,
              complete sequence
          Length = 156183

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 485    ccttcactaacaagagctgcaagga 509
              |||||||||||||||||||| ||||
Sbjct: 141661 ccttcactaacaagagctgctagga 141637
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>gb|AC112169.2| Homo sapiens chromosome 5 clone CTD-2016H11, complete sequence
          Length = 168329

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 627   gctcttttccatagctgcacttgct 651
             ||||||| |||||||||||||||||
Sbjct: 66014 gctctttgccatagctgcacttgct 66038
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>gb|AC016743.10| Homo sapiens BAC clone RP11-475H17 from 2, complete sequence
          Length = 144355

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 332   ccatgtgtttcaattccagag 352
             |||||||||||||||||||||
Sbjct: 77520 ccatgtgtttcaattccagag 77540
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>gb|AF206725.6| Homo sapiens chromosome 8 clone CTA-392E5 map q21-q23, complete
             sequence
          Length = 111702

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 593   tacatcttttgacttctacag 613
             |||||||||||||||||||||
Sbjct: 35203 tacatcttttgacttctacag 35223
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>emb|BX842239.2| Mouse DNA sequence from clone RP23-454A1 on chromosome X, complete
             sequence
          Length = 58222

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 502   tgcaaggaacacttcctttgcttca 526
             ||||| |||||||||||||||||||
Sbjct: 38436 tgcaaagaacacttcctttgcttca 38412
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>emb|AL808134.17| Mouse DNA sequence from clone RP23-135E1 on chromosome X, complete
             sequence
          Length = 195763

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 502   tgcaaggaacacttcctttgcttca 526
             ||||| |||||||||||||||||||
Sbjct: 68027 tgcaaagaacacttcctttgcttca 68051
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>emb|BX530025.6| Mouse DNA sequence from clone RP23-14E18 on chromosome X, complete
             sequence
          Length = 104719

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 502   tgcaaggaacacttcctttgcttca 526
             ||||| |||||||||||||||||||
Sbjct: 66579 tgcaaagaacacttcctttgcttca 66603
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>gb|AC079959.25| Mus musculus strain C57BL/6J chromosome 12 clone rp23-327i21, complete
             sequence
          Length = 218889

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     ttcataggtatataaaatatg 22
             |||||||||||||||||||||
Sbjct: 48490 ttcataggtatataaaatatg 48470
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>gb|AC153633.10| Mus musculus 6 BAC RP23-13K24 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 216841

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 1     tttcataggtatataaaatatgct 24
             ||||||||||||||| ||||||||
Sbjct: 73977 tttcataggtatatataatatgct 73954
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>gb|AC131694.4| Mus musculus BAC clone RP23-393L24 from chromosome 6, complete sequence
          Length = 187925

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 599    ttttgacttctacagtaatc 618
              ||||||||||||||||||||
Sbjct: 107719 ttttgacttctacagtaatc 107700
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>emb|BX649356.19| Zebrafish DNA sequence from clone CH211-209H5 in linkage group 3,
              complete sequence
          Length = 200759

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 593    tacatcttttgacttctacagtaa 616
              ||||||||||||||| ||||||||
Sbjct: 146990 tacatcttttgacttatacagtaa 147013
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>gb|AC122845.4| Mus musculus BAC clone RP23-155G2 from 1, complete sequence
          Length = 215455

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 633    ttccatagctgcacttgctt 652
              ||||||||||||||||||||
Sbjct: 211147 ttccatagctgcacttgctt 211128
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>emb|AL583917.1|MLEPRTN1 Mycobacterium leprae strain TN complete genome; segment 1/10
          Length = 344050

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    gatcaattcccgcaagttcg 328
              ||||||||||||||||||||
Sbjct: 217054 gatcaattcccgcaagttcg 217035
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>emb|AL035500.1|MLCL373 Mycobacterium leprae cosmid L373
          Length = 37304

