| Clone Name | rbags38m06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_483544.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1012 Score = 371 bits (187), Expect = 2e-99 Identities = 298/335 (88%) Strand = Plus / Minus Query: 317 gcagcatcaccttcagaggaattggctgcagggatgaaatcatggtggttcacacttaga 376 |||||| |||| || || |||||||| ||||| |||||||||||||||||||||||| | Sbjct: 586 gcagcagcaccgtccgatgaattggcctcagggctgaaatcatggtggttcacacttata 527 Query: 377 ttgcctgtgtcacaagagcttcggtctaggtacatcacgcggattggcacccctaacgca 436 || || | ||||| ||||||| ||||||||||||||| ||||||||||| || |||||| Sbjct: 526 tttccagcatcacatgagcttctgtctaggtacatcacacggattggcacacccaacgca 467 Query: 437 tctgacagagcaataatgtgcacatggtcactttcctcgcccattggctccacagaagac 496 ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||| | Sbjct: 466 tctgatagggcaattatgtggacatggtcactttcctcgcccatcggctccacggaagcc 407 Query: 497 ttgcaaaactgaaccacggtcgaatttgtcaagccagaaataaatggttcaaagaactca 556 ||||| ||||||||||| |||||||||||||||||||| || |||||||| |||||||| Sbjct: 406 ttgcagaactgaaccacagtcgaatttgtcaagccagagatgaatggttcgaagaactcg 347 Query: 557 gccctcctttgaatttcaccagaggtaacaaatctaaagaacatgacaacataatcagaa 616 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 346 gccctcctttggatttcaccagaggtgacaaacctaaagaacatgacaacataatcagaa 287 Query: 617 gtcgtctgatccctggttctttctagaagttcttc 651 | ||||||||||||||||||||||||| ||||| Sbjct: 286 accatctgatccctggttctttctagaagctcttc 252 Score = 111 bits (56), Expect = 3e-21 Identities = 68/72 (94%) Strand = Plus / Minus Query: 231 atcacttcgggtagagaatgtcatagtgaccaggccggtagagcagagtaatgtaaggtt 290 |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| Sbjct: 654 atcacttcgggtagagaatgtcgtagtgaccaggacggtagagcaaagtaatgtaaggtt 595 Query: 291 tctcatcagcag 302 ||||| |||||| Sbjct: 594 tctcagcagcag 583 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 117 ttgtaaggccg-cctttggcagcatgcaggagcaacacaactacacagttctagacaacg 175 ||||||||||| ||||||| ||||||| ||||| || ||||||| ||||||||||| || Sbjct: 766 ttgtaaggccggcctttggtggcatgcacgagcaccataactacagagttctagacagcg 707 Query: 176 ctttctcaa 184 |||||||| Sbjct: 706 atttctcaa 698
>dbj|AK059388.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-H03, full insert sequence Length = 1012 Score = 363 bits (183), Expect = 5e-97 Identities = 297/335 (88%) Strand = Plus / Minus Query: 317 gcagcatcaccttcagaggaattggctgcagggatgaaatcatggtggttcacacttaga 376 |||||| |||| || || |||||||| ||||| |||||||||||||||||||||||| | Sbjct: 586 gcagcagcaccgtccgatgaattggcctcagggctgaaatcatggtggttcacacttata 527 Query: 377 ttgcctgtgtcacaagagcttcggtctaggtacatcacgcggattggcacccctaacgca 436 || || | ||||| ||||||| ||||||||||||||| ||||||||||| || |||||| Sbjct: 526 tttccagcatcacatgagcttctgtctaggtacatcacacggattggcacacccaacgca 467 Query: 437 tctgacagagcaataatgtgcacatggtcactttcctcgcccattggctccacagaagac 496 ||||| || ||||| ||||| |||||||||||| |||||||||| |||||||| |||| | Sbjct: 466 tctgatagggcaattatgtggacatggtcacttccctcgcccatcggctccacggaagcc 407 Query: 497 ttgcaaaactgaaccacggtcgaatttgtcaagccagaaataaatggttcaaagaactca 556 ||||| ||||||||||| |||||||||||||||||||| || |||||||| |||||||| Sbjct: 406 ttgcagaactgaaccacagtcgaatttgtcaagccagagatgaatggttcgaagaactcg 347 Query: 557 