ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2g07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosom... 42 0.99
2gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complet... 40 3.9
3emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chr... 40 3.9
4emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chr... 40 3.9
5gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-27... 40 3.9
6emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-7... 40 3.9
7dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 3.9
8dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 3.9
9emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2... 40 3.9

>gb|AC140251.2| Mus musculus BAC clone RP24-289C19 from chromosome 12, complete
             sequence
          Length = 177652

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    atgtcattcacaggaaaaatg 107
             |||||||||||||||||||||
Sbjct: 81851 atgtcattcacaggaaaaatg 81871



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>gb|AC073090.8| Homo sapiens BAC clone RP11-328J2 from 7, complete sequence
          Length = 116557

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   aggaaaaatgcagagaatct 117
            ||||||||||||||||||||
Sbjct: 6591 aggaaaaatgcagagaatct 6572



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>emb|AL445604.9| Human DNA sequence from clone RP11-661D17 on chromosome 13 Contains a CpG
              island, complete sequence
          Length = 174615

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 98     aggaaaaatgcagagaatct 117
              ||||||||||||||||||||
Sbjct: 119702 aggaaaaatgcagagaatct 119683



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>emb|AL136318.13| Human DNA sequence from clone RP1-254P11 on chromosome 10 Contains a
            transcription elongation factor B (SIII) polypeptide 1
            (15kDa, elongin C) (TCEB1) pseudogene, complete sequence
          Length = 55284

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   aggaaaaatgcagagaatct 117
            ||||||||||||||||||||
Sbjct: 8758 aggaaaaatgcagagaatct 8739



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>gb|AF279873.4| Homo sapiens chromosome 8 clone RP1-25D10, RP1-273G13, RP1-103E7 map
             8p21-p11, complete sequence
          Length = 301232

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    aggaaaaatgcagagaatct 117
             ||||||||||||||||||||
Sbjct: 33093 aggaaaaatgcagagaatct 33074



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>emb|AL357172.3|CNS05TDW Human chromosome 14 DNA sequence BAC R-789A21 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 198714

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 101    aaaaatgcagagaatcttcctcac 124
              ||||||||||||||||| ||||||
Sbjct: 180480 aaaaatgcagagaatctgcctcac 180503



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>dbj|AP001693.1| Homo sapiens genomic DNA, chromosome 21q, section 37/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 98   aggaaaaatgcagagaatct 117
            ||||||||||||||||||||
Sbjct: 8681 aggaaaaatgcagagaatct 8662



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>dbj|AP001341.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B266G18,
             LL56-APP region, complete sequence
          Length = 122318

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    aggaaaaatgcagagaatct 117
             ||||||||||||||||||||
Sbjct: 67424 aggaaaaatgcagagaatct 67405



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>emb|AL359682.4|CNS05TF0 Human chromosome 14 DNA sequence BAC C-2561F5 of library CalTech-D from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 116067

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    aggaaaaatgcagagaatct 117
             ||||||||||||||||||||
Sbjct: 24269 aggaaaaatgcagagaatct 24288


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,185,162
Number of Sequences: 3902068
Number of extensions: 2185162
Number of successful extensions: 44314
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44297
Number of HSP's gapped (non-prelim): 17
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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