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  gatcaattcccgcaagttcg 328
            ||||||||||||||||||||
Sbjct: 1201 gatcaattcccgcaagttcg 1182
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>gb|AC105933.2| Homo sapiens chromosome 3 clone RP11-454I5, complete sequence
          Length = 175370

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 594    acatcttttgacttctacag 613
              ||||||||||||||||||||
Sbjct: 147847 acatcttttgacttctacag 147866
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>emb|AL645903.8| Mouse DNA sequence from clone RP23-179M4 on chromosome 11, complete
             sequence
          Length = 181669

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 1     tttcataggtatataaaatatgct 24
             ||||||||||||||| ||||||||
Sbjct: 43916 tttcataggtatatataatatgct 43939
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>emb|BX537117.6| Zebrafish DNA sequence from clone CH211-281N15 in linkage group 17,
             complete sequence
          Length = 161999

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    tataaaatatgctgaagatg 31
             ||||||||||||||||||||
Sbjct: 63060 tataaaatatgctgaagatg 63079
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>gb|AC008543.9| Homo sapiens chromosome 19 clone CTC-499B15, complete sequence
          Length = 231247

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 199    caaagtttaggcagaaaatt 218
              ||||||||||||||||||||
Sbjct: 111842 caaagtttaggcagaaaatt 111823
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>gb|AC108027.5| Homo sapiens BAC clone RP11-64C8 from 4, complete sequence
          Length = 73256

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   ttagtgcaaacaaagtttag 208
             ||||||||||||||||||||
Sbjct: 32069 ttagtgcaaacaaagtttag 32088
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>gb|AC007363.3| Homo sapiens BAC clone RP11-294L11 from 2, complete sequence
          Length = 198628

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 252   agataactgcctttcccttc 271
             ||||||||||||||||||||
Sbjct: 35157 agataactgcctttcccttc 35138
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>gb|AC099053.2| Homo sapiens chromosome 3 clone RP11-464H2, complete sequence
          Length = 200069

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 594   acatcttttgacttctacag 613
             ||||||||||||||||||||
Sbjct: 18058 acatcttttgacttctacag 18077
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>gb|AC104512.11| Drosophila melanogaster  BAC RP98-39C15 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172654

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 376    ttccaacccattttccttta 395
              ||||||||||||||||||||
Sbjct: 120885 ttccaacccattttccttta 120866
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>gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 of 74 of the complete
             sequence
          Length = 316794

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 376   ttccaacccattttccttta 395
             ||||||||||||||||||||
Sbjct: 22787 ttccaacccattttccttta 22806
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>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 5    ataggtatataaaatatgct 24
            ||||||||||||||||||||
Sbjct: 8726 ataggtatataaaatatgct 8707
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>gb|AC140553.3| Mus musculus BAC clone RP24-71M17 from 1, complete sequence
          Length = 217538

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 633    ttccatagctgcacttgctt 652
              ||||||||||||||||||||
Sbjct: 116624 ttccatagctgcacttgctt 116605
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>dbj|AP004938.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT08M07, TM0096b,
             complete sequence
          Length = 65932

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 588   ttatatacatcttttgactt 607
             ||||||||||||||||||||
Sbjct: 11322 ttatatacatcttttgactt 11341
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>gb|AC153888.3| Mus musculus 6 BAC RP23-428L22 (Roswell Park Cancer Institute
           (C57BL/6J Female) Mouse6 BAC Library) complete sequence
          Length = 178961

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 1   tttcataggtatataaaatatgct 24
           ||||||||||||||| ||||||||
Sbjct: 771 tttcataggtatatataatatgct 794
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>dbj|AP001538.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B853K11,
             LL56-APP region, complete sequence
          Length = 174019

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ataggtatataaaatatgct 24
             ||||||||||||||||||||
Sbjct: 17515 ataggtatataaaatatgct 17496


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,145,500
Number of Sequences: 3902068
Number of extensions: 6145500
Number of successful extensions: 104017
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 103862
Number of HSP's gapped (non-prelim): 146
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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