gccctcctttgaatttcaccagaggtaacaaatctaaagaacatgacaacataatcagaa 616 ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 346 gccctcctttggatttcaccagaggtgacaaacctaaagaacatgacaacataatcagaa 287 Query: 617 gtcgtctgatccctggttctttctagaagttcttc 651 | ||||||||||||||||||||||||| ||||| Sbjct: 286 accatctgatccctggttctttctagaagctcttc 252 Score = 111 bits (56), Expect = 3e-21 Identities = 68/72 (94%) Strand = Plus / Minus Query: 231 atcacttcgggtagagaatgtcatagtgaccaggccggtagagcagagtaatgtaaggtt 290 |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| Sbjct: 654 atcacttcgggtagagaatgtcgtagtgaccaggacggtagagcaaagtaatgtaaggtt 595 Query: 291 tctcatcagcag 302 ||||| |||||| Sbjct: 594 tctcagcagcag 583 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Minus Query: 117 ttgtaaggccg-cctttggcagcatgcaggagcaacacaactacacagttctagacaacg 175 ||||||||||| ||||||| ||||||| ||||| || ||||||| ||||||||||| || Sbjct: 766 ttgtaaggccggcctttggtggcatgcacgagcaccataactacagagttctagacagcg 707 Query: 176 ctttctcaa 184 |||||||| Sbjct: 706 atttctcaa 698
>gb|AY108356.1| Zea mays PCO102545 mRNA sequence Length = 1393 Score = 307 bits (155), Expect = 2e-80 Identities = 274/311 (88%), Gaps = 2/311 (0%) Strand = Plus / Minus Query: 347 gggatgaaatcatggtggttcacacttagattgcctgtgtcacaagagcttcggtctagg 406 ||||||||||| ||||| ||||| || || ||||| |||||||| ||||||||||||||| Sbjct: 1052 gggatgaaatcgtggtgattcacgctcaggttgccagtgtcacacgagcttcggtctagg 993 Query: 407 tacatcacgcggattggcacccctaacgcatctgacagagcaataatgtgcacatggtca 466 ||||| || |||||||| || |||| |||||||| || ||||| ||||||||||||||| Sbjct: 992 tacataacacggattggtacgcctagtgcatctgatagggcaattatgtgcacatggtca 933 Query: 467 ctttcctcgcccattggctccacagaagacttgcaaaactgaaccacggtcgaatttgtc 526 |||||||| ||||| || |||||||||| |||||| |||||||||||||| ||||||||| Sbjct: 932 ctttcctcacccataggttccacagaagccttgcagaactgaaccacggttgaatttgtc 873 Query: 527 aagccagaaataaatggttcaaagaactcagccctcctttgaatttcaccagaggtaaca 586 |||||||| || || ||||||||||| |||| ||||||||||||||||||||| || ||| Sbjct: 872 aagccagatatgaacggttcaaagaagtcagacctcctttgaatttcaccagaagtgaca 813 Query: 587 aatctaaagaacatgacaacataatcag-aagtcgtctgatccctggttctttctagaag 645 || ||||||||||||||||||||||||| || | || |||| ||||||||||||||||| Sbjct: 812 aacctaaagaacatgacaacataatcagaaacttgt-ggatctctggttctttctagaag 754 Query: 646 ttcttcaggcc 656 |||||||||| Sbjct: 753 ctcttcaggcc 743 Score = 61.9 bits (31), Expect = 2e-06 Identities = 55/63 (87%) Strand = Plus / Minus Query: 232 tcacttcgggtagagaatgtcatagtgaccaggccggtagagcagagtaatgtaaggttt 291 |||||| ||||||||||| || ||||| ||||| |||||||||| ||| ||||| ||||| Sbjct: 1167 tcactttgggtagagaatatcgtagtggccaggacggtagagcaaagtgatgtacggttt 1108 Query: 292 ctc 294 ||| Sbjct: 1107 ctc 1105
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 180 bits (91), Expect = 4e-42 Identities = 166/191 (86%) Strand = Plus / Plus Query: 317 gcagcatcaccttcagaggaattggctgcagggatgaaatcatggtggttcacacttaga 376 |||||| |||| || || |||||||| ||||| |||||||||||||||||||||||| | Sbjct: 26876310 gcagcagcaccgtccgatgaattggcctcagggctgaaatcatggtggttcacacttata 26876369 Query: 377 ttgcctgtgtcacaagagcttcggtctaggtacatcacgcggattggcacccctaacgca 436 || || | ||||| ||||||| ||||||||||||||| ||||||||||| || |||||| Sbjct: 26876370 tttccagcatcacatgagcttctgtctaggtacatcacacggattggcacacccaacgca 