ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags39b04 |
|---|---|
| Clone Library Name | barley_pub |
>PFPB_RICCO (Q41141) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 115 bits (289), Expect(3) = 9e-49 Identities = 51/62 (82%), Positives = 60/62 (96%) Frame = -1 Query: 422 HGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLEL 243 HGKFKPVIKKAMVEL+ APFKKFAS+R+EWA+KNRY+SPGPIQF GPGSDA++HTL+LEL Sbjct: 489 HGKFKPVIKKAMVELEGAPFKKFASLREEWALKNRYVSPGPIQFMGPGSDAASHTLLLEL 548 Query: 242 GA 237 G+ Sbjct: 549 GS 550 Score = 72.4 bits (176), Expect(3) = 9e-49 Identities = 35/42 (83%), Positives = 37/42 (88%) Frame = -3 Query: 555 YGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVE 430 Y AGALL GKTGLISSVGNL APV +WTVGGTALT+LMDVE Sbjct: 445 YAAGALLHSGKTGLISSVGNLGAPVAEWTVGGTALTSLMDVE 486 Score = 46.2 bits (108), Expect(3) = 9e-49 Identities = 18/19 (94%), Positives = 19/19 (100%) Frame = -2 Query: 616 YEGRCGLPTNFDSSYCYAL 560 YEGRCGLPTNFDS+YCYAL Sbjct: 425 YEGRCGLPTNFDSTYCYAL 443
>PFPB_SOLTU (P21343) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| beta subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 552 Score = 104 bits (259), Expect(3) = 8e-46 Identities = 47/63 (74%), Positives = 55/63 (87%) Frame = -1 Query: 422 HGKFKPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLEL 243 HGKFKPVIKKAMVEL+ APFKKFAS R+EWA+ NRYI+PGPIQF GP ++ NHTL+LEL Sbjct: 489 HGKFKPVIKKAMVELEGAPFKKFASKREEWALNNRYINPGPIQFVGPVANKVNHTLLLEL 548 Query: 242 GAE 234 G + Sbjct: 549 GVD 551 Score = 75.5 bits (184), Expect(3) = 8e-46 Identities = 38/42 (90%), Positives = 40/42 (95%) Frame = -3 Query: 555 YGAGALLQFGKTGLISSVGNLAAPVEQWTVGGTALTALMDVE 430 YGAG+LLQ GKTGLISSVGNLAAPVE+ TVGGTALTALMDVE Sbjct: 445 YGAGSLLQSGKTGLISSVGNLAAPVEELTVGGTALTALMDVE 486 Score = 44.7 bits (104), Expect(3) = 8e-46 Identities = 17/19 (89%), Positives = 19/19 (100%) Frame = -2 Query: 616 YEGRCGLPTNFDSSYCYAL 560 YEGRCGLP+NFDS+YCYAL Sbjct: 425 YEGRCGLPSNFDSTYCYAL 443
>PFPA_RICCO (Q41140) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 617 Score = 40.8 bits (94), Expect = 0.003 Identities = 20/55 (36%), Positives = 31/55 (56%) Frame = -1 Query: 410 KPVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 246 KP I A V+L ++ ++ + + Y +PGP+QF GPG+DA TL +E Sbjct: 504 KPAIHPAAVDLKGKAYELLRLNAVKFLMDDLYRNPGPLQFEGPGADAKPITLCVE 558
>PFPA_SOLTU (P21342) Pyrophosphate--fructose 6-phosphate 1-phosphotransferase| alpha subunit (EC 2.7.1.90) (PFP) (6-phosphofructokinase, pyrophosphate-dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) Length = 616 Score = 39.7 bits (91), Expect = 0.007 Identities = 17/54 (31%), Positives = 32/54 (59%) Frame = -1 Query: 407 PVIKKAMVELDAAPFKKFASMRDEWAIKNRYISPGPIQFSGPGSDASNHTLMLE 246 P + A V+L ++ + ++ + + Y +PGP+QF GPG+DA +L++E Sbjct: 505 PALHPATVDLRGKSYELLSQNATKFLLDDVYRNPGPLQFDGPGADAKAGSLVVE 558
>Y2348_MYCLE (Q49929) Hypothetical glycosyl transferase ML2348 (EC 2.-.-.-)| Length = 421 Score = 36.2 bits (82), Expect = 0.079 Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Frame = +3 Query: 150 WEVXSPLSKLQGTRRKFQRDALYIRSLYLGAELQHQGVV-RGVASRAAELDGTGADVSVL 326 W++ P+ LQ R+ + A ++SL GA+L GVV +GV + AE G V Sbjct: 73 WKILPPIKALQQLRQAWADMATDLKSLADGADLVMTGVVYQGVVANVAEYYGIPFGVL-- 130 Query: 327 DGPFIPHR--GKLLKWRSIKLNHSLL-----DHWLELAMP 425 F+P R GK++ LN ++L HWL P Sbjct: 131 --HFVPARVNGKIIPSLPSPLNRAILATVWRAHWLLAKKP 168