26876429 Query: 437 tctgacagagcaataatgtgcacatggtcactttcctcgcccattggctccacagaagac 496 ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||| | Sbjct: 26876430 tctgatagggcaattatgtggacatggtcactttcctcgcccatcggctccacggaagcc 26876489 Query: 497 ttgcaaaactg 507 ||||| ||||| Sbjct: 26876490 ttgcagaactg 26876500 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 505 ctgaaccacggtcgaatttgtcaagccagaaataaatggttcaaagaactcagccctcct 564 ||||||||| |||||||||||||||||||| || |||||||| |||||||| |||||||| Sbjct: 26877240 ctgaaccacagtcgaatttgtcaagccagagatgaatggttcgaagaactcggccctcct 26877299 Query: 565 ttgaatttcaccagaggtaacaaatctaaagaacatgacaac 606 ||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 26877300 ttggatttcaccagaggtgacaaacctaaagaacatgacaac 26877341 Score = 111 bits (56), Expect = 3e-21 Identities = 68/72 (94%) Strand = Plus / Plus Query: 231 atcacttcgggtagagaatgtcatagtgaccaggccggtagagcagagtaatgtaaggtt 290 |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| Sbjct: 26876242 atcacttcgggtagagaatgtcgtagtgaccaggacggtagagcaaagtaatgtaaggtt 26876301 Query: 291 tctcatcagcag 302 ||||| |||||| Sbjct: 26876302 tctcagcagcag 26876313 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 606 cataatcagaagtcgtctgatccctggttctttctagaagttcttc 651 ||||||||||| | ||||||||||||||||||||||||| ||||| Sbjct: 26877413 cataatcagaaaccatctgatccctggttctttctagaagctcttc 26877458 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 117 ttgtaaggccg-cctttggcagcatgcaggagcaacacaactacacagttctagacaacg 175 ||||||||||| ||||||| ||||||| ||||| || ||||||| ||||||||||| || Sbjct: 26876130 ttgtaaggccggcctttggtggcatgcacgagcaccataactacagagttctagacagcg 26876189 Query: 176 ctttctcaa 184 |||||||| Sbjct: 26876190 atttctcaa 26876198
>dbj|AP004464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0665C04 Length = 177054 Score = 180 bits (91), Expect = 4e-42 Identities = 166/191 (86%) Strand = Plus / Plus Query: 317 gcagcatcaccttcagaggaattggctgcagggatgaaatcatggtggttcacacttaga 376 |||||| |||| || || |||||||| ||||| |||||||||||||||||||||||| | Sbjct: 139100 gcagcagcaccgtccgatgaattggcctcagggctgaaatcatggtggttcacacttata 139159 Query: 377 ttgcctgtgtcacaagagcttcggtctaggtacatcacgcggattggcacccctaacgca 436 || || | ||||| ||||||| ||||||||||||||| ||||||||||| || |||||| Sbjct: 139160 tttccagcatcacatgagcttctgtctaggtacatcacacggattggcacacccaacgca 139219 Query: 437 tctgacagagcaataatgtgcacatggtcactttcctcgcccattggctccacagaagac 496 ||||| || ||||| ||||| ||||||||||||||||||||||| |||||||| |||| | Sbjct: 139220 tctgatagggcaattatgtggacatggtcactttcctcgcccatcggctccacggaagcc 139279 Query: 497 ttgcaaaactg 507 ||||| ||||| Sbjct: 139280 ttgcagaactg 139290 Score = 139 bits (70), Expect = 1e-29 Identities = 94/102 (92%) Strand = Plus / Plus Query: 505 ctgaaccacggtcgaatttgtcaagccagaaataaatggttcaaagaactcagccctcct 564 ||||||||| |||||||||||||||||||| || |||||||| |||||||| |||||||| Sbjct: 140030 ctgaaccacagtcgaatttgtcaagccagagatgaatggttcgaagaactcggccctcct 140089 Query: 565 ttgaatttcaccagaggtaacaaatctaaagaacatgacaac 606 ||| |||||||||||||| ||||| ||||||||||||||||| Sbjct: 140090 ttggatttcaccagaggtgacaaacctaaagaacatgacaac 140131 Score = 111 bits (56), Expect = 3e-21 Identities = 68/72 (94%) Strand = Plus / Plus Query: 231 atcacttcgggtagagaatgtcatagtgaccaggccggtagagcagagtaatgtaaggtt 290 |||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||| Sbjct: 139032 atcacttcgggtagagaatgtcgtagtgaccaggacggtagagcaaagtaatgtaaggtt 139091 Query: 291 tctcatcagcag 302 ||||| |||||| Sbjct: 139092 tctcagcagcag 139103 Score = 60.0 bits (30), Expect = 1e-05 Identities = 42/46 (91%) Strand = Plus / Plus Query: 606 cataatcagaagtcgtctgatccctggttctttctagaagttcttc 651 ||||||||||| | ||||||||||||||||||||||||| ||||| Sbjct: 140203 cataatcagaaaccatctgatccctggttctttctagaagctcttc 140248 Score = 58.0 bits (29), Expect = 4e-05 Identities = 60/69 (86%), Gaps = 1/69 (1%) Strand = Plus / Plus Query: 117 ttgtaaggccg-cctttggcagcatgcaggagcaacacaactacacagttctagacaacg 175 ||||||||||| ||||||| ||||||| ||||| || ||||||| ||||||||||| || Sbjct: 138920 ttgtaaggccggcctttggtggcatgcacgagcaccataactacagagttctagacagcg 138979 Query: 176 ctttctcaa 184 |||||||| Sbjct: 138980 atttctcaa 138988
>gb|AC147867.3| Gopherus agassizii clone TAMGA-59P20, complete sequence Length = 87205 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 119 gtaaggccgcctttggcagcatgc 142 |||||||||||||||||||||||| Sbjct: 8790 gtaaggccgcctttggcagcatgc 8813
>gb|DP000007.1| Gopherus agassizii target 1 genomic scaffold Length = 183005 Score = 48.1 bits (24), Expect = 0.037 Identities = 24/24 (100%) Strand = Plus / Plus Query: 119 gtaaggccgcctttggcagcatgc 142 |||||||||||||||||||||||| Sbjct: 8790 gtaaggccgcctttggcagcatgc 8813
>ref|NM_102577.2| Arabidopsis thaliana unknown protein AT1G28120 mRNA, complete cds Length = 1371 Score = 44.1 bits (22), Expect = 0.57 Identities = 46/54 (85%) Strand = Plus / Minus Query: 460 atggtcactttcctcgcccattggctccacagaagacttgcaaaactgaaccac 513 ||||||||| || || |||||||| || || || ||||||||||||||| |||| Sbjct: 874 atggtcactctcttcccccattggttcgaccgaggacttgcaaaactgatccac 821
>gb|BC106498.1| Xenopus laevis cDNA clone MGC:131231 IMAGE:7391203, complete cds Length = 996 Score = 44.1 bits (22), Expect = 0.57 Identities = 31/34 (91%) Strand = Plus / Minus Query: 440 gacagagcaataatgtgcacatggtcactttcct 473 ||||||||||| ||||| | |||||||||||||| Sbjct: 670 gacagagcaatgatgtgtatatggtcactttcct 637
>gb|BC106443.1| Xenopus laevis cDNA clone MGC:131147 IMAGE:7207230, complete cds Length = 979 Score = 44.1 bits (22), Expect = 0.57 Identities = 28/30 (93%) Strand = Plus / Minus Query: 241 gtagagaatgtcatagtgaccaggccggta 270 |||||||||||||||||| ||||| ||||| Sbjct: 811 gtagagaatgtcatagtgtccaggtcggta 782
>gb|AC122936.3| Mus musculus BAC clone RP23-20H6 from 5, complete sequence Length = 234064 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 190 attcatgggaaaaatcaaccttggtg 215 ||||||||||||||| |||||||||| Sbjct: 60145 attcatgggaaaaattaaccttggtg 60120
>gb|BT000164.1| Arabidopsis thaliana expressed protein (At1g28120) mRNA, complete cds Length = 1007 Score = 44.1 bits (22), Expect = 0.57 Identities = 46/54 (85%) Strand = Plus / Minus Query: 460 atggtcactttcctcgcccattggctccacagaagacttgcaaaactgaaccac 513 ||||||||| || || |||||||| || || || ||||||||||||||| |||| Sbjct: 678 atggtcactctcttcccccattggttcgaccgaggacttgcaaaactgatccac 625