>NU1M_HYLLA (Q96126) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 33.1 bits (74), Expect = 0.67 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +1 Query: 190 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 357 +E K ST+ALYI AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTTALYIIAPTLALTIALLLWTPLPMPNPLINLNLGLL--FILATSSLTVYS 115 Query: 358 FL-NGAASSSTIAFL 399 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_PANTR (Q9T9W3) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.9 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +1 Query: 190 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 357 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 358 FL-NGAASSSTIAFL 399 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_HUMAN (P03886) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.9 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +1 Query: 190 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 357 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPATSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 358 FL-NGAASSSTIAFL 399 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_GORGO (Q9T9Z0) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.6 bits (70), Expect = 1.9 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 5/75 (6%) Frame = +1 Query: 190 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 357 +E K ST LYI+AP+ + + W +P PL + GL+ F++A SS + Sbjct: 58 KEPLKPSTSTITLYITAPTLALTIALLLWTPLPMPNPLVNLNLGLL--FILATSSLAVYS 115 Query: 358 FL-NGAASSSTIAFL 399 L +G AS+S A + Sbjct: 116 ILWSGWASNSNYALI 130
>NU1M_LEMCA (O78696) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH| dehydrogenase subunit 1) Length = 318 Score = 31.2 bits (69), Expect = 2.5 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Frame = +1 Query: 190 EENFKEMHSTSALYISAPSSNIKV----WFEASLPGPLNWMGPGLMYRFLMAHSSRIEAN 357 +E + + S+S+LY AP+ + + W LP PL M GL+ F++A SS + Sbjct: 58 KEPLRPLTSSSSLYTIAPTLALTIALVTWIPLPLPYPLINMNMGLL--FILATSSLAVYS 115 Query: 358 FL-NGAASSSTIAFL 399 L +G AS+S A + Sbjct: 116 ILWSGWASNSKYALI 130
>POLG_MVEV5 (P05769) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3434 Score = 29.6 bits (65), Expect = 7.4 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = +1 Query: 274 SLPGPLNWMGPGLMYRFLMAHSSRIEANFLNGAASSSTIAFLITGLNLPCHALNIHQRSQ 453 +L G ++W+ PGL+ L+ +N S +AFL TG L A N+H + Sbjct: 744 TLFGGMSWISPGLLGALLLWMG-------VNARDKSIALAFLATGGVLLFLATNVHADTG 796 Query: 454 CS 459 C+ Sbjct: 797 CA 798
>CDH_PHACH (Q01738) Cellobiose dehydrogenase precursor (EC 1.1.99.18) (CDH)| (Cellobiose-quinone oxidoreductase) Length = 773 Score = 29.6 bits (65), Expect = 7.4 Identities = 17/49 (34%), Positives = 23/49 (46%) Frame = +3 Query: 327 DGPFIPHRGKLLKWRSIKLNHSLLDHWLELAMPCSQHPSTQSVQFLQQS 473 DG F G W S NH+ L +P + HPST ++L+QS Sbjct: 336 DGDFSSSVG----WPSSWTNHAPYTSKLSSRLPSTDHPSTDGQRYLEQS 380
>POLG_TBEVH (Q01299) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3414 Score = 29.3 bits (64), Expect = 9.7 Identities = 9/21 (42%), Positives = 17/21 (80%) Frame = +3 Query: 315 VSVLDGPFIPHRGKLLKWRSI 377 V +LD PF+ ++GK+++WR + Sbjct: 3328 VWILDNPFMQNKGKVMEWRDV 3348
>OTC_GLOVI (Q7NGR7) Ornithine carbamoyltransferase (EC 2.1.3.3) (OTCase)| Length = 313 Score = 29.3 bits (64), Expect = 9.7 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 12/89 (13%) Frame = +3 Query: 123 HNAETVAPLWEVXSPLSKLQGTRRKFQRDALYI-RSLYLGAELQHQGVV----------R 269 H + VA L + +L G + + D + SL LG + Sbjct: 135 HPCQVVADLLTIRENFGRLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDP 194 Query: 270 GVASRAAELDG-TGADVSVLDGPFIPHRG 353 V++RA+E+ G TGA+V +L PF RG Sbjct: 195 AVSARASEIAGRTGAEVQILRDPFEAARG 223 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,923,255 Number of Sequences: 219361 Number of extensions: 1759903 Number of successful extensions: 6110 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5822 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6107 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