>emb|AL772263.12| Zebrafish DNA sequence from clone CH211-160D11 in linkage group 6, complete sequence Length = 153222 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 190 attcatgggaaaaatcaacctt 211 |||||||||||||||||||||| Sbjct: 93438 attcatgggaaaaatcaacctt 93417
>gb|AY136373.1| Arabidopsis thaliana expressed protein (At1g28120) mRNA, complete cds Length = 1369 Score = 44.1 bits (22), Expect = 0.57 Identities = 46/54 (85%) Strand = Plus / Minus Query: 460 atggtcactttcctcgcccattggctccacagaagacttgcaaaactgaaccac 513 ||||||||| || || |||||||| || || || ||||||||||||||| |||| Sbjct: 876 atggtcactctcttcccccattggttcgaccgaggacttgcaaaactgatccac 823
>dbj|AK045229.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length enriched library, clone:B130049K10 product:unclassifiable, full insert sequence Length = 2723 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 190 attcatgggaaaaatcaaccttggtg 215 ||||||||||||||| |||||||||| Sbjct: 129 attcatgggaaaaattaaccttggtg 104
>emb|BX815298.1|CNS0ADV4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS4ZH01 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1267 Score = 44.1 bits (22), Expect = 0.57 Identities = 46/54 (85%) Strand = Plus / Minus Query: 460 atggtcactttcctcgcccattggctccacagaagacttgcaaaactgaaccac 513 ||||||||| || || |||||||| || || || ||||||||||||||| |||| Sbjct: 830 atggtcactctcttcccccattggttcgaccgaggacttgcaaaactgatccac 777
>gb|AY084389.1| Arabidopsis thaliana clone 106626 mRNA, complete sequence Length = 1331 Score = 44.1 bits (22), Expect = 0.57 Identities = 46/54 (85%) Strand = Plus / Minus Query: 460 atggtcactttcctcgcccattggctccacagaagacttgcaaaactgaaccac 513 ||||||||| || || |||||||| || || || ||||||||||||||| |||| Sbjct: 874 atggtcactctcttcccccattggttcaaccgaggacttgcaaaactgatccac 821
>gb|AC161507.2| Mus musculus chromosome 5, clone RP23-76L18, complete sequence Length = 262831 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Plus Query: 190 attcatgggaaaaatcaaccttggtg 215 ||||||||||||||| |||||||||| Sbjct: 62587 attcatgggaaaaattaaccttggtg 62612
>ref|NM_021932.4| Homo sapiens resistance to inhibitors of cholinesterase 8 homolog A (C. elegans) (RIC8A), mRNA Length = 2714 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2583 tagactacacttacaacaaggaaaa 2607
>gb|BC094717.1| Homo sapiens resistance to inhibitors of cholinesterase 8 homolog A (C. elegans), mRNA (cDNA clone IMAGE:5272094), containing frame-shift errors Length = 2419 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2289 tagactacacttacaacaaggaaaa 2313
>gb|BC011821.1| Homo sapiens resistance to inhibitors of cholinesterase 8 homolog A (C. elegans), mRNA (cDNA clone IMAGE:3688123), partial cds Length = 2181 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2048 tagactacacttacaacaaggaaaa 2072
>gb|BC111499.1| Homo sapiens resistance to inhibitors of cholinesterase 8 homolog A (C. elegans), mRNA (cDNA clone MGC:131931 IMAGE:6526180), complete cds Length = 2580 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2398 tagactacacttacaacaaggaaaa 2422
>emb|CR859797.1| Pongo pygmaeus mRNA; cDNA DKFZp468C139 (from clone DKFZp468C139) Length = 2524 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2302 tagactacacttacaacaaggaaaa 2326
>emb|AL136935.1|HSM801899 Homo sapiens mRNA; cDNA DKFZp586O0222 (from clone DKFZp586O0222) Length = 2714 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2583 tagactacacttacaacaaggaaaa 2607
>emb|CR601730.1| full-length cDNA clone CS0DI027YA04 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1317 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 1260 tagactacacttacaacaaggaaaa 1284
>dbj|AK027461.1| Homo sapiens cDNA FLJ14555 fis, clone NT2RM2001855 Length = 2395 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2272 tagactacacttacaacaaggaaaa 2296
>dbj|AK022870.1| Homo sapiens cDNA FLJ12808 fis, clone NT2RP2002373 Length = 2253 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2139 tagactacacttacaacaaggaaaa 2163
>gb|AC069287.7| Homo sapiens BAC clone RP11-304M2 from 11, complete sequence Length = 199487 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 44494 tagactacacttacaacaaggaaaa 44470
>gb|AC008276.4| Homo sapiens BAC clone RP11-297I3 from 2, complete sequence Length = 208477 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 75 agcatgctctgattactcccc 95 ||||||||||||||||||||| Sbjct: 205293 agcatgctctgattactcccc 205313
>dbj|AK026897.1| Homo sapiens cDNA: FLJ23244 fis, clone COL02432 Length = 3714 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 3583 tagactacacttacaacaaggaaaa 3607
>dbj|AK027090.1| Homo sapiens cDNA: FLJ23437 fis, clone HRC13266 Length = 1660 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 1511 tagactacacttacaacaaggaaaa 1535
>emb|AL954363.27| Zebrafish DNA sequence from clone CH211-175L6 in linkage group 3, complete sequence Length = 160599 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 554 tcagccctcctttgaatttca 574 ||||||||||||||||||||| Sbjct: 5837 tcagccctcctttgaatttca 5817
>emb|AL390088.1|IR1987170 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1987170 Length = 2457 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2305 tagactacacttacaacaaggaaaa 2329
>emb|BX538115.1|HSM806308 Homo sapiens mRNA; cDNA DKFZp686O16163 (from clone DKFZp686O16163) Length = 2672 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 2446 tagactacacttacaacaaggaaaa 2470
>gb|AY609773.1| Sus scrofa clone Clu_30530.scr.msk.p1.Contig1, mRNA sequence Length = 1691 Score = 42.1 bits (21), Expect = 2.3 Identities = 30/33 (90%) Strand = Plus / Minus Query: 241 gtagagaatgtcatagtgaccaggccggtagag 273 |||||| ||||| ||||| |||||||||||||| Sbjct: 825 gtagaggatgtcgtagtgtccaggccggtagag 793
>gb|AF015416.1|AF015416 Homo sapiens chromosome 11 from 11p15.5 region, complete sequence Length = 95038 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 554 tagactacacttacaacaaggaaaa 578
>gb|U73637.1|HSU73637 Human chromosome 11 168h3 cosmid, complete sequence Length = 35976 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 21 tagagtacacttacaacaaggaaaa 45 |||| |||||||||||||||||||| Sbjct: 549 tagactacacttacaacaaggaaaa 573
>emb|AL831776.3| Mouse DNA sequence from clone RP23-307M2 on chromosome 4, complete sequence Length = 204136 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 91 tccccaaggacacacaacgttccct 115 |||||||||||||||||| |||||| Sbjct: 180576 tccccaaggacacacaactttccct 180600
>ref|XM_960642.1| Neurospora crassa OR74A hypothetical protein (NCU00595.1) partial mRNA Length = 2001 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gggtagagaatgtcatagtg 258 |||||||||||||||||||| Sbjct: 1457 gggtagagaatgtcatagtg 1438
>ref|XM_324774.1| Neurospora crassa OR74A hypothetical protein (NCU00595.1) partial mRNA Length = 2001 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gggtagagaatgtcatagtg 258 |||||||||||||||||||| Sbjct: 1457 gggtagagaatgtcatagtg 1438
>ref|XM_651059.1| Entamoeba histolytica HM-1:IMSS protein with RhoGEF and ArfGAP domains (17.t00062) partial mRNA Length = 3138 Score = 40.1 bits (20), Expect = 9.0 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 530 ccagaaataaatggttca-aagaactca 556 |||||||||||||||||| ||||||||| Sbjct: 532 ccagaaataaatggttcacaagaactca 559
>emb|BX842641.1| Neurospora crassa DNA linkage group I BAC contig B22I21 Length = 124321 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 gggtagagaatgtcatagtg 258 |||||||||||||||||||| Sbjct: 36797 gggtagagaatgtcatagtg 36816
>emb|AL596264.13| Mouse DNA sequence from clone RP23-232G8 on chromosome 11 Contains a novel gene, complete sequence Length = 175724 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 188 gaattcatgggaaaaatcaa 207 |||||||||||||||||||| Sbjct: 63602 gaattcatgggaaaaatcaa 63583
>gb|BC047558.1| Homo sapiens cDNA clone IMAGE:5310744 Length = 4296 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 635 ctttctagaagttcttcagg 654 |||||||||||||||||||| Sbjct: 2231 ctttctagaagttcttcagg 2250
>dbj|AK123708.1| Homo sapiens cDNA FLJ41714 fis, clone HLUNG2012287 Length = 3099 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 635 ctttctagaagttcttcagg 654 |||||||||||||||||||| Sbjct: 1050 ctttctagaagttcttcagg 1069
>gb|AC104637.5| Homo sapiens 3 BAC RP11-387L24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 99960 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 586 aaatctaaagaacatgacaa 605 |||||||||||||||||||| Sbjct: 65301 aaatctaaagaacatgacaa 65282
>gb|AC099517.2| Homo sapiens chromosome 5 clone RP11-5H14, complete sequence Length = 150438 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 213 gtgttccatcagccagagatcact 236 ||||||||||| |||||||||||| Sbjct: 116947 gtgttccatcaaccagagatcact 116924
>gb|AC074250.6| Homo sapiens BAC clone RP11-622A1 from 4, complete sequence Length = 199331 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 545 tcaaagaactcagccctcctttga 568 ||||||||||||||| |||||||| Sbjct: 70442 tcaaagaactcagccttcctttga 70465
>gb|BC102210.1| Bos taurus similar to OTU domain, ubiquitin aldehyde binding 1, mRNA (cDNA clone MGC:127210 IMAGE:7946111), complete cds Length = 1060 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 241 gtagagaatgtcatagtgaccaggccggtagagcag 276 |||||| ||||| ||||| || |||||||||||||| Sbjct: 831 gtagaggatgtcgtagtgtccgggccggtagagcag 796
>gb|AC010230.6| Homo sapiens chromosome 5 clone CTC-313D10, complete sequence Length = 119004 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 ctttgaatttcaccagaggt 582 |||||||||||||||||||| Sbjct: 31933 ctttgaatttcaccagaggt 31952
>gb|AC109815.5| Homo sapiens BAC clone CTD-2192H8 from 2, complete sequence Length = 165158 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 ctttctagaagttcttcagg 654 |||||||||||||||||||| Sbjct: 16570 ctttctagaagttcttcagg 16551
>gb|AC108938.3| Homo sapiens BAC clone RP11-701A10 from 2, complete sequence Length = 175222 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 ctttctagaagttcttcagg 654 |||||||||||||||||||| Sbjct: 145666 ctttctagaagttcttcagg 145647
>gb|AC115115.4| Homo sapiens BAC clone RP11-812M14 from 2, complete sequence Length = 124457 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 ctttctagaagttcttcagg 654 |||||||||||||||||||| Sbjct: 118513 ctttctagaagttcttcagg 118494
>gb|AC013406.7| Homo sapiens BAC clone RP11-341F20 from 2, complete sequence Length = 190018 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 211 tggtgttccatcagccagag 230 |||||||||||||||||||| Sbjct: 145818 tggtgttccatcagccagag 145799
>gb|AC013271.4| Homo sapiens BAC clone RP11-385J6 from 2, complete sequence Length = 155702 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 635 ctttctagaagttcttcagg 654 |||||||||||||||||||| Sbjct: 84137 ctttctagaagttcttcagg 84118
>gb|AC109182.14| Mus musculus chromosome 7, clone RP23-223O9, complete sequence Length = 191479 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 209 cttggtgttccatcagccag 228 |||||||||||||||||||| Sbjct: 114996 cttggtgttccatcagccag 114977
>dbj|D61707.2|HUM7BMCP5 Homo sapiens mRNA for Ets-like protein, clone: 7B-MCP Length = 536 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 tagagtacacttacaacaaggaaa 44 |||| ||||||||||||||||||| Sbjct: 139 tagactacacttacaacaaggaaa 116
>emb|AL583809.3|CNS07EFY Human chromosome 14 DNA sequence BAC R-736L22 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 171699 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 aattggctgcagggatgaaa 355 |||||||||||||||||||| Sbjct: 80878 aattggctgcagggatgaaa 80897
>emb|AL732420.13| Mouse DNA sequence from clone RP23-84O5 on chromosome X, complete sequence Length = 191312 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 351 tgaaatcatggtggttcacactta 374 ||||||||||||||| |||||||| Sbjct: 36408 tgaaatcatggtggtacacactta 36431
>ref|NM_001034719.1| Bos taurus similar to OTU domain, ubiquitin aldehyde binding 1 (MGC127210), mRNA Length = 1060 Score = 40.1 bits (20), Expect = 9.0 Identities = 32/36 (88%) Strand = Plus / Minus Query: 241 gtagagaatgtcatagtgaccaggccggtagagcag 276 |||||| ||||| ||||| || |||||||||||||| Sbjct: 831 gtagaggatgtcgtagtgtccgggccggtagagcag 796
>gb|U30174.1|HSU30174 Human clone 7B ETS-like protein mRNA, partial sequence Length = 560 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 tagagtacacttacaacaaggaaa 44 |||| ||||||||||||||||||| Sbjct: 163 tagactacacttacaacaaggaaa 140
>emb|Z49985.1|HS7BMCP H.sapiens mRNA for ets-like protein (clone 7B) Length = 560 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 tagagtacacttacaacaaggaaa 44 |||| ||||||||||||||||||| Sbjct: 163 tagactacacttacaacaaggaaa 140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,543,128 Number of Sequences: 3902068 Number of extensions: 5543128 Number of successful extensions: 106978 Number of sequences better than 10.0: 62 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 106839 Number of HSP's gapped (non-prelim): 140 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)